Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005294.1

Orthogroup ID

OG0016372

Physical Location & Seq

Genomic Coordinates Reverse (-)

208761 .. 210753

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atgtcaaaagaaaagaaaagcccttacctgcagtatgaccctttcgattacaacccccacgaaatcgacaggtcaagctttccattcttcaattatggctctaattcttccatatacaatattccccaaacaccagcagacccccaaactcaaaacctacatggttttgaatccgatccttcatatttgatgagcttcgccgactgcttaaatgggtcagtggactacaccaccctctcaaaagcctttgacatttcatgttcatcatctgaagtcatttctccgccgctgttagatcaggacgataattcaaataccaaggctgtagctgctggtgtaggagatcaaaacccatccacaccaaattcatcgttatcttgttcatctaatgaagctggtgcggctaatcatgagcatggaaatgatcaagattcagataagatcagcaagaaagataagcatccaaaggtagtacagtctgaagaagctcctggagatcatgaagacaagtcaaagaaagtgaacaaggcaaaaaagaaagagaaacggcaaagggaaccgcggtttgccttcttgaccaagagcgaaattgatcaccttgaagatggatacagatggagaaaaagttattatagatgcactactcagaagtgccttgtaaagaaacgtgtggagagatcgttccaagatccaacgattgtgatcacaacatatgaagggcagcacaaccatcaatgtccagccacacttcgaggcagtatcaatgctgttggcatgttgtcaccttcctttttggcatcagctgcatcgggaggattcgggactagtaacaacgaatccccgagatttccacacgaattattgttaactcaactgcttactccagtcaataacaaccaacttcaactgcaagctcatcatcatcatgatccagcaagttccatgttatactcaaatctcatgaatactcttcaccagaatcaacagcagcagcagcagctacatgttcctcatgactataatatgttgcaaaatttagcttcctcatttagtcacaaggagaagccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010453 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042659 GO:0043565 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

356

Amino Acids

39.96

Weight (kDa)

6.4

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	207 - 245	5.7e-11	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016372)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38370
malus_domestica	MD09G1150700.v1.1 MD17G1138100.v1.1
prunus_persica	Prupe.3G174300_v2.0.a1
pyrus_communis	pycom09g07040
rosa_chinensis	RchiOBHm_Chr2g0151681
rosa_laevigata	RLG00000020568
rosa_multiflora	Rmu_sc0005294.1_g000047
rosa_roxburghii	Rroxscaffold_2G00096260
rosa_rugosa	Rorug02G0428000
rosa_samantha	Rh2AG488700 Rh2BG501500 Rh2CG475300 Rh2DG512600
rosa_wichuraiana	Rw2G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccII	CGCG	1 cut(s)	562
AciI	CCGC	5 cut(s)	284, 287, 401, 560, 562
AclWI	GGATC	3 cut(s)	170, 683, 923
AcsI	RAATTY	2 cut(s)	364, 1033
AcuI	CTGAAG	2 cut(s)	291, 501
AfaI	GTAC	1 cut(s)	474
AflIII	ACRYGT	2 cut(s)	667, 1003
AgsI	TTSAA	5 cut(s)	91, 170, 312, 602, 905
AhlI	ACTAGT	1 cut(s)	824
AjnI	CCWGG	1 cut(s)	490
AloI	GAACNNNNNNTCC	2 cut(s)	665, 697
AluBI	AGCT	9 cut(s)	78, 195, 329, 395, 488, 803, 914, 1000, 1040
AluI	AGCT	9 cut(s)	78, 195, 329, 395, 488, 803, 914, 1000, 1040
AlwI	GGATC	3 cut(s)	170, 683, 923
Ama87I	CYCGRG	1 cut(s)	841
ApeKI	GCWGC	7 cut(s)	329, 721, 803, 988, 991, 994, 997
ApoI	RAATTY	2 cut(s)	364, 1033
AsuHPI	GGTGA	3 cut(s)	587, 774, 965
AvaI	CYCGRG	1 cut(s)	841
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	7 cut(s)	316, 733, 790, 1000, 1003, 1006, 1009
BccI	CCATC	4 cut(s)	361, 599, 609, 738
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	602
BclI	TGATCA	3 cut(s)	424, 592, 702
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	2 cut(s)	29, 324
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	9 cut(s)	287, 330, 402, 722, 804, 989, 992, 995, 998
BlsI	GCNGC	9 cut(s)	288, 331, 403, 723, 805, 990, 993, 996, 999
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	841
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	4 cut(s)	469, 626, 806, 815
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	513, 867
BsaBI	GATNNNNATC	2 cut(s)	459, 701
BsaJI	CCNNGG	2 cut(s)	318, 560
BsaXI	ACNNNNNCTCC	4 cut(s)	610, 640, 665, 695
Bse1I	ACTGG	1 cut(s)	884
Bse8I	GATNNNNATC	2 cut(s)	459, 701
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	318, 560
BseGI	GGATG	2 cut(s)	353, 460
BseJI	GATNNNNATC	2 cut(s)	459, 701
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	884
BseXI	GCAGC	7 cut(s)	316, 733, 790, 1000, 1003, 1006, 1009
Bsh1236I	CGCG	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	841
BslFI	GGGAC	1 cut(s)	835
BsmFI	GGGAC	1 cut(s)	835
BsoBI	CYCGRG	1 cut(s)	841
BspACI	CCGC	5 cut(s)	284, 287, 401, 560, 562
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	562
BspHI	TCATGA	5 cut(s)	409, 499, 925, 960, 1012
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	170, 683, 923
BsrI	ACTGG	1 cut(s)	884
BssECI	CCNNGG	2 cut(s)	318, 560
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	975
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	353, 460
BstFNI	CGCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 401, 803, 994, 997
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	778, 1007
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	2 cut(s)	29, 324
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	7 cut(s)	316, 733, 790, 1000, 1003, 1006, 1009
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	353, 460
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	912
CciI	TCATGA	5 cut(s)	409, 499, 925, 960, 1012
Cfr42I	CCGCGG	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	473
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	291, 501
Eco88I	CYCGRG	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaqI	GGGAC	1 cut(s)	835
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	3 cut(s)	424, 592, 702
Fnu4HI	GCNGC	9 cut(s)	287, 330, 402, 722, 804, 989, 992, 995, 998
FokI	GGATG	2 cut(s)	340, 447
Fsp4HI	GCNGC	9 cut(s)	287, 330, 402, 722, 804, 989, 992, 995, 998
FspBI	CTAG	1 cut(s)	825
GluI	GCNGC	9 cut(s)	287, 330, 402, 722, 804, 989, 992, 995, 998
GsuI	CTGGAG	2 cut(s)	513, 867
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	5 cut(s)	170, 431, 816, 836, 979
HpaI	GTTAAC	1 cut(s)	867
HphI	GGTGA	3 cut(s)	587, 774, 965
Hpy166II	GTNNAC	3 cut(s)	223, 523, 867
Hpy188I	TCNGA	5 cut(s)	175, 271, 436, 481, 648
Hpy8I	GTNNAC	3 cut(s)	223, 523, 867
HpyAV	CCTTC	4 cut(s)	189, 580, 710, 795
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	31, 639, 806, 910, 1030
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 401, 803, 994, 997
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	667
Ksp22I	TGATCA	3 cut(s)	424, 592, 702
KspAI	GTTAAC	1 cut(s)	867
KspI	CCGCGG	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	7 cut(s)	316, 733, 790, 1000, 1003, 1006, 1009
LweI	GCATC	4 cut(s)	469, 626, 806, 815
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	780, 827, 1052
MboII	GAAGA	6 cut(s)	79, 99, 494, 515, 614, 962
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	7 cut(s)	91, 103, 307, 364, 588, 857, 1033
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	5 cut(s)	245, 746, 806, 1020, 1054
MseI	TTAA	2 cut(s)	209, 866
MslI	CAYNNNNRTG	3 cut(s)	414, 420, 924
MspA1I	CMGCKG	3 cut(s)	289, 562, 803
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	5 cut(s)	329, 401, 803, 994, 997
NdeI	CATATG	1 cut(s)	712
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	780, 1052
NspI	RCATGY	2 cut(s)	778, 1007
PagI	TCATGA	5 cut(s)	409, 499, 925, 960, 1012
PciI	ACATGT	1 cut(s)	1003
PfeI	GAWTC	5 cut(s)	170, 431, 816, 836, 979
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	9 cut(s)	288, 331, 403, 723, 805, 990, 993, 996, 999
PscI	ACATGT	1 cut(s)	1003
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	3 cut(s)	414, 420, 924
SacII	CCGCGG	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	209, 866
SatI	GCNGC	9 cut(s)	287, 330, 402, 722, 804, 989, 992, 995, 998
ScrFI	CCNGG	1 cut(s)	492
SfaNI	GCATC	4 cut(s)	469, 626, 806, 815
SfcI	CTRYAG	2 cut(s)	29, 324
Sfr303I	CCGCGG	1 cut(s)	563
SgrBI	CCGCGG	1 cut(s)	563
SmiMI	CAYNNNNRTG	3 cut(s)	414, 420, 924
SpeI	ACTAGT	1 cut(s)	824
Sse9I	AATT	7 cut(s)	91, 103, 307, 364, 588, 857, 1033
SsiI	CCGC	5 cut(s)	284, 287, 401, 560, 562
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	45, 66, 751
TasI	AATT	7 cut(s)	91, 103, 307, 364, 588, 857, 1033
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	2 cut(s)	289, 404
TfiI	GAWTC	5 cut(s)	170, 431, 816, 836, 979
Tru1I	TTAA	2 cut(s)	209, 866
Tru9I	TTAA	2 cut(s)	209, 866
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	780, 1052
TseI	GCWGC	7 cut(s)	329, 721, 803, 988, 991, 994, 997
Tsp45I	GTSAC	2 cut(s)	780, 1052
TspDTI	ATGAA	9 cut(s)	171, 246, 252, 357, 372, 405, 516, 729, 977
TspRI	CASTG	1 cut(s)	225
XapI	RAATTY	2 cut(s)	364, 1033
XceI	RCATGY	2 cut(s)	778, 1007
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.