Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005571.1

Orthogroup ID

OG0019060

Physical Location & Seq

Genomic Coordinates Reverse (-)

80561 .. 80863

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgtctttgtccaaactcaagttccgcaagggcctgaggatccatgacaaccctgctctcgagcacgcctccaaggcctccaatttcctctacccggtctttgttatcgatccgcagtgcatgaatcccaacccgaacgcactctcacctgggtcctccaaggccggcctgaaccgaatctggttcctgctccagagtctggtggatttggatttgaacctcaagaagcttgggtccagattgttggtgtttaaaaggcgaccccagcgaggtcatcgttcgttgcctaaaggaggttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003913 GO:0003914 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0016829 GO:0016830 GO:0050896 GO:0140097

KEGG Pathways

Metabolic & Signaling

ko04710 map04710

Pfam Domains

Protein Families

DNA_photolyase FAD_binding_7

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

10.81

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_photolyase	PF00875	8 - 90	4.4e-21	DNA photolyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019060)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015098
rosa_multiflora	Rmu_sc0001368.1_g000008 Rmu_sc0001374.1_g000030 Rmu_sc0005571.1_g000024
rosa_roxburghii	Rroxscaffold_3G00222750 Rroxscaffold_3G00231090
rosa_samantha	Rh1DG151500 Rh4CG237600 Rh5DG504200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AciI	CCGC	2 cut(s)	25, 113
AclWI	GGATC	3 cut(s)	34, 47, 104
AfiI	CCNNNNNNNGG	4 cut(s)	94, 199, 269, 293
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	34, 47, 104
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	4 cut(s)	31, 75, 162, 166
AspS9I	GGNCC	3 cut(s)	31, 153, 234
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	153, 234
AxyI	CCTNAGG	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	95
BglI	GCCNNNNNGGC	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	95, 150
Bme18I	GGWCC	2 cut(s)	153, 234
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	31, 153, 234
BmiI	GGNNCC	4 cut(s)	41, 154, 185, 235
BmrFI	CCNGG	2 cut(s)	95, 150
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	72, 149, 159
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 199, 269, 293
Bse118I	RCCGGY	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	72, 149, 159
BseLI	CCNNNNNNNGG	4 cut(s)	94, 199, 269, 293
BseMII	CTCAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	264
BshFI	GGCC	4 cut(s)	33, 77, 164, 168
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	95, 165
BslI	CCNNNNNNNGG	4 cut(s)	94, 199, 269, 293
BsnI	GGCC	4 cut(s)	33, 77, 164, 168
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	39, 109
BspACI	CCGC	2 cut(s)	25, 113
BspANI	GGCC	4 cut(s)	33, 77, 164, 168
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	4 cut(s)	41, 154, 185, 235
BspPI	GGATC	3 cut(s)	34, 47, 104
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	72, 149, 159
BssMI	GATC	2 cut(s)	39, 109
BssT1I	CCWWGG	2 cut(s)	72, 159
Bst2UI	CCWGG	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	66, 166
BstDEI	CTNAG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	42, 112
BstMBI	GATC	2 cut(s)	39, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 265
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	93, 148
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	33, 77, 164, 168
BsuTUI	ATCGAT	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	66, 166
CaiI	CAGNNNCTG	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	31, 153, 234
ClaI	ATCGAT	1 cut(s)	108
CviAII	CATG	2 cut(s)	44, 121
CviJI	RGCY	5 cut(s)	33, 77, 164, 168, 229
CviKI_1	RGCY	5 cut(s)	33, 77, 164, 168, 229
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	41, 111
DpnII	GATC	2 cut(s)	39, 109
DraI	TTTAAA	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	72, 159
Eco147I	AGGCCT	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	153, 234
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	31, 153
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	72, 159
ErhI	CCWWGG	2 cut(s)	72, 159
FaeI	CATG	2 cut(s)	47, 124
FaiI	YATR	2 cut(s)	45, 122
FatI	CATG	2 cut(s)	43, 120
FseI	GGCCGGCC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	4 cut(s)	33, 77, 164, 168
HapII	CCGG	2 cut(s)	95, 165
Hin1II	CATG	2 cut(s)	47, 124
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	124, 177, 196
HpaII	CCGG	2 cut(s)	95, 165
HphI	GGTGA	1 cut(s)	138
Hpy188III	TCNNGA	4 cut(s)	59, 193, 223, 237
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 265
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	47, 124
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	39, 109
LmnI	GCTCC	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	41, 111
MboI	GATC	2 cut(s)	39, 109
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	30, 79, 88, 98, 166, 230, 263, 287
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	1 cut(s)	252
MspI	CCGG	2 cut(s)	95, 165
MspR9I	CCNGG	2 cut(s)	95, 150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	74, 265
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	39, 109
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	47, 124
NlaIV	GGNNCC	4 cut(s)	41, 154, 185, 235
PaeR7I	CTCGAG	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	124, 177
PflMI	CCANNNNNTGG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	4 cut(s)	41, 154, 185, 235
PspPI	GGNCC	3 cut(s)	31, 153, 234
PspPPI	RGGWCCY	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	39
RigI	GGCCGGCC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	39, 109
Sau96I	GGNCC	3 cut(s)	31, 153, 234
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	95, 150
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	151, 222, 231, 274, 298
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	153, 234
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	3 cut(s)	17, 59, 221
SmoI	CTYRAG	3 cut(s)	17, 59, 221
Sse9I	AATT	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	25, 113
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	93, 148
StyI	CCWWGG	2 cut(s)	72, 159
TaqI	TCGA	2 cut(s)	60, 108
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	124, 177
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	153, 234
XagI	CCTNNNNNAGG	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.