Rmu_sc0005631.1_g000025
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005631.1
OG0013052
Physical Location & Seq
Forward (+)
111630 .. 113063
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1434 bp
atgaggtctggaatgttaggcctagaaatgcctctgcaccaaacacaaaaccccccaaatcctcagaacccacaccaccatatgcaccaaccccaaatggtcagctatgcccaccatgaagctgatcacaatcatcacccacaagctcaccaatccgcaaaacatgggtacccatacgccacaaagcccaagcagatcaccctcagtgatgaagatgaacctgggtttggtgctgatgacagcgctggtgaaaacaagaggaaaatctcaccatggcagagaatgaagtggactgacaccatggtcaggcttctaatcatggctgtgttttacattggggatgagggtggctctgagggccctgatcccacagggaagaagaagagtggtggaggattgctgcagaagaaagggaaatggaaatcggtgtcgcgggctatgatggagaagggtttctatgtctctcctcagcaatgtgaggacaagttcaatgatttgaacaagaggtacaagagggtgaatgacatacttggcaagggaactgcttgcaaggtcgtggagaatcaagggttattggagaagatggaattgtcgtccaagatgaaggacgaagttaaaaaactgctgaattccaagcacttgttctttagggaaatgtgcgcttatcacaacagttgcggccatggcactgttggtgctgctggagctagcggtgtgcataactcatccccggaagacccttcggaggttcaattgcagcagcagcagcagcagacgccccagcagcaaaggtgctttcatgtatcggaaaatgctcatgtcgttgccaattcgggcaggtcagagacggagggatccaaaatgtttaaagcagagagtggtggcgaggatgaagatgaagacgatgaggatgatgattcggaggacgacgatgatgaggaggaagaaggggttgttgaaggcgtttcgaggggtcaaattgggcatggacatgaggatgaggatgagaatgatcatgaaagagctaaaaggccaagaaagggaagctgtttttctgggtcctcacataaaatgttgatgcagcaattgagcagtgaagtaagtggtgtgatccaagatgtgtccaagagtccatgggagaagaagcagtggatgaaagcaaggctgatacaattggaggagcaacaagtgaactaccaataccaatctttcgagctcgaaaagcagaggctcaagtgggttaagtatagtagcaaaaaggaaagggatatggaaagagctaagcttgcgaatgagagaagaaggcttgagaacgagagaatgctattgcttgttaggcagaaggagctcgaattgcttgatctgcatcaccaccagcagcaacaacatcagcaacaaaattcttcaaacaagagaagcgacctcaccggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

477

Amino Acids

54.5

Weight (kDa)

6.12

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 94 - 187 1.2e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 828
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AccII CGCG 1 cut(s) 433
AciI CCGC 4 cut(s) 156, 433, 678, 711
AclWI GGATC 4 cut(s) 359, 849, 862, 1105
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 2 cut(s) 628, 1399
AcyI GRCGYC 1 cut(s) 776
AfaI GTAC 2 cut(s) 170, 509
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1040
AgsI TTSAA 5 cut(s) 490, 499, 752, 959, 1407
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 4 cut(s) 210, 242, 626, 658
Alw21I GWGCWC 2 cut(s) 1218, 1350
Alw26I GTCTC 2 cut(s) 466, 839
AlwI GGATC 4 cut(s) 359, 849, 862, 1105
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 4 cut(s) 19, 358, 679, 1031
ApaI GGGCCC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 628, 1399
Asp700I GAANNNNTTC 1 cut(s) 452
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 245, 662
AspS9I GGNCC 3 cut(s) 358, 359, 1059
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 8 cut(s) 128, 140, 190, 260, 261, 529, 1361, 1417
AsuNHI GCTAGC 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1059
BaeGI GKGCMC 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BamHI GGATCC 1 cut(s) 854
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 3 cut(s) 362, 1218, 1350
BbsI GAAGAC 2 cut(s) 741, 906
Bbv12I GWGCWC 2 cut(s) 1218, 1350
BbvCI CCTCAGC 1 cut(s) 468
BccI CCATC 2 cut(s) 436, 577
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 2 cut(s) 124, 1012
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 2 cut(s) 466, 839
BfaI CTAG 2 cut(s) 23, 708
BfmI CTRYAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 828
BlpI GCTNAGC 1 cut(s) 1281
Bme1390I CCNGG 2 cut(s) 222, 731
Bme18I GGWCC 1 cut(s) 1059
BmgT120I GGNCC 3 cut(s) 358, 359, 1059
BmiI GGNNCC 4 cut(s) 170, 360, 856, 1060
BmrFI CCNGG 2 cut(s) 222, 731
BmsI GCATC 2 cut(s) 1068, 1375
BmtI GCTAGC 1 cut(s) 711
BpiI GAAGAC 2 cut(s) 741, 906
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 1281
BpuEI CTTGAG 2 cut(s) 1217, 1328
BpuMI CCSGG 1 cut(s) 731
BsaBI GATNNNNATC 2 cut(s) 129, 1365
BsaHI GRCGYC 1 cut(s) 776
BsaJI CCNNGG 6 cut(s) 221, 272, 300, 682, 729, 1133
BsaWI WCCGGW 1 cut(s) 1427
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1040
Bse3DI GCAATG 1 cut(s) 479
Bse8I GATNNNNATC 2 cut(s) 129, 1365
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 6 cut(s) 221, 272, 300, 682, 729, 1133
BseGI GGATG 7 cut(s) 346, 725, 895, 916, 1003, 1009, 1158
BseJI GATNNNNATC 2 cut(s) 129, 1365
BseLI CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1040
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 4 cut(s) 77, 217, 345, 482
BseRI GAGGAG 3 cut(s) 456, 953, 1193
BseSI GKGCMC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 780
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 4 cut(s) 21, 360, 681, 1033
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 1218, 1350
BsiSI CCGG 2 cut(s) 731, 1428
BslI CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1040
BsmAI GTCTC 2 cut(s) 466, 839
BsmBI CGTCTC 1 cut(s) 839
BsmI GAATGC 1 cut(s) 1326
BsnI GGCC 4 cut(s) 21, 360, 681, 1033
Bsp120I GGGCCC 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 362, 1218, 1350
Bsp143I GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
Bsp1720I GCTNAGC 1 cut(s) 1281
Bsp19I CCATGG 4 cut(s) 272, 300, 682, 1133
BspACI CCGC 4 cut(s) 156, 433, 678, 711
BspANI GGCC 4 cut(s) 21, 360, 681, 1033
BspCNI CTCAG 4 cut(s) 76, 216, 346, 481
BspFNI CGCG 1 cut(s) 433
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 4 cut(s) 170, 360, 856, 1060
BspMAI CTGCAG 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 828
BspOI GCTAGC 1 cut(s) 711
BspPI GGATC 4 cut(s) 359, 849, 862, 1105
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 479
BssECI CCNNGG 6 cut(s) 221, 272, 300, 682, 729, 1133
BssMI GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
BssNI GRCGYC 1 cut(s) 776
BssT1I CCWWGG 4 cut(s) 272, 300, 682, 1133
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 674, 691
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 776
BstC8I GCNNGC 4 cut(s) 435, 547, 709, 1287
BstDEI CTNAG 5 cut(s) 63, 203, 354, 468, 1281
BstDSI CCRYGG 4 cut(s) 272, 300, 682, 1133
BstF5I GGATG 7 cut(s) 346, 725, 895, 916, 1003, 1009, 1158
BstFNI CGCG 1 cut(s) 433
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 662
BstKTI GATC 7 cut(s) 127, 198, 367, 857, 1015, 1113, 1363
BstMAI GTCTC 2 cut(s) 466, 839
BstMBI GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 2 cut(s) 220, 729
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 433
BstV2I GAAGAC 2 cut(s) 741, 906
BstX2I RGATCY 1 cut(s) 854
BstYI RGATCY 1 cut(s) 854
BsuRI GGCC 4 cut(s) 21, 360, 681, 1033
BtgI CCRYGG 4 cut(s) 272, 300, 682, 1133
BtsCI GGATG 7 cut(s) 346, 725, 895, 916, 1003, 1009, 1158
BtsI GCAGTG 2 cut(s) 1099, 1154
BtsIMutI CAGTG 4 cut(s) 211, 687, 1099, 1154
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 4 cut(s) 435, 547, 709, 1287
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 2 cut(s) 245, 662
Cfr13I GGNCC 3 cut(s) 358, 359, 1059
CseI GACGC 1 cut(s) 784
Csp6I GTAC 2 cut(s) 169, 508
CviQI GTAC 2 cut(s) 169, 508
DdeI CTNAG 5 cut(s) 63, 203, 354, 468, 1281
DpnI GATC 7 cut(s) 126, 197, 366, 856, 1014, 1112, 1362
DpnII GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
DraI TTTAAA 1 cut(s) 868
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Ecl136II GAGCTC 2 cut(s) 1216, 1348
Eco130I CCWWGG 4 cut(s) 272, 300, 682, 1133
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 3 cut(s) 362, 1218, 1350
Eco47I GGWCC 1 cut(s) 1059
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 2 cut(s) 1216, 1348
EcoICRI GAGCTC 2 cut(s) 1216, 1348
EcoO109I RGGNCCY 3 cut(s) 358, 359, 1059
EcoRI GAATTC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 4 cut(s) 272, 300, 682, 1133
EcoT38I GRGCYC 3 cut(s) 362, 1218, 1350
ErhI CCWWGG 4 cut(s) 272, 300, 682, 1133
Esp3I CGTCTC 1 cut(s) 839
FauI CCCGC 1 cut(s) 426
FauNDI CATATG 1 cut(s) 81
FbaI TGATCA 2 cut(s) 124, 1012
FokI GGATG 7 cut(s) 353, 712, 902, 923, 1010, 1016, 1165
FriOI GRGCYC 3 cut(s) 362, 1218, 1350
FspBI CTAG 2 cut(s) 23, 708
GlaI GCGC 2 cut(s) 244, 661
GsaI CCCAGC 1 cut(s) 784
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 4 cut(s) 21, 360, 681, 1033
HapII CCGG 2 cut(s) 731, 1428
HgaI GACGC 1 cut(s) 784
HhaI GCGC 2 cut(s) 245, 662
Hin1I GRCGYC 1 cut(s) 776
Hin6I GCGC 2 cut(s) 243, 660
HinP1I GCGC 2 cut(s) 243, 660
HindIII AAGCTT 1 cut(s) 1283
HinfI GANTC 3 cut(s) 562, 917, 1129
HpaII CCGG 2 cut(s) 731, 1428
HphI GGTGA 8 cut(s) 128, 140, 190, 260, 261, 529, 1361, 1417
Hpy166II GTNNAC 2 cut(s) 291, 1192
Hpy188I TCNGA 6 cut(s) 66, 355, 745, 808, 844, 922
Hpy188III TCNNGA 2 cut(s) 9, 1016
Hpy8I GTNNAC 2 cut(s) 291, 1192
Hpy99I CGWCG 1 cut(s) 932
HpyAV CCTTC 7 cut(s) 442, 598, 750, 941, 953, 1296, 1336
HpyCH4III ACNGT 2 cut(s) 674, 691
HpyCH4V TGCA 8 cut(s) 37, 85, 403, 549, 718, 757, 1081, 1366
HpyF3I CTNAG 5 cut(s) 63, 203, 354, 468, 1281
Hsp92I GRCGYC 1 cut(s) 776
HspAI GCGC 2 cut(s) 243, 660
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 2 cut(s) 124, 1012
Kzo9I GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
LmnI GCTCC 3 cut(s) 704, 1180, 1345
LweI GCATC 2 cut(s) 1068, 1375
MaeI CTAG 2 cut(s) 23, 708
MalI GATC 7 cut(s) 126, 197, 366, 856, 1014, 1112, 1362
MboI GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
MfeI CAATTG 3 cut(s) 752, 1085, 1172
MflI RGATCY 1 cut(s) 854
MhlI GDGCHC 3 cut(s) 362, 1218, 1350
MluCI AATT 9 cut(s) 587, 628, 752, 829, 978, 1085, 1172, 1352, 1399
MlyI GAGTC 1 cut(s) 1138
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 3 cut(s) 615, 867, 1242
MslI CAYNNNNRTG 3 cut(s) 323, 990, 996
MspI CCGG 2 cut(s) 731, 1428
MspR9I CCNGG 2 cut(s) 222, 731
MunI CAATTG 3 cut(s) 752, 1085, 1172
Mva1269I GAATGC 1 cut(s) 1326
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 433
NciI CCSGG 1 cut(s) 731
NcoI CCATGG 4 cut(s) 272, 300, 682, 1133
NdeI CATATG 1 cut(s) 81
NdeII GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
NheI GCTAGC 1 cut(s) 707
NlaIV GGNNCC 4 cut(s) 170, 360, 856, 1060
PagI TCATGA 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 21
PctI GAATGC 1 cut(s) 1326
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 562, 917
PleI GAGTC 1 cut(s) 1137
PpsI GAGTC 1 cut(s) 1137
PpuMI RGGWCCY 1 cut(s) 1059
Psp124BI GAGCTC 2 cut(s) 1218, 1350
Psp5II RGGWCCY 1 cut(s) 1059
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 780
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 170, 360, 856, 1060
PspOMI GGGCCC 1 cut(s) 358
PspPI GGNCC 3 cut(s) 358, 359, 1059
PspPPI RGGWCCY 1 cut(s) 1059
PsrI GAACNNNNNNTAC 4 cut(s) 491, 523, 1184, 1216
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 854
RsaI GTAC 2 cut(s) 170, 509
RsaNI GTAC 2 cut(s) 169, 508
RseI CAYNNNNRTG 3 cut(s) 323, 990, 996
SacI GAGCTC 2 cut(s) 1218, 1350
SaqAI TTAA 3 cut(s) 615, 867, 1242
Sau3AI GATC 7 cut(s) 124, 195, 364, 854, 1012, 1110, 1360
Sau96I GGNCC 3 cut(s) 358, 359, 1059
SchI GAGTC 1 cut(s) 1138
ScrFI CCNGG 2 cut(s) 222, 731
SduI GDGCHC 3 cut(s) 362, 1218, 1350
SfaNI GCATC 2 cut(s) 1068, 1375
SfcI CTRYAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 1059
SmiMI CAYNNNNRTG 3 cut(s) 323, 990, 996
SmlI CTYRAG 2 cut(s) 1232, 1307
SmoI CTYRAG 2 cut(s) 1232, 1307
Sse9I AATT 9 cut(s) 587, 628, 752, 829, 978, 1085, 1172, 1352, 1399
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 4 cut(s) 156, 433, 678, 711
SspMI CTAG 2 cut(s) 23, 708
SstI GAGCTC 2 cut(s) 1218, 1350
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 220, 729
StyI CCWWGG 4 cut(s) 272, 300, 682, 1133
TaaI ACNGT 2 cut(s) 674, 691
TaqI TCGA 4 cut(s) 968, 1212, 1218, 1350
TasI AATT 9 cut(s) 587, 628, 752, 829, 978, 1085, 1172, 1352, 1399
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 2 cut(s) 562, 917
Tru1I TTAA 3 cut(s) 615, 867, 1242
Tru9I TTAA 3 cut(s) 615, 867, 1242
TscAI CASTG 4 cut(s) 211, 694, 1099, 1154
TspGWI ACGGA 1 cut(s) 863
TspRI CASTG 4 cut(s) 211, 694, 1099, 1154
VpaK11BI GGWCC 1 cut(s) 1059
XapI RAATTY 2 cut(s) 628, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 2 cut(s) 23, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.