Rmu_sc0005716.1_g000009

Protein prenyltransferase alpha subunit repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005716.1
Physical Location & Seq
Forward (+)
40911 .. 44908
3998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005716.1_g000009.1.cds

Sequence Viewer

Length: 2121 bp
atgcacggacttcctcggcgagctccgaagccagaagaagaagaagctctagccgccaaagccaaagacctccgcgctcttcagactcagctcctctccaaccaccacagcaaggtttacaccaaggaagctctcgatgtaagcgccaagctcctcgagaaaaaccccgagtgctacaccgcctggaattaccgaaagctcgccgtccagcacaacctcctcgccgttcagtccgactccgactccgactccgattccggcgcgatcaaggctattctcgacctggaactgaaagtggtggtggatgcgttgaagcagaattataagtcgtatggagcttggcatcatcggaaatgggtgctgagcaaggggcattgttctttagactatgaactgaagcttctcaaaaagtttcagaccgcggattcccggaatttccatgcttggaattaccggagatttgtagctgcattgttgaacagatcagagaaggaagaattggattataccaccgaaatgatcgaaaacaatttcagcaattactcggcctggcacaatcgtagtgtactcctgtcgagtttgctgaagaaagaagctccagggttctttccaaaagagaaagttctgaatgatgagtatgggattgtacaacaagctatttttacagatccagatgatcaaagcggttggtttcactatcgttggcttcttgatcagacggggaaaatggatgctcctttacttgcttcttcttggcctgcccatggatccaatgtcattctatcaagaaataggcacttatatgattgttcggcatcaccttttgatagtttccattccgattcaggaacatttccactggttctatattttaatcaagctgtcaaaggtgtaaattcatctaccgtagctattgaatcttcattttgcacagaagatcttgattggaaaccacttttacaaattagctcccagttttcccaagtttgggttacacaaatccaatttccagaagcaaactcccagtatgaagaagcctgtgcagtggaagttagtgtcggactgtctcagggtattgtttcttcaagtggttttgactatagccatcttacacggttggccttcaaagtgtgtctgtcccctgttgacactgaaccgtctaaaacgcagggcagggatcaaattttgtggagagatgaaaatttctccttgtaccaaacacgatctgaggagccacccaaatcactctctattgataatctaataattcacaatgttgataagccaacgacttcaaattggcgtgcagagactattgctaatgaaattgctattttccgagagttgttgtcagagacaagctgtaaaattggaaaacttacgttggcaagattactaacagcttatgatgttattcagtctcaatgtgcaaacaaaatggtcaattctgaagaagttctggagctttatgctgacctactaaagttggacccgacacattgtcagtattacaaagatgagcacagcttagttttcttgcagcagttaacttctagtaaggagtctctgctgaaacactgctttagccataaaaccctggcttcttcaagcattggcaattacacatgtctatgtctaaataagttatccctaacgcggatgggatccattgaaaaattattgtgggttcaaatgctggacctcagccacaatgaacttcattcaattgaaggattggaggccatgcagcttctatcttgcttaaatctgagtaacaacaagcttggtagttttactgctcttgcacctttgagaatgttgaagtctctacaagtgctggatatatcatacaatgagataggttcacacactatcgacaagacaaggtatctattctcgtctcctctttgtcacacagaagaaattagttggaacaaggacgaaaatgtgaatggatgtatcaatctgacaaattattgggatgctttcctgatatttaaaagcatgagcttgacacaattttccatattggggaatacaattgctggtgaaaacttcaagtcgtttttggtcaaggcagttcctactctcgagtggctggatggcgataaattgcactga

Protein Analysis

706

Amino Acids

80.17

Weight (kDa)

5.91

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccII CGCG 4 cut(s) 75, 263, 422, 1657
AciI CCGC 7 cut(s) 54, 73, 180, 420, 422, 684, 1657
AclWI GGATC 6 cut(s) 662, 762, 775, 1185, 1659, 1672
AcsI RAATTY 4 cut(s) 433, 895, 1182, 1201
AcuI CTGAAG 4 cut(s) 65, 416, 605, 1470
AfaI GTAC 3 cut(s) 567, 648, 1214
AfiI CCNNNNNNNGG 6 cut(s) 112, 764, 987, 988, 1656, 2031
AflIII ACRYGT 1 cut(s) 1625
AhdI GACNNNNNGTC 1 cut(s) 1500
AjnI CCWGG 5 cut(s) 182, 282, 548, 598, 1596
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
Alw21I GWGCWC 2 cut(s) 25, 1524
Alw26I GTCTC 7 cut(s) 1071, 1304, 1349, 1425, 1569, 1830, 1905
AlwI GGATC 6 cut(s) 662, 762, 775, 1185, 1659, 1672
Ama87I CYCGRG 3 cut(s) 155, 167, 2090
AoxI GGCC 4 cut(s) 546, 755, 1119, 1740
ApeKI GCWGC 3 cut(s) 467, 1540, 1747
ApoI RAATTY 4 cut(s) 433, 895, 1182, 1201
Asp700I GAANNNNTTC 1 cut(s) 1455
AspLEI GCGC 3 cut(s) 77, 146, 263
AspS9I GGNCC 2 cut(s) 1489, 1699
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 810, 2060
AvaI CYCGRG 3 cut(s) 155, 167, 2090
AvaII GGWCC 2 cut(s) 1489, 1699
BamHI GGATCC 2 cut(s) 767, 1664
BanII GRGCYC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 1066, 1098
Bbv12I GWGCWC 2 cut(s) 25, 1524
BbvCI CCTCAGC 1 cut(s) 1703
BbvI GCAGC 3 cut(s) 454, 1552, 1759
BccI CCATC 3 cut(s) 1113, 1654, 2096
BceAI ACGGC 2 cut(s) 188, 209
BciT130I CCWGG 5 cut(s) 184, 284, 550, 600, 1598
BclI TGATCA 2 cut(s) 676, 712
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 7 cut(s) 1071, 1304, 1349, 1425, 1569, 1830, 1905
BfaI CTAG 2 cut(s) 50, 1554
BfmI CTRYAG 1 cut(s) 1099
BfoI RGCGCY 1 cut(s) 147
BglII AGATCT 1 cut(s) 937
BisI GCNGC 4 cut(s) 54, 468, 1541, 1748
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 4 cut(s) 55, 469, 1542, 1749
Bme1390I CCNGG 6 cut(s) 184, 284, 430, 550, 600, 1598
Bme18I GGWCC 2 cut(s) 1489, 1699
BmeRI GACNNNNNGTC 1 cut(s) 1500
BmeT110I CYCGRG 3 cut(s) 155, 167, 2090
BmgT120I GGNCC 2 cut(s) 1489, 1699
BmiI GGNNCC 4 cut(s) 769, 1233, 1491, 1666
BmrFI CCNGG 6 cut(s) 184, 284, 430, 550, 600, 1598
BmrI ACTGGG 2 cut(s) 967, 1018
BmsI GCATC 5 cut(s) 295, 352, 721, 824, 1972
BmuI ACTGGG 2 cut(s) 967, 1018
BpmI CTGGAG 2 cut(s) 582, 1481
Bpu10I CCTNAGC 1 cut(s) 1703
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 430
BsaJI CCNNGG 6 cut(s) 14, 123, 420, 599, 763, 1596
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 4 cut(s) 227, 233, 257, 263
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 764, 987, 988, 1656, 2031
Bse1I ACTGG 3 cut(s) 864, 973, 1024
BseBI CCWGG 5 cut(s) 184, 284, 550, 600, 1598
BseDI CCNNGG 6 cut(s) 14, 123, 420, 599, 763, 1596
BseGI GGATG 6 cut(s) 310, 736, 1665, 1961, 1987, 2107
BseLI CCNNNNNNNGG 6 cut(s) 112, 764, 987, 988, 1656, 2031
BseMII CTCAG 6 cut(s) 101, 353, 1082, 1218, 1717, 1760
BseNI ACTGG 3 cut(s) 864, 973, 1024
BseRI GAGGAG 5 cut(s) 83, 143, 209, 1244, 1893
BseXI GCAGC 3 cut(s) 454, 1552, 1759
BsgI GTGCAG 2 cut(s) 1062, 1326
Bsh1236I CGCG 4 cut(s) 75, 263, 422, 1657
BshFI GGCC 4 cut(s) 548, 757, 1121, 1742
BsiHKAI GWGCWC 2 cut(s) 25, 1524
BsiHKCI CYCGRG 3 cut(s) 155, 167, 2090
BsiSI CCGG 3 cut(s) 258, 430, 454
BslFI GGGAC 1 cut(s) 1123
BslI CCNNNNNNNGG 6 cut(s) 112, 764, 987, 988, 1656, 2031
BsmAI GTCTC 7 cut(s) 1071, 1304, 1349, 1425, 1569, 1830, 1905
BsmBI CGTCTC 1 cut(s) 1905
BsmFI GGGAC 1 cut(s) 1123
BsnI GGCC 4 cut(s) 548, 757, 1121, 1742
BsoBI CYCGRG 3 cut(s) 155, 167, 2090
Bsp1286I GDGCHC 2 cut(s) 25, 1524
Bsp1407I TGTACA 1 cut(s) 646
Bsp1720I GCTNAGC 1 cut(s) 362
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 7 cut(s) 54, 73, 180, 420, 422, 684, 1657
BspANI GGCC 4 cut(s) 548, 757, 1121, 1742
BspCNI CTCAG 6 cut(s) 100, 354, 1081, 1219, 1716, 1761
BspFNI CGCG 4 cut(s) 75, 263, 422, 1657
BspLI GGNNCC 4 cut(s) 769, 1233, 1491, 1666
BspPI GGATC 6 cut(s) 662, 762, 775, 1185, 1659, 1672
BspQI GCTCTTC 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 3 cut(s) 864, 973, 1024
BssECI CCNNGG 6 cut(s) 14, 123, 420, 599, 763, 1596
BssT1I CCWWGG 2 cut(s) 123, 763
Bst2UI CCWGG 5 cut(s) 184, 284, 550, 600, 1598
Bst4CI ACNGT 4 cut(s) 907, 1065, 1116, 1158
Bst6I CTCTTC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 4 cut(s) 21, 201, 759, 1305
BstDEI CTNAG 7 cut(s) 87, 362, 1068, 1227, 1528, 1703, 1769
BstDSI CCRYGG 2 cut(s) 420, 763
BstF5I GGATG 6 cut(s) 310, 736, 1665, 1961, 1987, 2107
BstFNI CGCG 4 cut(s) 75, 263, 422, 1657
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 3 cut(s) 77, 146, 263
BstMAI GTCTC 7 cut(s) 1071, 1304, 1349, 1425, 1569, 1830, 1905
BstMWI GCNNNNNNNGC 3 cut(s) 53, 59, 269
BstNI CCWGG 5 cut(s) 184, 284, 550, 600, 1598
BstNSI RCATGY 1 cut(s) 1629
BstSCI CCNGG 6 cut(s) 182, 282, 428, 548, 598, 1596
BstSFI CTRYAG 1 cut(s) 1099
BstUI CGCG 4 cut(s) 75, 263, 422, 1657
BstV1I GCAGC 3 cut(s) 454, 1552, 1759
BstX2I RGATCY 4 cut(s) 667, 767, 937, 1664
BstYI RGATCY 4 cut(s) 667, 767, 937, 1664
BsuRI GGCC 4 cut(s) 548, 757, 1121, 1742
BtgI CCRYGG 2 cut(s) 420, 763
BtsCI GGATG 6 cut(s) 310, 736, 1665, 1961, 1987, 2107
BtsI GCAGTG 2 cut(s) 1050, 1576
BtsIMutI CAGTG 5 cut(s) 857, 1050, 1149, 1576, 2116
Cac8I GCNNGC 4 cut(s) 21, 201, 759, 1305
CfoI GCGC 3 cut(s) 77, 146, 263
Cfr13I GGNCC 2 cut(s) 1489, 1699
Cfr42I CCGCGG 1 cut(s) 423
Csp6I GTAC 3 cut(s) 566, 647, 1213
CspCI CAANNNNNGTGG 2 cut(s) 1169, 1204
CviAII CATG 5 cut(s) 440, 764, 1626, 1744, 2005
CviQI GTAC 3 cut(s) 566, 647, 1213
DdeI CTNAG 7 cut(s) 87, 362, 1068, 1227, 1528, 1703, 1769
DraI TTTAAA 1 cut(s) 1999
DriI GACNNNNNGTC 1 cut(s) 1500
Eam1104I CTCTTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 1 cut(s) 1500
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 123, 763
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 1489, 1699
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 4 cut(s) 65, 416, 605, 1470
Eco88I CYCGRG 3 cut(s) 155, 167, 2090
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 5 cut(s) 182, 282, 548, 598, 1596
EcoT14I CCWWGG 2 cut(s) 123, 763
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 123, 763
Esp3I CGTCTC 1 cut(s) 1905
FaeI CATG 5 cut(s) 443, 767, 1629, 1747, 2008
FaqI GGGAC 1 cut(s) 1123
FatI CATG 5 cut(s) 439, 763, 1625, 1743, 2004
FbaI TGATCA 2 cut(s) 676, 712
Fnu4HI GCNGC 4 cut(s) 54, 468, 1541, 1748
FokI GGATG 6 cut(s) 317, 743, 1672, 1968, 1994, 2114
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 4 cut(s) 54, 468, 1541, 1748
FspBI CTAG 2 cut(s) 50, 1554
GlaI GCGC 3 cut(s) 76, 145, 262
GluI GCNGC 4 cut(s) 54, 468, 1541, 1748
GsuI CTGGAG 2 cut(s) 582, 1481
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 4 cut(s) 548, 757, 1121, 1742
HapII CCGG 3 cut(s) 258, 430, 454
HhaI GCGC 3 cut(s) 77, 146, 263
Hin1II CATG 5 cut(s) 443, 767, 1629, 1747, 2008
Hin6I GCGC 3 cut(s) 75, 144, 261
HinP1I GCGC 3 cut(s) 75, 144, 261
HincII GTYRAC 2 cut(s) 1147, 1548
HindII GTYRAC 2 cut(s) 1147, 1548
HindIII AAGCTT 2 cut(s) 398, 1781
HinfI GANTC 9 cut(s) 85, 236, 242, 248, 254, 425, 842, 917, 1562
HpaI GTTAAC 1 cut(s) 1548
HpaII CCGG 3 cut(s) 258, 430, 454
HphI GGTGA 2 cut(s) 810, 2060
Hpy166II GTNNAC 5 cut(s) 118, 566, 1147, 1548, 1865
Hpy8I GTNNAC 5 cut(s) 118, 566, 1147, 1548, 1865
HpyAV CCTTC 3 cut(s) 484, 1132, 1724
HpyCH4III ACNGT 4 cut(s) 907, 1065, 1116, 1158
HpyCH4IV ACGT 1 cut(s) 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 59, 269
HpyF3I CTNAG 7 cut(s) 87, 362, 1068, 1227, 1528, 1703, 1769
HpySE526I ACGT 1 cut(s) 1382
Hsp92II CATG 5 cut(s) 443, 767, 1629, 1747, 2008
HspAI GCGC 3 cut(s) 75, 144, 261
Ksp22I TGATCA 2 cut(s) 676, 712
KspAI GTTAAC 1 cut(s) 1548
KspI CCGCGG 1 cut(s) 423
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 9 cut(s) 28, 96, 156, 335, 601, 739, 974, 1231, 1462
Lsp1109I GCAGC 3 cut(s) 454, 1552, 1759
LweI GCATC 5 cut(s) 295, 352, 721, 824, 1972
MaeI CTAG 2 cut(s) 50, 1554
MaeII ACGT 1 cut(s) 1382
MaeIII GTNAC 3 cut(s) 991, 1772, 1910
MfeI CAATTG 2 cut(s) 1725, 2040
MflI RGATCY 4 cut(s) 667, 767, 937, 1664
MhlI GDGCHC 2 cut(s) 25, 1524
MlyI GAGTC 5 cut(s) 79, 230, 236, 242, 1571
MmeI TCCRAC 7 cut(s) 123, 258, 264, 270, 1039, 1467, 1910
MroXI GAANNNNTTC 1 cut(s) 1455
MseI TTAA 4 cut(s) 873, 1547, 1763, 1998
MslI CAYNNNNRTG 3 cut(s) 515, 801, 1630
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 3 cut(s) 258, 430, 454
MspR9I CCNGG 6 cut(s) 184, 284, 430, 550, 600, 1598
MunI CAATTG 2 cut(s) 1725, 2040
MvaI CCWGG 5 cut(s) 184, 284, 550, 600, 1598
MvnI CGCG 4 cut(s) 75, 263, 422, 1657
MwoI GCNNNNNNNGC 3 cut(s) 53, 59, 269
NciI CCSGG 1 cut(s) 430
NcoI CCATGG 1 cut(s) 763
NlaIII CATG 5 cut(s) 443, 767, 1629, 1747, 2008
NlaIV GGNNCC 4 cut(s) 769, 1233, 1491, 1666
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 1 cut(s) 1910
NspI RCATGY 1 cut(s) 1629
PaeR7I CTCGAG 2 cut(s) 155, 2090
PciI ACATGT 1 cut(s) 1625
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 1455
PfeI GAWTC 4 cut(s) 254, 425, 842, 917
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 4 cut(s) 55, 469, 1542, 1749
PleI GAGTC 5 cut(s) 79, 230, 236, 242, 1570
PpsI GAGTC 5 cut(s) 79, 230, 236, 242, 1570
PscI ACATGT 1 cut(s) 1625
PsiI TTATAA 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 5 cut(s) 182, 282, 548, 598, 1596
PspGI CCWGG 5 cut(s) 182, 282, 548, 598, 1596
PspN4I GGNNCC 4 cut(s) 769, 1233, 1491, 1666
PspPI GGNCC 2 cut(s) 1489, 1699
PsuI RGATCY 4 cut(s) 667, 767, 937, 1664
RsaI GTAC 3 cut(s) 567, 648, 1214
RsaNI GTAC 3 cut(s) 566, 647, 1213
RseI CAYNNNNRTG 3 cut(s) 515, 801, 1630
SacI GAGCTC 1 cut(s) 25
SacII CCGCGG 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 873, 1547, 1763, 1998
SatI GCNGC 4 cut(s) 54, 468, 1541, 1748
Sau96I GGNCC 2 cut(s) 1489, 1699
SchI GAGTC 5 cut(s) 79, 230, 236, 242, 1571
ScrFI CCNGG 6 cut(s) 184, 284, 430, 550, 600, 1598
SduI GDGCHC 2 cut(s) 25, 1524
SfaNI GCATC 5 cut(s) 295, 352, 721, 824, 1972
SfcI CTRYAG 1 cut(s) 1099
Sfr274I CTCGAG 2 cut(s) 155, 2090
Sfr303I CCGCGG 1 cut(s) 423
SgrBI CCGCGG 1 cut(s) 423
SinI GGWCC 2 cut(s) 1489, 1699
SlaI CTCGAG 2 cut(s) 155, 2090
SmiMI CAYNNNNRTG 3 cut(s) 515, 801, 1630
SmlI CTYRAG 2 cut(s) 155, 2090
SmoI CTYRAG 2 cut(s) 155, 2090
SsiI CCGC 7 cut(s) 54, 73, 180, 420, 422, 684, 1657
SspMI CTAG 2 cut(s) 50, 1554
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 6 cut(s) 182, 282, 428, 548, 598, 1596
StyI CCWWGG 2 cut(s) 123, 763
TaaI ACNGT 4 cut(s) 907, 1065, 1116, 1158
TaiI ACGT 1 cut(s) 1385
TaqI TCGA 7 cut(s) 135, 156, 279, 522, 575, 1875, 2091
TatI WGTACW 2 cut(s) 565, 646
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 254, 425, 842, 917
Tru1I TTAA 4 cut(s) 873, 1547, 1763, 1998
Tru9I TTAA 4 cut(s) 873, 1547, 1763, 1998
TscAI CASTG 4 cut(s) 864, 1050, 1156, 1583
TseFI GTSAC 1 cut(s) 1910
TseI GCWGC 3 cut(s) 467, 1540, 1747
Tsp45I GTSAC 1 cut(s) 1910
TspDTI ATGAA 8 cut(s) 405, 888, 912, 1044, 1212, 1338, 1709, 1728
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 4 cut(s) 864, 1050, 1156, 1583
VpaK11BI GGWCC 2 cut(s) 1489, 1699
XapI RAATTY 4 cut(s) 433, 895, 1182, 1201
XceI RCATGY 1 cut(s) 1629
XhoI CTCGAG 2 cut(s) 155, 2090
XmnI GAANNNNTTC 1 cut(s) 1455
XspI CTAG 2 cut(s) 50, 1554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.