Rmu_sc0006268.1_g000006

Protein prenyltransferase alpha subunit repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006268.1
Physical Location & Seq
Forward (+)
24077 .. 28067
3991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006268.1_g000006.1.cds

Sequence Viewer

Length: 2115 bp
atgcacggacttcctcggcgagctccgaagccagaagaagaagaagctctagccgccaaagccaaagacctccgcgctcttcagactcagctcctctccaaccaccacagcaaggtttacaccaaggaagctctcgatgtaagcgccaagctcctcgagaaaaaccccgagtgctacaccgcctggaattaccgaaagctcgccgtccagcacaacctcctcgccgtccagtccgactccgacgccgattccgccgcgatcaagtctgttctcgacctggaactgaaagtggtggtggatgcgttgaagcagaattataagtcgtatggagcttggcatcatcggaaatgggtgctgagcaaggggcattgttctttagactatgaactgaagcttctcaaaaagtttcagaccgcggattcccggaatttccatgcttggaattaccggagatttgtagctgcattgttgaacagatcagagaaggaagaattggattataccaccgaaatgatcgaaaacaatttcagcaattactcggcctggcacaatcgtagtgtactcctgtcgagtttgctgaagaaagaagctccagggttctttccaaaagagaaagttctgaatgatgagtatgggattgtacaacaagctatttttacagatccagatgatcaaagcggttggtttcactatcgttggcttcttgatcagacggggaaaatggatgctcctttacttgcttcttcttggcctgcccatggatccaatgtcattctatcaagaaataggcacttatatgattgttcggcatcaccttttgatagtttccattccgattcaggaacatttccactggttctatattttaatcaagctgtcaaaggtgtaaattcatctaccgtagctattgaatcttcgttttgcacagaagatcttgattggaaaccacttttacaaattagctcccagttttcccaagtttgggttactcatatccgatttccagaagcaaactcccagtatgaagaagcctgtgcggtggaagttagtgtcggactgtctcagggcattgtttcttcaagtggttttgactatagccatcttacacggttggccttcaaagtgtgtctgtcccctgttgacactgaaccttctaaaacgcagggcagggataaaattttgtggagagatgaaaatttctccttgtaccaaacacgatctgaggagccacacaaatcattctctattgatgatctaataattcacaatgttgataagccaacgacttcaaattggcgtgcagagactattgctaatgaaattgctattttccgagagttgttgtcagagacaagctgtaaaattggaaaacttacgttggcaagattactaacagcttatgatgttattcagtctcaatgtgcaaacaaaatggtcaattctgaagaagttctggagctttatgctgacctactaaagttggacccgacacattgtcagtattacaaagatgagcacagcttagttttcttgcagcagttaacttctagtaaggagtctctgctgaaacactgctttagccataaaaccctggcttcttcaagcattggcaattacacatgtctatgtctaaataagttatccctaacgcggatgggatccattgaaaaattattgtgggttcaaatgctggacctcagccacaatgaacttcattcaattgaaggattggaggccatgcagcttctatcttgcttaaatctgagtaacaacaagcttggtagttttactgctcttgcacctttgagaatgttgaagtctctacaagtgctggatatatcatacaatgagataggttcacacactatcgacaagacaaggtatctattctcgtctcctctttgtcacacagaagaaattagttggaacaaggacgaaaatgtgaatggatgtatcaatctgacaaattattgggatgctttcctgatatttaaaagcatgagcttgacacaattttccatattggggaatacaattgctggtgaaaacttcaagtcgtttttggtcaaggtagttcctactctcgagtggctggatggcgataaattgcactga

Protein Analysis

704

Amino Acids

80.11

Weight (kDa)

6.07

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AccII CGCG 4 cut(s) 75, 257, 416, 1651
AclWI GGATC 5 cut(s) 656, 756, 769, 1653, 1666
AcsI RAATTY 4 cut(s) 427, 889, 1176, 1195
AcuI CTGAAG 4 cut(s) 65, 410, 599, 1464
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 3 cut(s) 561, 642, 1208
AfiI CCNNNNNNNGG 6 cut(s) 112, 758, 981, 982, 1650, 2025
AflIII ACRYGT 1 cut(s) 1619
AhdI GACNNNNNGTC 1 cut(s) 1494
AjnI CCWGG 5 cut(s) 182, 276, 542, 592, 1590
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
Alw21I GWGCWC 2 cut(s) 25, 1518
Alw26I GTCTC 7 cut(s) 1065, 1298, 1343, 1419, 1563, 1824, 1899
AlwI GGATC 5 cut(s) 656, 756, 769, 1653, 1666
Ama87I CYCGRG 3 cut(s) 155, 167, 2084
AoxI GGCC 4 cut(s) 540, 749, 1113, 1734
ApeKI GCWGC 3 cut(s) 461, 1534, 1741
ApoI RAATTY 4 cut(s) 427, 889, 1176, 1195
Asp700I GAANNNNTTC 1 cut(s) 1449
AspLEI GCGC 2 cut(s) 77, 146
AspS9I GGNCC 2 cut(s) 1483, 1693
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 804, 2054
AvaI CYCGRG 3 cut(s) 155, 167, 2084
AvaII GGWCC 2 cut(s) 1483, 1693
BamHI GGATCC 2 cut(s) 761, 1658
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 25, 1518
BbvCI CCTCAGC 1 cut(s) 1697
BbvI GCAGC 3 cut(s) 448, 1546, 1753
BccI CCATC 3 cut(s) 1107, 1648, 2090
BceAI ACGGC 2 cut(s) 188, 209
BciT130I CCWGG 5 cut(s) 184, 278, 544, 594, 1592
BclI TGATCA 2 cut(s) 670, 706
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 7 cut(s) 1065, 1298, 1343, 1419, 1563, 1824, 1899
BfaI CTAG 2 cut(s) 50, 1548
BfmI CTRYAG 1 cut(s) 1093
BfoI RGCGCY 1 cut(s) 147
BglII AGATCT 1 cut(s) 931
BisI GCNGC 5 cut(s) 54, 255, 462, 1535, 1742
BlpI GCTNAGC 1 cut(s) 356
BlsI GCNGC 5 cut(s) 55, 256, 463, 1536, 1743
Bme1390I CCNGG 6 cut(s) 184, 278, 424, 544, 594, 1592
Bme18I GGWCC 2 cut(s) 1483, 1693
BmeRI GACNNNNNGTC 1 cut(s) 1494
BmeT110I CYCGRG 3 cut(s) 155, 167, 2084
BmgT120I GGNCC 2 cut(s) 1483, 1693
BmiI GGNNCC 4 cut(s) 763, 1227, 1485, 1660
BmrFI CCNGG 6 cut(s) 184, 278, 424, 544, 594, 1592
BmrI ACTGGG 2 cut(s) 961, 1012
BmsI GCATC 5 cut(s) 289, 346, 715, 818, 1966
BmuI ACTGGG 2 cut(s) 961, 1012
BpmI CTGGAG 2 cut(s) 576, 1475
Bpu10I CCTNAGC 1 cut(s) 1697
Bpu1102I GCTNAGC 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 424
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 6 cut(s) 14, 123, 414, 593, 757, 1590
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 758, 981, 982, 1650, 2025
Bse1I ACTGG 4 cut(s) 229, 858, 967, 1018
BseBI CCWGG 5 cut(s) 184, 278, 544, 594, 1592
BseDI CCNNGG 6 cut(s) 14, 123, 414, 593, 757, 1590
BseGI GGATG 6 cut(s) 304, 730, 1659, 1955, 1981, 2101
BseLI CCNNNNNNNGG 6 cut(s) 112, 758, 981, 982, 1650, 2025
BseMII CTCAG 6 cut(s) 101, 347, 1076, 1212, 1711, 1754
BseNI ACTGG 4 cut(s) 229, 858, 967, 1018
BseRI GAGGAG 5 cut(s) 83, 143, 209, 1238, 1887
BseXI GCAGC 3 cut(s) 448, 1546, 1753
BsgI GTGCAG 1 cut(s) 1320
Bsh1236I CGCG 4 cut(s) 75, 257, 416, 1651
BshFI GGCC 4 cut(s) 542, 751, 1115, 1736
BsiHKAI GWGCWC 2 cut(s) 25, 1518
BsiHKCI CYCGRG 3 cut(s) 155, 167, 2084
BsiSI CCGG 2 cut(s) 424, 448
BslFI GGGAC 1 cut(s) 1117
BslI CCNNNNNNNGG 6 cut(s) 112, 758, 981, 982, 1650, 2025
BsmAI GTCTC 7 cut(s) 1065, 1298, 1343, 1419, 1563, 1824, 1899
BsmBI CGTCTC 1 cut(s) 1899
BsmFI GGGAC 1 cut(s) 1117
BsnI GGCC 4 cut(s) 542, 751, 1115, 1736
BsoBI CYCGRG 3 cut(s) 155, 167, 2084
Bsp1286I GDGCHC 2 cut(s) 25, 1518
Bsp1407I TGTACA 1 cut(s) 640
Bsp1720I GCTNAGC 1 cut(s) 356
Bsp19I CCATGG 1 cut(s) 757
BspANI GGCC 4 cut(s) 542, 751, 1115, 1736
BspCNI CTCAG 6 cut(s) 100, 348, 1075, 1213, 1710, 1755
BspFNI CGCG 4 cut(s) 75, 257, 416, 1651
BspLI GGNNCC 4 cut(s) 763, 1227, 1485, 1660
BspPI GGATC 5 cut(s) 656, 756, 769, 1653, 1666
BspQI GCTCTTC 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 4 cut(s) 229, 858, 967, 1018
BssECI CCNNGG 6 cut(s) 14, 123, 414, 593, 757, 1590
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 123, 757
Bst2UI CCWGG 5 cut(s) 184, 278, 544, 594, 1592
Bst4CI ACNGT 3 cut(s) 901, 1059, 1110
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 4 cut(s) 21, 201, 753, 1299
BstDEI CTNAG 7 cut(s) 87, 356, 1062, 1221, 1522, 1697, 1763
BstDSI CCRYGG 2 cut(s) 414, 757
BstF5I GGATG 6 cut(s) 304, 730, 1659, 1955, 1981, 2101
BstFNI CGCG 4 cut(s) 75, 257, 416, 1651
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 77, 146
BstMAI GTCTC 7 cut(s) 1065, 1298, 1343, 1419, 1563, 1824, 1899
BstMWI GCNNNNNNNGC 3 cut(s) 53, 59, 251
BstNI CCWGG 5 cut(s) 184, 278, 544, 594, 1592
BstNSI RCATGY 1 cut(s) 1623
BstSCI CCNGG 6 cut(s) 182, 276, 422, 542, 592, 1590
BstSFI CTRYAG 1 cut(s) 1093
BstUI CGCG 4 cut(s) 75, 257, 416, 1651
BstV1I GCAGC 3 cut(s) 448, 1546, 1753
BstX2I RGATCY 4 cut(s) 661, 761, 931, 1658
BstYI RGATCY 4 cut(s) 661, 761, 931, 1658
BsuRI GGCC 4 cut(s) 542, 751, 1115, 1736
BtgI CCRYGG 2 cut(s) 414, 757
BtsCI GGATG 6 cut(s) 304, 730, 1659, 1955, 1981, 2101
BtsI GCAGTG 1 cut(s) 1570
BtsIMutI CAGTG 4 cut(s) 851, 1143, 1570, 2110
Cac8I GCNNGC 4 cut(s) 21, 201, 753, 1299
CfoI GCGC 2 cut(s) 77, 146
Cfr13I GGNCC 2 cut(s) 1483, 1693
Cfr42I CCGCGG 1 cut(s) 417
CseI GACGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 560, 641, 1207
CviAII CATG 5 cut(s) 434, 758, 1620, 1738, 1999
CviQI GTAC 3 cut(s) 560, 641, 1207
DdeI CTNAG 7 cut(s) 87, 356, 1062, 1221, 1522, 1697, 1763
DraI TTTAAA 1 cut(s) 1993
DriI GACNNNNNGTC 1 cut(s) 1494
Eam1104I CTCTTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 1 cut(s) 1494
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 123, 757
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 1483, 1693
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 4 cut(s) 65, 410, 599, 1464
Eco88I CYCGRG 3 cut(s) 155, 167, 2084
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 5 cut(s) 182, 276, 542, 592, 1590
EcoT14I CCWWGG 2 cut(s) 123, 757
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 123, 757
Esp3I CGTCTC 1 cut(s) 1899
FaeI CATG 5 cut(s) 437, 761, 1623, 1741, 2002
FaqI GGGAC 1 cut(s) 1117
FatI CATG 5 cut(s) 433, 757, 1619, 1737, 1998
FbaI TGATCA 2 cut(s) 670, 706
Fnu4HI GCNGC 5 cut(s) 54, 255, 462, 1535, 1742
FokI GGATG 6 cut(s) 311, 737, 1666, 1962, 1988, 2108
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 5 cut(s) 54, 255, 462, 1535, 1742
FspBI CTAG 2 cut(s) 50, 1548
GlaI GCGC 2 cut(s) 76, 145
GluI GCNGC 5 cut(s) 54, 255, 462, 1535, 1742
GsuI CTGGAG 2 cut(s) 576, 1475
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 4 cut(s) 542, 751, 1115, 1736
HapII CCGG 2 cut(s) 424, 448
HgaI GACGC 1 cut(s) 251
HhaI GCGC 2 cut(s) 77, 146
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 5 cut(s) 437, 761, 1623, 1741, 2002
Hin6I GCGC 2 cut(s) 75, 144
HinP1I GCGC 2 cut(s) 75, 144
HincII GTYRAC 2 cut(s) 1141, 1542
HindII GTYRAC 2 cut(s) 1141, 1542
HindIII AAGCTT 2 cut(s) 392, 1775
HinfI GANTC 7 cut(s) 85, 236, 248, 419, 836, 911, 1556
HpaI GTTAAC 1 cut(s) 1542
HpaII CCGG 2 cut(s) 424, 448
HphI GGTGA 2 cut(s) 804, 2054
Hpy166II GTNNAC 5 cut(s) 118, 560, 1141, 1542, 1859
Hpy8I GTNNAC 5 cut(s) 118, 560, 1141, 1542, 1859
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 478, 1126, 1161, 1718
HpyCH4III ACNGT 3 cut(s) 901, 1059, 1110
HpyCH4IV ACGT 1 cut(s) 1376
HpyCH4V TGCA 9 cut(s) 4, 464, 924, 1301, 1424, 1534, 1741, 1799, 2110
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 59, 251
HpyF3I CTNAG 7 cut(s) 87, 356, 1062, 1221, 1522, 1697, 1763
HpySE526I ACGT 1 cut(s) 1376
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 5 cut(s) 437, 761, 1623, 1741, 2002
HspAI GCGC 2 cut(s) 75, 144
Ksp22I TGATCA 2 cut(s) 670, 706
KspAI GTTAAC 1 cut(s) 1542
KspI CCGCGG 1 cut(s) 417
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 9 cut(s) 28, 96, 156, 329, 595, 733, 968, 1225, 1456
Lsp1109I GCAGC 3 cut(s) 448, 1546, 1753
LweI GCATC 5 cut(s) 289, 346, 715, 818, 1966
MaeI CTAG 2 cut(s) 50, 1548
MaeII ACGT 1 cut(s) 1376
MaeIII GTNAC 3 cut(s) 985, 1766, 1904
MfeI CAATTG 2 cut(s) 1719, 2034
MflI RGATCY 4 cut(s) 661, 761, 931, 1658
MhlI GDGCHC 2 cut(s) 25, 1518
MlyI GAGTC 3 cut(s) 79, 230, 1565
MmeI TCCRAC 6 cut(s) 123, 258, 264, 1033, 1461, 1904
MroXI GAANNNNTTC 1 cut(s) 1449
MseI TTAA 4 cut(s) 867, 1541, 1757, 1992
MslI CAYNNNNRTG 3 cut(s) 509, 795, 1624
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 2 cut(s) 424, 448
MspR9I CCNGG 6 cut(s) 184, 278, 424, 544, 594, 1592
MunI CAATTG 2 cut(s) 1719, 2034
MvaI CCWGG 5 cut(s) 184, 278, 544, 594, 1592
MvnI CGCG 4 cut(s) 75, 257, 416, 1651
MwoI GCNNNNNNNGC 3 cut(s) 53, 59, 251
NciI CCSGG 1 cut(s) 424
NcoI CCATGG 1 cut(s) 757
NlaIII CATG 5 cut(s) 437, 761, 1623, 1741, 2002
NlaIV GGNNCC 4 cut(s) 763, 1227, 1485, 1660
NmeAIII GCCGAG 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 1904
NspI RCATGY 1 cut(s) 1623
PaeR7I CTCGAG 2 cut(s) 155, 2084
PciI ACATGT 1 cut(s) 1619
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 1449
PfeI GAWTC 4 cut(s) 248, 419, 836, 911
PfoI TCCNGGA 1 cut(s) 422
PkrI GCNGC 5 cut(s) 55, 256, 463, 1536, 1743
PleI GAGTC 3 cut(s) 79, 230, 1564
PpsI GAGTC 3 cut(s) 79, 230, 1564
PscI ACATGT 1 cut(s) 1619
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 5 cut(s) 182, 276, 542, 592, 1590
PspGI CCWGG 5 cut(s) 182, 276, 542, 592, 1590
PspN4I GGNNCC 4 cut(s) 763, 1227, 1485, 1660
PspPI GGNCC 2 cut(s) 1483, 1693
PsuI RGATCY 4 cut(s) 661, 761, 931, 1658
RsaI GTAC 3 cut(s) 561, 642, 1208
RsaNI GTAC 3 cut(s) 560, 641, 1207
RseI CAYNNNNRTG 3 cut(s) 509, 795, 1624
SacI GAGCTC 1 cut(s) 25
SacII CCGCGG 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 867, 1541, 1757, 1992
SatI GCNGC 5 cut(s) 54, 255, 462, 1535, 1742
Sau96I GGNCC 2 cut(s) 1483, 1693
SchI GAGTC 3 cut(s) 79, 230, 1565
ScrFI CCNGG 6 cut(s) 184, 278, 424, 544, 594, 1592
SduI GDGCHC 2 cut(s) 25, 1518
SfaNI GCATC 5 cut(s) 289, 346, 715, 818, 1966
SfcI CTRYAG 1 cut(s) 1093
Sfr274I CTCGAG 2 cut(s) 155, 2084
Sfr303I CCGCGG 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 417
SinI GGWCC 2 cut(s) 1483, 1693
SlaI CTCGAG 2 cut(s) 155, 2084
SmiMI CAYNNNNRTG 3 cut(s) 509, 795, 1624
SmlI CTYRAG 2 cut(s) 155, 2084
SmoI CTYRAG 2 cut(s) 155, 2084
SspMI CTAG 2 cut(s) 50, 1548
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 6 cut(s) 182, 276, 422, 542, 592, 1590
StyI CCWWGG 2 cut(s) 123, 757
TaaI ACNGT 3 cut(s) 901, 1059, 1110
TaiI ACGT 1 cut(s) 1379
TaqI TCGA 7 cut(s) 135, 156, 273, 516, 569, 1869, 2085
TatI WGTACW 2 cut(s) 559, 640
TauI GCSGC 2 cut(s) 56, 257
TfiI GAWTC 4 cut(s) 248, 419, 836, 911
Tru1I TTAA 4 cut(s) 867, 1541, 1757, 1992
Tru9I TTAA 4 cut(s) 867, 1541, 1757, 1992
TscAI CASTG 3 cut(s) 858, 1150, 1577
TseFI GTSAC 1 cut(s) 1904
TseI GCWGC 3 cut(s) 461, 1534, 1741
Tsp45I GTSAC 1 cut(s) 1904
TspDTI ATGAA 7 cut(s) 399, 882, 1038, 1206, 1332, 1703, 1722
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 3 cut(s) 858, 1150, 1577
VpaK11BI GGWCC 2 cut(s) 1483, 1693
XapI RAATTY 4 cut(s) 427, 889, 1176, 1195
XceI RCATGY 1 cut(s) 1623
XhoI CTCGAG 2 cut(s) 155, 2084
XmnI GAANNNNTTC 1 cut(s) 1449
XspI CTAG 2 cut(s) 50, 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.