Rmu_sc0005888.1_g000018

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0010961
Physical Location & Seq
Reverse (-)
81894 .. 84373
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
atggtctccatgtactgcaatcgcttatacgccaataagcccgagcttgctgcaagtaggatcgacgctattggctaccaggtcggccatcagctctccgagaggtatacaatggagcggcctcggtttactgatcatctcgatgcaattaagttcatatgcaaggatttctggtctgagcttttcaagaagcagatagacaacttgaagaccaatcataggggtacctttgtgttgcaagataatcggtttcggtggctttcacgcatgtctcttgatccgtctgctgaaaatggagacgtgtctcaagaaaattctgaggcctcagctgaaaacaaggcggcacaagtaccaaacatgcatctccatttctcttgtggagtcataaaaggggctcttcataacttggggattgcttgtgctgtttctgcagatacttcccacctccctgcatgttcatttgtggttcgtataaaaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

160

Amino Acids

18.09

Weight (kDa)

8.3

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 1 - 159 7.6e-39 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 107
AciI CCGC 2 cut(s) 118, 341
AclWI GGATC 2 cut(s) 68, 272
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 3 cut(s) 14, 226, 351
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 2 cut(s) 187, 208
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 4 cut(s) 46, 94, 181, 329
AluI AGCT 4 cut(s) 46, 94, 181, 329
Alw26I GTCTC 4 cut(s) 10, 276, 291, 309
AlwI GGATC 2 cut(s) 68, 272
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 3 cut(s) 85, 119, 321
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 313
Asp718I GGTACC 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 96
BcgI CGANNNNNNTGC 4 cut(s) 32, 66, 227, 261
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 4 cut(s) 10, 276, 291, 309
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 3 cut(s) 51, 119, 342
BlsI GCNGC 3 cut(s) 52, 120, 343
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 133, 370
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 325
BpuEI CTTGAG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 3 cut(s) 168, 309, 339
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 3 cut(s) 87, 121, 323
BshNI GGYRCC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 4 cut(s) 10, 276, 291, 309
BsmBI CGTCTC 1 cut(s) 291
BsnI GGCC 3 cut(s) 87, 121, 323
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 60, 133, 277
BspACI CCGC 2 cut(s) 118, 341
BspANI GGCC 3 cut(s) 87, 121, 323
BspCNI CTCAG 3 cut(s) 169, 310, 338
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 2 cut(s) 68, 272
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 3 cut(s) 60, 133, 277
BssNAI GTATAC 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 177, 318, 325
BstKTI GATC 3 cut(s) 63, 136, 280
BstMAI GTCTC 4 cut(s) 10, 276, 291, 309
BstMBI GATC 3 cut(s) 60, 133, 277
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 3 cut(s) 271, 361, 456
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 108
BsuRI GGCC 3 cut(s) 87, 121, 323
BtrI CACGTC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 48
CseI GACGC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 3 cut(s) 13, 225, 350
CviAII CATG 4 cut(s) 10, 268, 358, 453
CviQI GTAC 3 cut(s) 13, 225, 350
DdeI CTNAG 3 cut(s) 177, 318, 325
DpnI GATC 3 cut(s) 62, 135, 279
DpnII GATC 3 cut(s) 60, 133, 277
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco147I AGGCCT 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 4 cut(s) 13, 271, 361, 456
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 4 cut(s) 9, 267, 357, 452
FauNDI CATATG 1 cut(s) 158
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 51, 119, 342
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 51, 119, 342
GluI GCNGC 3 cut(s) 51, 119, 342
HaeIII GGCC 3 cut(s) 87, 121, 323
HgaI GACGC 1 cut(s) 74
Hin1II CATG 4 cut(s) 13, 271, 361, 456
HinfI GANTC 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 108, 129
Hpy188I TCNGA 3 cut(s) 100, 178, 319
Hpy188III TCNNGA 4 cut(s) 140, 187, 275, 308
Hpy8I GTNNAC 2 cut(s) 108, 129
Hpy99I CGWCG 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 8 cut(s) 18, 53, 146, 162, 238, 361, 431, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 3 cut(s) 177, 318, 325
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 13, 271, 361, 456
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 60, 133, 277
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 65, 92, 157, 462
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 133, 370
MabI ACCWGGT 1 cut(s) 78
MaeII ACGT 1 cut(s) 300
MalI GATC 3 cut(s) 62, 135, 279
MbiI CCGCTC 1 cut(s) 118
MboI GATC 3 cut(s) 60, 133, 277
MboII GAAGA 2 cut(s) 220, 389
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 2 cut(s) 147, 313
MlyI GAGTC 1 cut(s) 390
MnlI CCTC 5 cut(s) 96, 132, 313, 334, 455
Mph1103I ATGCAT 1 cut(s) 363
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeI CATATG 1 cut(s) 158
NdeII GATC 3 cut(s) 60, 133, 277
NlaIII CATG 4 cut(s) 13, 271, 361, 456
NlaIV GGNNCC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 363
NspI RCATGY 3 cut(s) 271, 361, 456
PceI AGGCCT 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 402
PkrI GCNGC 3 cut(s) 52, 120, 343
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 14, 226, 351
RsaNI GTAC 3 cut(s) 13, 225, 350
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 51, 119, 342
Sau3AI GATC 3 cut(s) 60, 133, 277
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 397
SetI ASST 9 cut(s) 48, 84, 96, 107, 183, 230, 303, 331, 447
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 2 cut(s) 133, 370
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 2 cut(s) 147, 313
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 2 cut(s) 118, 341
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 78
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 63, 141
TasI AATT 2 cut(s) 147, 313
TatI WGTACW 1 cut(s) 12
TauI GCSGC 2 cut(s) 121, 344
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 145, 389, 447
TspGWI ACGGA 1 cut(s) 270
XapI RAATTY 1 cut(s) 313
XceI RCATGY 3 cut(s) 271, 361, 456
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.