Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005970.1

Orthogroup ID

OG0018153

Physical Location & Seq

Genomic Coordinates Reverse (-)

46721 .. 47068

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005970.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggtatatcccactaaagtatttactgttttcttttacctctttggttttacacagatcattgctggtggtccagaatgtgttagtgagacatggatgagtaatgtatatagtttcgggatgatgatttgggagatggtgactggtgaggcagcctactccgcatgttcaccggtccaagcagcagttgggatagctgcctgtggcctcagacctgagattccaaaggactgtccacaaatgctgagatccttgatgaccaagtgctggaacaactccccctcaaagcgtcctcagttctctgaaattctttcactattgctgcggaccaacaacaatgttaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

8.33

Isoelectric Point (pI)

66.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018153)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322891
rosa_multiflora	Rmu_sc0005970.1_g000010
rosa_roxburghii	Rroxscaffold_3G00246540
rosa_rugosa	Rorug07G0060200 Rorug07G0060200
rosa_samantha	Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AciI	CCGC	2 cut(s)	162, 325
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgeI	ACCGGT	1 cut(s)	172
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	152, 182, 197, 322
ApoI	RAATTY	1 cut(s)	306
AsiGI	ACCGGT	1 cut(s)	172
AspS9I	GGNCC	3 cut(s)	71, 175, 327
AsuHPI	GGTGA	3 cut(s)	151, 158, 162
AvaII	GGWCC	3 cut(s)	71, 175, 327
BbvI	GCAGC	4 cut(s)	164, 184, 194, 309
BccI	CCATC	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	153, 183, 198, 323
BlsI	GCNGC	4 cut(s)	154, 184, 199, 324
Bme18I	GGWCC	3 cut(s)	71, 175, 327
BmgT120I	GGNCC	3 cut(s)	71, 175, 327
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	102, 126
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	4 cut(s)	207, 223, 236, 308
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	164, 184, 194, 309
BshFI	GGCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	57, 248
BspACI	CCGC	2 cut(s)	162, 325
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	4 cut(s)	208, 222, 237, 307
BspPI	GGATC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	172
BssMI	GATC	2 cut(s)	57, 248
Bst4CI	ACNGT	2 cut(s)	28, 233
BstDEI	CTNAG	4 cut(s)	209, 216, 245, 294
BstF5I	GGATG	2 cut(s)	102, 126
BstKTI	GATC	2 cut(s)	60, 251
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	57, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	168
BstV1I	GCAGC	4 cut(s)	164, 184, 194, 309
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	102, 126
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	71, 175, 327
CseI	GACGC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	172
CviAII	CATG	2 cut(s)	93, 165
CviJI	RGCY	3 cut(s)	155, 197, 207
CviKI_1	RGCY	3 cut(s)	155, 197, 207
DdeI	CTNAG	4 cut(s)	209, 216, 245, 294
DpnI	GATC	2 cut(s)	59, 250
DpnII	GATC	2 cut(s)	57, 248
Eco47I	GGWCC	3 cut(s)	71, 175, 327
FaeI	CATG	2 cut(s)	96, 168
FaiI	YATR	5 cut(s)	7, 94, 109, 111, 166
FatI	CATG	2 cut(s)	92, 164
Fnu4HI	GCNGC	4 cut(s)	153, 183, 198, 323
FokI	GGATG	2 cut(s)	109, 133
Fsp4HI	GCNGC	4 cut(s)	153, 183, 198, 323
GluI	GCNGC	4 cut(s)	153, 183, 198, 323
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	96, 168
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	151, 158, 162
Hpy166II	GTNNAC	2 cut(s)	170, 236
Hpy188I	TCNGA	2 cut(s)	212, 304
Hpy188III	TCNNGA	2 cut(s)	74, 118
Hpy8I	GTNNAC	2 cut(s)	170, 236
HpyCH4III	ACNGT	2 cut(s)	28, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	4 cut(s)	209, 216, 245, 294
Hsp92II	CATG	2 cut(s)	96, 168
Kzo9I	GATC	2 cut(s)	57, 248
LpnPI	CCDG	7 cut(s)	51, 87, 129, 186, 214, 228, 253
Lsp1109I	GCAGC	4 cut(s)	164, 184, 194, 309
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	59, 250
MboI	GATC	2 cut(s)	57, 248
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	1 cut(s)	306
MnlI	CCTC	5 cut(s)	50, 142, 218, 292, 303
MspI	CCGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	57, 248
NlaIII	CATG	2 cut(s)	96, 168
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	267
PinAI	ACCGGT	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	154, 184, 199, 324
PspPI	GGNCC	3 cut(s)	71, 175, 327
PsuI	RGATCY	1 cut(s)	248
SatI	GCNGC	4 cut(s)	153, 183, 198, 323
Sau3AI	GATC	2 cut(s)	57, 248
Sau96I	GGNCC	3 cut(s)	71, 175, 327
SetI	ASST	4 cut(s)	42, 199, 217, 347
SinI	GGWCC	3 cut(s)	71, 175, 327
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	2 cut(s)	162, 325
TaaI	ACNGT	2 cut(s)	28, 233
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	152, 182, 197, 322
Tsp45I	GTSAC	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	71, 175, 327
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.