Rh1BG105300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018153
Physical Location & Seq
Forward (+)
18348733 .. 18362921
14189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG105300.1

Sequence Viewer

Length: 246 bp
ATGTTGGGAATTCTAATCGAATGCAATCTTACTCCTGCAGTGCACGGACTCATCTGCTGGTCCAATTTGCGGTTCATTCATGCCAATCTGAGACTGCTGCCTGTCATGACCTCTTCTATGCATACTATAACCTCTTCTATGCATTCCACTGAACAAAGCAGCTCAGCCGCAACCTTATACTACTGCTTCTTTCAACAATATAGGGATGATGTGTGGAGCCCCCAGATGAAGCTTTTAAGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.24

Weight (kDa)

6.88

Isoelectric Point (pI)

77.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018153)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322891
rosa_multiflora Rmu_sc0005970.1_g000010
rosa_roxburghii Rroxscaffold_3G00246540
rosa_rugosa Rorug07G0060200 Rorug07G0060200
rosa_samantha Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 70, 168
AcsI RAATTY 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 162, 232
AluI AGCT 2 cut(s) 162, 232
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 85
Alw44I GTGCAC 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 97, 159
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 60
AvaII GGWCC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 84, 171
BcoDI GTCTC 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 3 cut(s) 98, 160, 168
BlpI GCTNAGC 1 cut(s) 163
BlsI GCNGC 3 cut(s) 99, 161, 169
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 80, 177
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 2 cut(s) 84, 171
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 2 cut(s) 26, 142
Bsp1286I GDGCHC 2 cut(s) 45, 221
Bsp1720I GCTNAGC 1 cut(s) 163
BspACI CCGC 2 cut(s) 70, 168
BspCNI CTCAG 2 cut(s) 81, 176
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 118, 139
BstDEI CTNAG 2 cut(s) 89, 163
BstF5I GGATG 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 84, 171
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 147
CciI TCATGA 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 60
CviAII CATG 2 cut(s) 80, 106
CviJI RGCY 4 cut(s) 162, 167, 219, 232
CviKI_1 RGCY 4 cut(s) 162, 167, 219, 232
DdeI CTNAG 2 cut(s) 89, 163
Eam1104I CTCTTC 2 cut(s) 118, 139
EarI CTCTTC 2 cut(s) 118, 139
Eco24I GRGCYC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 9
EcoT22I ATGCAT 2 cut(s) 123, 144
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 2 cut(s) 83, 109
FaiI YATR 8 cut(s) 81, 107, 119, 123, 128, 140, 178, 201
FatI CATG 2 cut(s) 79, 105
Fnu4HI GCNGC 3 cut(s) 98, 160, 168
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 98, 160, 168
GluI GCNGC 3 cut(s) 98, 160, 168
Hin1II CATG 2 cut(s) 83, 109
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 24, 38, 43, 121, 142
HpyF3I CTNAG 2 cut(s) 89, 163
Hsp92II CATG 2 cut(s) 83, 109
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 43, 48, 114, 236
Lsp1109I GCAGC 2 cut(s) 84, 171
MboII GAAGA 2 cut(s) 105, 126
MhlI GDGCHC 2 cut(s) 45, 221
MluCI AATT 2 cut(s) 9, 64
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 2 cut(s) 121, 142
Mph1103I ATGCAT 2 cut(s) 123, 144
MseI TTAA 1 cut(s) 236
Mva1269I GAATGC 2 cut(s) 26, 142
NlaIII CATG 2 cut(s) 83, 109
NlaIV GGNNCC 1 cut(s) 218
NsiI ATGCAT 2 cut(s) 123, 144
PagI TCATGA 1 cut(s) 105
PctI GAATGC 2 cut(s) 26, 142
PkrI GCNGC 3 cut(s) 99, 161, 169
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 3 cut(s) 98, 160, 168
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 1 cut(s) 42
SduI GDGCHC 2 cut(s) 45, 221
SetI ASST 5 cut(s) 113, 134, 164, 176, 234
SfcI CTRYAG 1 cut(s) 36
SgeI CNNG 7 cut(s) 47, 56, 70, 92, 113, 118, 235
SinI GGWCC 1 cut(s) 60
Sse9I AATT 2 cut(s) 9, 64
SsiI CCGC 2 cut(s) 70, 168
TaqI TCGA 1 cut(s) 18
TasI AATT 2 cut(s) 9, 64
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 2 cut(s) 45, 154
TseI GCWGC 2 cut(s) 97, 159
TspDTI ATGAA 3 cut(s) 64, 68, 242
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 2 cut(s) 45, 154
VneI GTGCAC 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 9
Zsp2I ATGCAT 2 cut(s) 123, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.