Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018153

Physical Location & Seq

Genomic Coordinates Forward (+)

58952466 .. 58956566

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG362600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTTGGGTGGCAGAAAAAACAGTGCGGTTGTTGGCTTGCAATCGGTAAGCTGTTCAGGTGGTGGTGGTATGTTGGTGGATTTTGGGATTGTGTCACAGGTTGGGGGTGCTCTGTTGACACTATTCTGGTGGTTAGCAACAGCAGTGCGGACCGAGATGAGTGTTGTGGTCGTACGACAATGCGTTCTGGTAGTGGTGGCAATAACCAGTCTCCTTCGATTGCTCATGTTCAGATCATTGCTGGTGATCCAGAATGTGTTAGTGAGACATGGATGAGTAATGTATATAGTTTCGGGATGGTGATTTGGGAGATGGTGACTGGTGAGGCAGCCTACTCCGCATGTTCACTGGTCCAAGCAGCAGTTGGGATAGGTGCCTGTGGCCTCAGACCTGAGATTCCAAAGGACTGTCCACAAATGCTGAGATCCTTGATGACCAAGTGCTGGAACAACTCCCCCTCAAAGCGTCCTCAGTTCTCTGAAATTCTATCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.15

Weight (kDa)

6.53

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	90 - 163	2.2e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018153)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322891
rosa_multiflora	Rmu_sc0005970.1_g000010
rosa_roxburghii	Rroxscaffold_3G00246540
rosa_rugosa	Rorug07G0060200 Rorug07G0060200
rosa_samantha	Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	444
AciI	CCGC	3 cut(s)	27, 149, 339
AclWI	GGATC	2 cut(s)	242, 420
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	444
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	2 cut(s)	216, 260
AlwI	GGATC	2 cut(s)	242, 420
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	329, 359
ApoI	RAATTY	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	151, 352
AsuHPI	GGTGA	4 cut(s)	257, 313, 328, 335
AvaII	GGWCC	2 cut(s)	151, 352
BanI	GGYRCC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	341, 371
BccI	CCATC	2 cut(s)	292, 307
BcoDI	GTCTC	2 cut(s)	216, 260
BfmI	CTRYAG	1 cut(s)	494
BisI	GCNGC	2 cut(s)	330, 360
BlsI	GCNGC	2 cut(s)	331, 361
Bme18I	GGWCC	2 cut(s)	151, 352
BmgT120I	GGNCC	2 cut(s)	151, 352
BmiI	GGNNCC	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	3 cut(s)	208, 325, 354
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	279, 303
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	384, 400, 413, 485
BseNI	ACTGG	3 cut(s)	208, 325, 354
BseXI	GCAGC	2 cut(s)	341, 371
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	113
BsiWI	CGTACG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	216, 260
BsnI	GGCC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	234, 247, 425
BspACI	CCGC	3 cut(s)	27, 149, 339
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	4 cut(s)	385, 399, 414, 484
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	242, 420
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	208, 325, 354
BssMI	GATC	3 cut(s)	234, 247, 425
Bst4CI	ACNGT	2 cut(s)	24, 410
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	386, 393, 422, 471
BstF5I	GGATG	2 cut(s)	279, 303
BstKTI	GATC	3 cut(s)	237, 250, 428
BstMAI	GTCTC	2 cut(s)	216, 260
BstMBI	GATC	3 cut(s)	234, 247, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	341, 371
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	279, 303
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	3 cut(s)	29, 151, 347
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	151, 352
CpoI	CGGWCCG	1 cut(s)	151
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	174
CspI	CGGWCCG	1 cut(s)	151
CviAII	CATG	3 cut(s)	227, 270, 342
CviJI	RGCY	4 cut(s)	37, 52, 332, 384
CviKI_1	RGCY	4 cut(s)	37, 52, 332, 384
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	386, 393, 422, 471
DpnI	GATC	3 cut(s)	236, 249, 427
DpnII	GATC	3 cut(s)	234, 247, 425
Eco47I	GGWCC	2 cut(s)	151, 352
FaeI	CATG	3 cut(s)	230, 273, 345
FaiI	YATR	7 cut(s)	72, 228, 271, 286, 288, 343, 496
FatI	CATG	3 cut(s)	226, 269, 341
Fnu4HI	GCNGC	2 cut(s)	330, 360
FokI	GGATG	2 cut(s)	286, 310
Fsp4HI	GCNGC	2 cut(s)	330, 360
GluI	GCNGC	2 cut(s)	330, 360
HaeIII	GGCC	1 cut(s)	384
HgaI	GACGC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	230, 273, 345
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	397
HphI	GGTGA	4 cut(s)	257, 313, 328, 335
Hpy166II	GTNNAC	3 cut(s)	118, 347, 413
Hpy188I	TCNGA	3 cut(s)	234, 389, 481
Hpy188III	TCNNGA	2 cut(s)	251, 295
Hpy8I	GTNNAC	3 cut(s)	118, 347, 413
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	24, 410
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	4 cut(s)	386, 393, 422, 471
Hsp92II	CATG	3 cut(s)	230, 273, 345
Kzo9I	GATC	3 cut(s)	234, 247, 425
Lsp1109I	GCAGC	2 cut(s)	341, 371
MaeIII	GTNAC	2 cut(s)	94, 316
MalI	GATC	3 cut(s)	236, 249, 427
MboI	GATC	3 cut(s)	234, 247, 425
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	483
MnlI	CCTC	4 cut(s)	319, 395, 469, 480
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	3 cut(s)	234, 247, 425
NlaIII	CATG	3 cut(s)	230, 273, 345
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	94, 316
NspI	RCATGY	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	397
Pfl23II	CGTACG	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	331, 361
PspLI	CGTACG	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	151, 352
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
Rsr2I	CGGWCCG	1 cut(s)	151
RsrII	CGGWCCG	1 cut(s)	151
SatI	GCNGC	2 cut(s)	330, 360
Sau3AI	GATC	3 cut(s)	234, 247, 425
Sau96I	GGNCC	2 cut(s)	151, 352
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	5 cut(s)	54, 62, 103, 376, 394
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	2 cut(s)	151, 352
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	27, 149, 339
TaaI	ACNGT	2 cut(s)	24, 410
TaqI	TCGA	1 cut(s)	218
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	3 cut(s)	29, 151, 354
TseFI	GTSAC	2 cut(s)	94, 316
TseI	GCWGC	2 cut(s)	329, 359
Tsp45I	GTSAC	2 cut(s)	94, 316
TspRI	CASTG	3 cut(s)	29, 151, 354
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	151, 352
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.