Rh5AG387500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018153
Physical Location & Seq
Forward (+)
67029732 .. 67030581
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG387500.1

Sequence Viewer

Length: 333 bp
ATGGTATATCCCACTAAAGTATTTACTGTTTTCTTTTACCTCTTTGGTTTTACACAGATCATTGCTGGTGATCCAGAATGTGTTAGTGAGACATGGATGAGTAATGTATATAGTTTCGGGATGGTGACTGGTGAGGCAGCCTACTCCACATGTTCACCGGTCCAAGCAGCAGTTGGGATAGCTGCCTGTGGCCTCAGACCTGAGATTCCAAAGGACTATCCACAAATGCTGAGATCCTTGACGAACAAGTGCTGGAACAACTCCCCCTCAAAGCGTCCTCAGTTCTTTGAAATTCTATCACTATTGCTGCGGACCAACAACAATGTAAGGTGA

Protein Analysis

110

Amino Acids

12.37

Weight (kDa)

8.41

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 31 - 101 8.1e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018153)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322891
rosa_multiflora Rmu_sc0005970.1_g000010
rosa_roxburghii Rroxscaffold_3G00246540
rosa_rugosa Rorug07G0060200 Rorug07G0060200
rosa_samantha Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AclWI GGATC 2 cut(s) 65, 228
AcsI RAATTY 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 149
AgeI ACCGGT 1 cut(s) 157
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 65, 228
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 4 cut(s) 137, 167, 182, 307
ApoI RAATTY 1 cut(s) 291
AsiGI ACCGGT 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 160, 312
AsuHPI GGTGA 4 cut(s) 80, 136, 143, 147
AvaII GGWCC 2 cut(s) 160, 312
BbvI GCAGC 4 cut(s) 149, 169, 179, 294
BccI CCATC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 83
BisI GCNGC 4 cut(s) 138, 168, 183, 308
BlsI GCNGC 4 cut(s) 139, 169, 184, 309
Bme18I GGWCC 2 cut(s) 160, 312
BmgT120I GGNCC 2 cut(s) 160, 312
BsaWI WCCGGW 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 60
BseGI GGATG 2 cut(s) 102, 126
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 4 cut(s) 192, 208, 221, 293
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 4 cut(s) 149, 169, 179, 294
BshFI GGCC 1 cut(s) 192
BshTI ACCGGT 1 cut(s) 157
BsiSI CCGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 57, 70, 233
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 4 cut(s) 193, 207, 222, 292
BspPI GGATC 2 cut(s) 65, 228
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 3 cut(s) 57, 70, 233
Bst4CI ACNGT 1 cut(s) 28
BstDEI CTNAG 4 cut(s) 194, 201, 230, 279
BstF5I GGATG 2 cut(s) 102, 126
BstKTI GATC 3 cut(s) 60, 73, 236
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 57, 70, 233
BstNSI RCATGY 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 149, 169, 179, 294
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 102, 126
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 160, 312
CseI GACGC 1 cut(s) 263
CspAI ACCGGT 1 cut(s) 157
CviAII CATG 2 cut(s) 93, 150
CviJI RGCY 3 cut(s) 140, 182, 192
CviKI_1 RGCY 3 cut(s) 140, 182, 192
DdeI CTNAG 4 cut(s) 194, 201, 230, 279
DpnI GATC 3 cut(s) 59, 72, 235
DpnII GATC 3 cut(s) 57, 70, 233
Eco47I GGWCC 2 cut(s) 160, 312
FaeI CATG 2 cut(s) 96, 153
FaiI YATR 5 cut(s) 7, 94, 109, 111, 151
FatI CATG 2 cut(s) 92, 149
Fnu4HI GCNGC 4 cut(s) 138, 168, 183, 308
FokI GGATG 2 cut(s) 109, 133
Fsp4HI GCNGC 4 cut(s) 138, 168, 183, 308
GluI GCNGC 4 cut(s) 138, 168, 183, 308
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 96, 153
HinfI GANTC 1 cut(s) 205
HpaII CCGG 1 cut(s) 158
HphI GGTGA 4 cut(s) 80, 136, 143, 147
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 74, 118
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 28
HpyF3I CTNAG 4 cut(s) 194, 201, 230, 279
Hsp92II CATG 2 cut(s) 96, 153
Kzo9I GATC 3 cut(s) 57, 70, 233
LpnPI CCDG 7 cut(s) 51, 87, 114, 171, 199, 213, 238
Lsp1109I GCAGC 4 cut(s) 149, 169, 179, 294
MaeIII GTNAC 1 cut(s) 124
MalI GATC 3 cut(s) 59, 72, 235
MboI GATC 3 cut(s) 57, 70, 233
MflI RGATCY 1 cut(s) 233
MluCI AATT 1 cut(s) 291
MnlI CCTC 5 cut(s) 50, 127, 203, 277, 288
MspI CCGG 1 cut(s) 158
NdeII GATC 3 cut(s) 57, 70, 233
NlaIII CATG 2 cut(s) 96, 153
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 153
PciI ACATGT 1 cut(s) 149
PfeI GAWTC 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 157
PkrI GCNGC 4 cut(s) 139, 169, 184, 309
PscI ACATGT 1 cut(s) 149
PspPI GGNCC 2 cut(s) 160, 312
PsuI RGATCY 1 cut(s) 233
SatI GCNGC 4 cut(s) 138, 168, 183, 308
Sau3AI GATC 3 cut(s) 57, 70, 233
Sau96I GGNCC 2 cut(s) 160, 312
SetI ASST 4 cut(s) 42, 184, 202, 332
SinI GGWCC 2 cut(s) 160, 312
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 310
TaaI ACNGT 1 cut(s) 28
TasI AATT 1 cut(s) 291
TfiI GAWTC 1 cut(s) 205
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 4 cut(s) 137, 167, 182, 307
Tsp45I GTSAC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 160, 312
XapI RAATTY 1 cut(s) 291
XceI RCATGY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.