Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018153

Physical Location & Seq

Genomic Coordinates Forward (+)

46790777 .. 46793101

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGTAATGTATATAGTTTCGGGATGGTGATTTGGGAGATGGTGACTGGTGAGGCAGCCTACTCCGCATGTTCACTGGTCCAAGCAGCAGTTGGGATAGGTGCCTGTGGCCTCAGACCTGAGATTCCAAAGGACTGTCCACAAATGCTGAGATCCTTGATGACCAAGTGCTGGAACAACTCCCCCTCAAAGCGTCCTCAGTTCTCTGAAATTCTATCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

7.64

Isoelectric Point (pI)

72.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 72	8.3e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018153)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322891
rosa_multiflora	Rmu_sc0005970.1_g000010
rosa_roxburghii	Rroxscaffold_3G00246540
rosa_rugosa	Rorug07G0060200 Rorug07G0060200
rosa_samantha	Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	171
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	56, 86
ApoI	RAATTY	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	40, 55, 62
AvaII	GGWCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	68, 98
BccI	CCATC	2 cut(s)	19, 34
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	57, 87
BlsI	GCNGC	2 cut(s)	58, 88
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	52, 81
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	4 cut(s)	111, 127, 140, 212
BseNI	ACTGG	2 cut(s)	52, 81
BseXI	GCAGC	2 cut(s)	68, 98
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	171
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	4 cut(s)	112, 126, 141, 211
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	52, 81
BssMI	GATC	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	137
BstDEI	CTNAG	4 cut(s)	113, 120, 149, 198
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	68, 98
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	182
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	2 cut(s)	59, 111
CviKI_1	RGCY	2 cut(s)	59, 111
DdeI	CTNAG	4 cut(s)	113, 120, 149, 198
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	79
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	13, 15, 70, 223
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	57, 87
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	57, 87
GluI	GCNGC	2 cut(s)	57, 87
HaeIII	GGCC	1 cut(s)	111
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	72
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	3 cut(s)	40, 55, 62
Hpy166II	GTNNAC	2 cut(s)	74, 140
Hpy188I	TCNGA	2 cut(s)	116, 208
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	74, 140
HpyCH4III	ACNGT	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	4 cut(s)	113, 120, 149, 198
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	152
LpnPI	CCDG	5 cut(s)	33, 62, 118, 132, 157
Lsp1109I	GCAGC	2 cut(s)	68, 98
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	4 cut(s)	46, 122, 196, 207
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	58, 88
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	152
SatI	GCNGC	2 cut(s)	57, 87
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	79
SetI	ASST	2 cut(s)	103, 121
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	137
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	56, 86
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.