Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018153

Physical Location & Seq

Genomic Coordinates Forward (+)

62290452 .. 62292571

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGACTATGCAGTCCCCGAATCTGCCTCCGCACCTTCTTACACAATGACGCCAAAATTCACCGGACTCTCGAAGCCAGTCTTATACAACGCAAACTCTCCTCAGTCGTTCTTCGCTTCAGCCTCGTCTCTCCCTCATTTTTTTTTTCGCTTCAGTCTCCTTCGATTGCTCATGTTCAGGGACTCATCTGCTGGTCCAATTTGCGGTTCATTCATGCCAATCTGAGACTGATCATTGCTGGTGATCCAGAATGTGTTAGTGAGACATGGATGAGTAATGTATATAGTTTCGGGATGGTGATTTGGGAGATGGTGACTGGTGAGGCAGCCTACTCCGCATGTTCACTGGTCCAAGCAGCAGTTGGGATAGGTGCCTGTGGCCTCAGACCTGAGATTCCAAAGGACTGTCCACAAATGCTGAGATCCTTGATGACCAAGTGCTGGAACAACTCCCCCTCAAAGCGTCCTCAGTTCTCTGAAATTCTATCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.38

Weight (kDa)

9.06

Isoelectric Point (pI)

68.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	89 - 162	2.8e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018153)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322891
rosa_multiflora	Rmu_sc0005970.1_g000010
rosa_roxburghii	Rroxscaffold_3G00246540
rosa_rugosa	Rorug07G0060200 Rorug07G0060200
rosa_samantha	Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	3 cut(s)	31, 205, 336
AclWI	GGATC	2 cut(s)	239, 417
AcsI	RAATTY	2 cut(s)	57, 480
AcuI	CTGAAG	2 cut(s)	103, 137
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	204, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
Alw26I	GTCTC	4 cut(s)	133, 162, 220, 257
AlwI	GGATC	2 cut(s)	239, 417
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	326, 356
ApoI	RAATTY	2 cut(s)	57, 480
AspS9I	GGNCC	2 cut(s)	195, 349
AsuHPI	GGTGA	5 cut(s)	53, 254, 310, 325, 332
AvaII	GGWCC	2 cut(s)	195, 349
BanI	GGYRCC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	338, 368
BccI	CCATC	2 cut(s)	289, 304
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	4 cut(s)	133, 162, 220, 257
BfmI	CTRYAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	327, 357
BlsI	GCNGC	2 cut(s)	328, 358
Bme18I	GGWCC	2 cut(s)	195, 349
BmgT120I	GGNCC	2 cut(s)	195, 349
BmiI	GGNNCC	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 441
Bse1I	ACTGG	3 cut(s)	78, 322, 351
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	276, 300
BseLI	CCNNNNNNNGG	2 cut(s)	204, 441
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	6 cut(s)	117, 215, 381, 397, 410, 482
BseNI	ACTGG	3 cut(s)	78, 322, 351
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	338, 368
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	204, 441
BsmAI	GTCTC	4 cut(s)	133, 162, 220, 257
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	231, 244, 422
BspACI	CCGC	3 cut(s)	31, 205, 336
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	6 cut(s)	116, 216, 382, 396, 411, 481
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	239, 417
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	3 cut(s)	78, 322, 351
BssMI	GATC	3 cut(s)	231, 244, 422
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	51
BstDEI	CTNAG	6 cut(s)	103, 224, 383, 390, 419, 468
BstF5I	GGATG	2 cut(s)	276, 300
BstKTI	GATC	3 cut(s)	234, 247, 425
BstMAI	GTCTC	4 cut(s)	133, 162, 220, 257
BstMBI	GATC	3 cut(s)	231, 244, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	338, 368
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	276, 300
BtsIMutI	CAGTG	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	195, 349
CseI	GACGC	2 cut(s)	59, 452
CviAII	CATG	4 cut(s)	173, 215, 267, 339
CviJI	RGCY	4 cut(s)	77, 123, 329, 381
CviKI_1	RGCY	4 cut(s)	77, 123, 329, 381
DdeI	CTNAG	6 cut(s)	103, 224, 383, 390, 419, 468
DpnI	GATC	3 cut(s)	233, 246, 424
DpnII	GATC	3 cut(s)	231, 244, 422
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	195, 349
Eco57I	CTGAAG	2 cut(s)	103, 137
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	4 cut(s)	176, 218, 270, 342
FaiI	YATR	9 cut(s)	10, 86, 174, 216, 268, 283, 285, 340, 493
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	4 cut(s)	172, 214, 266, 338
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	327, 357
FokI	GGATG	2 cut(s)	283, 307
Fsp4HI	GCNGC	2 cut(s)	327, 357
GluI	GCNGC	2 cut(s)	327, 357
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	2 cut(s)	59, 452
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	176, 218, 270, 342
HinfI	GANTC	4 cut(s)	21, 67, 183, 394
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	5 cut(s)	53, 254, 310, 325, 332
Hpy166II	GTNNAC	2 cut(s)	344, 410
Hpy188I	TCNGA	3 cut(s)	225, 386, 478
Hpy188III	TCNNGA	3 cut(s)	71, 248, 292
Hpy8I	GTNNAC	2 cut(s)	344, 410
HpyAV	CCTTC	2 cut(s)	46, 171
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	6 cut(s)	103, 224, 383, 390, 419, 468
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	176, 218, 270, 342
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	231, 244, 422
Lsp1109I	GCAGC	2 cut(s)	338, 368
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	233, 246, 424
MboI	GATC	3 cut(s)	231, 244, 422
MboII	GAAGA	1 cut(s)	104
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	3 cut(s)	57, 199, 480
MlyI	GAGTC	2 cut(s)	61, 177
MnlI	CCTC	8 cut(s)	38, 112, 134, 145, 316, 392, 466, 477
MspI	CCGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	3 cut(s)	231, 244, 422
NlaIII	CATG	4 cut(s)	176, 218, 270, 342
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	21, 394
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	328, 358
PleI	GAGTC	2 cut(s)	61, 177
PpsI	GAGTC	2 cut(s)	61, 177
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	195, 349
PsuI	RGATCY	1 cut(s)	422
SatI	GCNGC	2 cut(s)	327, 357
Sau3AI	GATC	3 cut(s)	231, 244, 422
Sau96I	GGNCC	2 cut(s)	195, 349
SchI	GAGTC	2 cut(s)	61, 177
SetI	ASST	3 cut(s)	38, 373, 391
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	195, 349
Sse9I	AATT	3 cut(s)	57, 199, 480
SsiI	CCGC	3 cut(s)	31, 205, 336
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	72, 164
TasI	AATT	3 cut(s)	57, 199, 480
TfiI	GAWTC	2 cut(s)	21, 394
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	326, 356
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	199, 203
TspRI	CASTG	1 cut(s)	351
Van91I	CCANNNNNTGG	1 cut(s)	441
VpaK11BI	GGWCC	2 cut(s)	195, 349
XapI	RAATTY	2 cut(s)	57, 480
XceI	RCATGY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.