Rmu_sc0005970.1_g000010

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005970.1
OG0018153
Physical Location & Seq
Reverse (-)
46721 .. 47068
348 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
atggtatatcccactaaagtatttactgttttcttttacctctttggttttacacagatcattgctggtggtccagaatgtgttagtgagacatggatgagtaatgtatatagtttcgggatgatgatttgggagatggtgactggtgaggcagcctactccgcatgttcaccggtccaagcagcagttgggatagctgcctgtggcctcagacctgagattccaaaggactgtccacaaatgctgagatccttgatgaccaagtgctggaacaactccccctcaaagcgtcctcagttctctgaaattctttcactattgctgcggaccaacaacaatgttaggtga

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

8.33

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 31 - 106 2.8e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018153)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322891
rosa_multiflora Rmu_sc0005970.1_g000010
rosa_roxburghii Rroxscaffold_3G00246540
rosa_rugosa Rorug07G0060200 Rorug07G0060200
rosa_samantha Rh1BG105300 Rh1BG155500 Rh1BG331200 Rh1CG345300 Rh1DG362600 Rh5AG387500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 2 cut(s) 162, 325
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 267
AgeI ACCGGT 1 cut(s) 172
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 243
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 152, 182, 197, 322
ApoI RAATTY 1 cut(s) 306
AsiGI ACCGGT 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 71, 175, 327
AsuHPI GGTGA 3 cut(s) 151, 158, 162
AvaII GGWCC 3 cut(s) 71, 175, 327
BbvI GCAGC 4 cut(s) 164, 184, 194, 309
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 83
BisI GCNGC 4 cut(s) 153, 183, 198, 323
BlsI GCNGC 4 cut(s) 154, 184, 199, 324
Bme18I GGWCC 3 cut(s) 71, 175, 327
BmgT120I GGNCC 3 cut(s) 71, 175, 327
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 60
BseGI GGATG 2 cut(s) 102, 126
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 4 cut(s) 207, 223, 236, 308
BseNI ACTGG 1 cut(s) 148
BseXI GCAGC 4 cut(s) 164, 184, 194, 309
BshFI GGCC 1 cut(s) 207
BshTI ACCGGT 1 cut(s) 172
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 57, 248
BspACI CCGC 2 cut(s) 162, 325
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 4 cut(s) 208, 222, 237, 307
BspPI GGATC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 1 cut(s) 172
BssMI GATC 2 cut(s) 57, 248
Bst4CI ACNGT 2 cut(s) 28, 233
BstDEI CTNAG 4 cut(s) 209, 216, 245, 294
BstF5I GGATG 2 cut(s) 102, 126
BstKTI GATC 2 cut(s) 60, 251
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 57, 248
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 168
BstV1I GCAGC 4 cut(s) 164, 184, 194, 309
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 102, 126
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 71, 175, 327
CseI GACGC 1 cut(s) 278
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 2 cut(s) 93, 165
CviJI RGCY 3 cut(s) 155, 197, 207
CviKI_1 RGCY 3 cut(s) 155, 197, 207
DdeI CTNAG 4 cut(s) 209, 216, 245, 294
DpnI GATC 2 cut(s) 59, 250
DpnII GATC 2 cut(s) 57, 248
Eco47I GGWCC 3 cut(s) 71, 175, 327
FaeI CATG 2 cut(s) 96, 168
FaiI YATR 5 cut(s) 7, 94, 109, 111, 166
FatI CATG 2 cut(s) 92, 164
Fnu4HI GCNGC 4 cut(s) 153, 183, 198, 323
FokI GGATG 2 cut(s) 109, 133
Fsp4HI GCNGC 4 cut(s) 153, 183, 198, 323
GluI GCNGC 4 cut(s) 153, 183, 198, 323
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 278
Hin1II CATG 2 cut(s) 96, 168
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 173
HphI GGTGA 3 cut(s) 151, 158, 162
Hpy166II GTNNAC 2 cut(s) 170, 236
Hpy188I TCNGA 2 cut(s) 212, 304
Hpy188III TCNNGA 2 cut(s) 74, 118
Hpy8I GTNNAC 2 cut(s) 170, 236
HpyCH4III ACNGT 2 cut(s) 28, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 4 cut(s) 209, 216, 245, 294
Hsp92II CATG 2 cut(s) 96, 168
Kzo9I GATC 2 cut(s) 57, 248
LpnPI CCDG 7 cut(s) 51, 87, 129, 186, 214, 228, 253
Lsp1109I GCAGC 4 cut(s) 164, 184, 194, 309
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 59, 250
MboI GATC 2 cut(s) 57, 248
MflI RGATCY 1 cut(s) 248
MluCI AATT 1 cut(s) 306
MnlI CCTC 5 cut(s) 50, 142, 218, 292, 303
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 2 cut(s) 57, 248
NlaIII CATG 2 cut(s) 96, 168
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 1 cut(s) 168
PfeI GAWTC 1 cut(s) 220
PflMI CCANNNNNTGG 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 4 cut(s) 154, 184, 199, 324
PspPI GGNCC 3 cut(s) 71, 175, 327
PsuI RGATCY 1 cut(s) 248
SatI GCNGC 4 cut(s) 153, 183, 198, 323
Sau3AI GATC 2 cut(s) 57, 248
Sau96I GGNCC 3 cut(s) 71, 175, 327
SetI ASST 4 cut(s) 42, 199, 217, 347
SinI GGWCC 3 cut(s) 71, 175, 327
Sse9I AATT 1 cut(s) 306
SsiI CCGC 2 cut(s) 162, 325
TaaI ACNGT 2 cut(s) 28, 233
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 220
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 152, 182, 197, 322
Tsp45I GTSAC 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 3 cut(s) 71, 175, 327
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.