Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005982.1

Orthogroup ID

OG0005838

Physical Location & Seq

Genomic Coordinates Forward (+)

37047 .. 39948

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005982.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

atgccagttgatgttgaagacgaattttcgtttaatcgtctttctatcgaggaaaattctcttcacagcctcagtagcaactatagtgtatgctctccaaccaacgacggtagcactagtgttcctcattcacctcctccacctactggaccttacaagagaaggaaaatagcaaactccattaatattggagatggagttgatgtaaattctgatgagtttcaagatggcgagacctatgctagtgactacgaagatgctgttgaagatacccaggacatgaaagatgatataccagtgaatgtaaagacctatatggacagtcaagaggcttttgatgctactcagtacagggaagatggtatacctgtgcatgttgagacatgtaacagtgactgtgaagatgctgttgaagctactcagtacagtgatgtcttgattttgttcaggttcaatgaccatgatctcccgtttaaactcagggatataataatgtctgatctccggttattgaccttgctagaggctgggcttccttcttgggctatcttccttcagtcttacccagggtttcgcaaaatttatcgcccgtggatgtgtcctcttgcaagagctttatatgtggtgatctcagttgccaccgtcctaattggattttatgacctgtacaaaaatgttccagttctcaaggtaactgcatctcgtatttgtgggcctctatttgattggatagagacctggtcgatggtaacaaggatcaaatacttgggaacaatgctatttctgcatcactctcagaaggttgttcagtggttcttgactatcaggagtaccactcgatcctttttttcagtttttgcccggccgatgttcgaacctttcgtagagtgctttagcttccttctcccagtttggaatgtgttttttgaggtattggggagcatctgtacaatgattttgtttctgattgagtcttcttgcaatatagtggagaacctggtggaggttttactgtttccaatatggtttttcctgtcgtccatctggagcattgccacttctgtcatatatcctatatttgggatgctgtgggcaatactctatgctccaattcacatgtttcttgcactagccaatttcattgcctttctttttacttgtatatatgacactcttcgagaaacatggaagtttattggcagcatattccagtttgcttcagcctctcaggcaacagtgaggactgttgaagtttccatatggcgttcactttggaatgacctcttttcacagattttccgtgctcttaggagtatattaaacggttttgttgcattcttcacagcttgtaacaggcatcggctgagcatctataatcatatacaagagtttaaccaaagattactaaatcgaaccaaaagatcacggcgtgaagattcgagacgtagcaggcagaccattgaggctcagcagctgcagttaaaaatgaggaggaaaattgcccataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

503

Amino Acids

58.28

Weight (kDa)

5.75

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32970 AT2G32970 AT2G32970 AT2G32970
fragaria_vesca	FvH4_6g42290 FvH4_6g42290 FvH4_6g42290 FvH4_6g42290 FvH4_6g42290 FvH4_6g42290
malus_domestica	MD09G1113700.v1.1 MD17G1103800.v1.1
prunus_persica	Prupe.3G210900_v2.0.a1 Prupe.3G210900_v2.0.a1 Prupe.3G210900_v2.0.a1 Prupe.3G210900_v2.0.a1
pyrus_communis	pycom17g09790
rosa_chinensis	RchiOBHm_Chr2g0158131
rosa_laevigata	RLG00000021062
rosa_multiflora	Rmu_sc0005982.1_g000008 Rmu_sc0018610.1_g000001 Rmu_sc0032555.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091640
rosa_samantha	Rh2AG532300 Rh2BG546400 Rh2CG516200 Rh2DG554900
rosa_wichuraiana	Rw2G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	364
AclWI	GGATC	2 cut(s)	764, 834
AcoI	YGGCCR	1 cut(s)	863
AcsI	RAATTY	4 cut(s)	23, 55, 208, 579
AcuI	CTGAAG	2 cut(s)	539, 1203
AdeI	CACNNNGTG	1 cut(s)	1430
AfaI	GTAC	5 cut(s)	350, 425, 668, 832, 949
AfiI	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
AflIII	ACRYGT	2 cut(s)	383, 1116
AgsI	TTSAA	6 cut(s)	17, 224, 266, 413, 454, 1250
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	4 cut(s)	273, 565, 737, 996
AluBI	AGCT	5 cut(s)	416, 614, 897, 1346, 1474
AluI	AGCT	5 cut(s)	416, 614, 897, 1346, 1474
Alw21I	GWGCWC	1 cut(s)	1306
Alw26I	GTCTC	4 cut(s)	227, 374, 728, 1435
AlwI	GGATC	2 cut(s)	764, 834
AlwNI	CAGNNNCTG	2 cut(s)	396, 1474
AoxI	GGCC	2 cut(s)	713, 863
ApeKI	GCWGC	3 cut(s)	1200, 1471, 1474
ApoI	RAATTY	4 cut(s)	23, 55, 208, 579
AseI	ATTAAT	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	149, 713
AsuC2I	CCSGG	1 cut(s)	862
AsuHPI	GGTGA	2 cut(s)	123, 637
AsuII	TTCGAA	1 cut(s)	873
AvaII	GGWCC	1 cut(s)	149
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbsI	GAAGAC	2 cut(s)	24, 966
Bbv12I	GWGCWC	1 cut(s)	1306
BbvI	GCAGC	3 cut(s)	1212, 1461, 1483
BccI	CCATC	5 cut(s)	188, 221, 353, 739, 1049
BceAI	ACGGC	1 cut(s)	1442
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	4 cut(s)	275, 567, 739, 998
BcnI	CCSGG	1 cut(s)	862
BcoDI	GTCTC	4 cut(s)	227, 374, 728, 1435
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	117, 243, 521, 1130
BfmI	CTRYAG	2 cut(s)	82, 1475
BglI	GCCNNNNNGGC	1 cut(s)	1229
BisI	GCNGC	3 cut(s)	1201, 1472, 1475
BlpI	GCTNAGC	2 cut(s)	1364, 1467
BlsI	GCNGC	3 cut(s)	1202, 1473, 1476
Bme1390I	CCNGG	5 cut(s)	275, 567, 739, 862, 998
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 713
BmrFI	CCNGG	5 cut(s)	275, 567, 739, 862, 998
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	9 cut(s)	247, 328, 394, 707, 796, 951, 1074, 1366, 1377
BmuI	ACTGGG	1 cut(s)	902
BpiI	GAAGAC	2 cut(s)	24, 966
BplI	GAGNNNNNCTC	2 cut(s)	820, 852
BpmI	CTGGAG	1 cut(s)	1066
Bpu1102I	GCTNAGC	2 cut(s)	1364, 1467
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	862
BsaI	GGTCTC	2 cut(s)	227, 728
BsaJI	CCNNGG	4 cut(s)	273, 565, 566, 590
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	6 cut(s)	183, 189, 213, 219, 931, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
Bse1I	ACTGG	6 cut(s)	5, 151, 296, 680, 908, 1210
Bse3DI	GCAATG	2 cut(s)	1050, 1140
BseBI	CCWGG	4 cut(s)	275, 567, 739, 998
BseDI	CCNNGG	4 cut(s)	273, 565, 566, 590
BseGI	GGATG	2 cut(s)	600, 1089
BseLI	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
BseMI	GCAATG	2 cut(s)	1050, 1140
BseMII	CTCAG	9 cut(s)	85, 359, 434, 493, 645, 809, 1241, 1355, 1481
BseNI	ACTGG	6 cut(s)	5, 151, 296, 680, 908, 1210
BseRI	GAGGAG	2 cut(s)	126, 1504
BseX3I	CGGCCG	1 cut(s)	863
BseXI	GCAGC	3 cut(s)	1212, 1461, 1483
BseYI	CCCAGC	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	866
BshFI	GGCC	2 cut(s)	715, 865
BsiEI	CGRYCG	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	1306
BsiSI	CCGG	2 cut(s)	505, 862
BslI	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
BsmAI	GTCTC	4 cut(s)	227, 374, 728, 1435
BsmBI	CGTCTC	1 cut(s)	1435
BsmI	GAATGC	1 cut(s)	1334
BsnI	GGCC	2 cut(s)	715, 865
Bso31I	GGTCTC	2 cut(s)	227, 728
Bsp119I	TTCGAA	1 cut(s)	873
Bsp1286I	GDGCHC	1 cut(s)	1306
Bsp1407I	TGTACA	2 cut(s)	666, 947
Bsp143I	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
Bsp1720I	GCTNAGC	2 cut(s)	1364, 1467
BspANI	GGCC	2 cut(s)	715, 865
BspCNI	CTCAG	9 cut(s)	84, 358, 433, 492, 644, 808, 1240, 1356, 1480
BspMAI	CTGCAG	1 cut(s)	1479
BspPI	GGATC	2 cut(s)	764, 834
BspT104I	TTCGAA	1 cut(s)	873
BspTNI	GGTCTC	2 cut(s)	227, 728
BsrDI	GCAATG	2 cut(s)	1050, 1140
BsrGI	TGTACA	2 cut(s)	666, 947
BsrI	ACTGG	6 cut(s)	5, 151, 296, 680, 908, 1210
BssECI	CCNNGG	4 cut(s)	273, 565, 566, 590
BssMI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
BssNAI	GTATAC	1 cut(s)	365
Bst1107I	GTATAC	1 cut(s)	365
Bst2UI	CCWGG	4 cut(s)	275, 567, 739, 998
Bst6I	CTCTTC	2 cut(s)	66, 1179
BstAUI	TGTACA	2 cut(s)	666, 947
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	1451
BstDSI	CCRYGG	1 cut(s)	590
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	2 cut(s)	600, 1089
BstKTI	GATC	6 cut(s)	466, 502, 630, 759, 842, 1424
BstMAI	GTCTC	4 cut(s)	227, 374, 728, 1435
BstMBI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
BstMCI	CGRYCG	1 cut(s)	866
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 338, 413, 784, 1229
BstNI	CCWGG	4 cut(s)	275, 567, 739, 998
BstNSI	RCATGY	3 cut(s)	377, 387, 1120
BstSCI	CCNGG	5 cut(s)	273, 565, 737, 860, 996
BstSFI	CTRYAG	2 cut(s)	82, 1475
BstV1I	GCAGC	3 cut(s)	1212, 1461, 1483
BstV2I	GAAGAC	2 cut(s)	24, 966
BstZ17I	GTATAC	1 cut(s)	365
BstZI	CGGCCG	1 cut(s)	863
BsuRI	GGCC	2 cut(s)	715, 865
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	600, 1089
BtsIMutI	CAGTG	5 cut(s)	303, 397, 433, 815, 1242
Cac8I	GCNNGC	1 cut(s)	1451
CaiI	CAGNNNCTG	2 cut(s)	396, 1474
Cfr13I	GGNCC	2 cut(s)	149, 713
CsiI	ACCWGGT	2 cut(s)	737, 996
Csp6I	GTAC	5 cut(s)	349, 424, 667, 831, 948
CviAII	CATG	6 cut(s)	280, 374, 384, 461, 1117, 1185
CviQI	GTAC	5 cut(s)	349, 424, 667, 831, 948
DpnI	GATC	6 cut(s)	465, 501, 629, 758, 841, 1423
DpnII	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
DraI	TTTAAA	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	1430
EaeI	YGGCCR	1 cut(s)	863
EagI	CGGCCG	1 cut(s)	863
Eam1104I	CTCTTC	2 cut(s)	66, 1179
EarI	CTCTTC	2 cut(s)	66, 1179
EclXI	CGGCCG	1 cut(s)	863
Eco31I	GGTCTC	2 cut(s)	227, 728
Eco47I	GGWCC	1 cut(s)	149
Eco52I	CGGCCG	1 cut(s)	863
Eco57I	CTGAAG	2 cut(s)	539, 1203
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoRII	CCWGG	4 cut(s)	273, 565, 737, 996
Esp3I	CGTCTC	1 cut(s)	1435
FaeI	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
FatI	CATG	6 cut(s)	279, 373, 383, 460, 1116, 1184
FauNDI	CATATG	1 cut(s)	1259
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	1201, 1472, 1475
FokI	GGATG	2 cut(s)	607, 1096
Fsp4HI	GCNGC	3 cut(s)	1201, 1472, 1475
FspBI	CTAG	4 cut(s)	117, 243, 521, 1130
GluI	GCNGC	3 cut(s)	1201, 1472, 1475
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	1066
HaeIII	GGCC	2 cut(s)	715, 865
HapII	CCGG	2 cut(s)	505, 862
Hin1II	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
HinfI	GANTC	2 cut(s)	971, 1436
HpaII	CCGG	2 cut(s)	505, 862
HphI	GGTGA	2 cut(s)	123, 637
Hpy166II	GTNNAC	2 cut(s)	365, 1268
Hpy188I	TCNGA	4 cut(s)	214, 499, 798, 966
Hpy188III	TCNNGA	8 cut(s)	224, 326, 436, 817, 826, 1045, 1178, 1440
Hpy8I	GTNNAC	2 cut(s)	365, 1268
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	156, 546, 563, 793, 911
HpyCH4IV	ACGT	1 cut(s)	1444
HpyCH4V	TGCA	8 cut(s)	373, 608, 698, 787, 981, 1127, 1334, 1477
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 338, 413, 784, 1229
HpySE526I	ACGT	1 cut(s)	1444
Hsp92II	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
Kzo9I	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
LmnI	GCTCC	3 cut(s)	939, 1047, 1111
Lsp1109I	GCAGC	3 cut(s)	1212, 1461, 1483
LweI	GCATC	9 cut(s)	247, 328, 394, 707, 796, 951, 1074, 1366, 1377
MabI	ACCWGGT	2 cut(s)	737, 996
MaeI	CTAG	4 cut(s)	117, 243, 521, 1130
MaeII	ACGT	1 cut(s)	1444
MaeIII	GTNAC	6 cut(s)	245, 386, 392, 691, 748, 1349
MalI	GATC	6 cut(s)	465, 501, 629, 758, 841, 1423
MboI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
MhlI	GDGCHC	1 cut(s)	1306
MluCI	AATT	9 cut(s)	23, 55, 208, 579, 648, 1110, 1135, 1497, 1507
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	1 cut(s)	122
MseI	TTAA	6 cut(s)	33, 183, 474, 1319, 1392, 1481
MspA1I	CMGCKG	1 cut(s)	1474
MspI	CCGG	2 cut(s)	505, 862
MspR9I	CCNGG	5 cut(s)	275, 567, 739, 862, 998
MssI	GTTTAAAC	1 cut(s)	475
Mva1269I	GAATGC	1 cut(s)	1334
MvaI	CCWGG	4 cut(s)	275, 567, 739, 998
MwoI	GCNNNNNNNGC	5 cut(s)	75, 338, 413, 784, 1229
NciI	CCSGG	1 cut(s)	862
NdeI	CATATG	1 cut(s)	1259
NdeII	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
NlaIII	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
NmuCI	GTSAC	2 cut(s)	245, 392
NspI	RCATGY	3 cut(s)	377, 387, 1120
NspV	TTCGAA	1 cut(s)	873
PasI	CCCWGGG	1 cut(s)	566
PciI	ACATGT	2 cut(s)	383, 1116
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PctI	GAATGC	1 cut(s)	1334
PfeI	GAWTC	1 cut(s)	1436
PflFI	GACNNNGTC	1 cut(s)	739
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	1202, 1473, 1476
PleI	GAGTC	1 cut(s)	979
PmeI	GTTTAAAC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	979
PscI	ACATGT	2 cut(s)	383, 1116
PshBI	ATTAAT	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	273, 565, 737, 996
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	273, 565, 737, 996
PspPI	GGNCC	2 cut(s)	149, 713
PstI	CTGCAG	1 cut(s)	1479
PstNI	CAGNNNCTG	2 cut(s)	396, 1474
PsyI	GACNNNGTC	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	1474
RsaI	GTAC	5 cut(s)	350, 425, 668, 832, 949
RsaNI	GTAC	5 cut(s)	349, 424, 667, 831, 948
SaqAI	TTAA	6 cut(s)	33, 183, 474, 1319, 1392, 1481
SatI	GCNGC	3 cut(s)	1201, 1472, 1475
Sau3AI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1421
Sau96I	GGNCC	2 cut(s)	149, 713
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	5 cut(s)	275, 567, 739, 862, 998
SduI	GDGCHC	1 cut(s)	1306
SexAI	ACCWGGT	2 cut(s)	737, 996
SfaNI	GCATC	9 cut(s)	247, 328, 394, 707, 796, 951, 1074, 1366, 1377
SfcI	CTRYAG	2 cut(s)	82, 1475
SfuI	TTCGAA	1 cut(s)	873
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	9 cut(s)	23, 55, 208, 579, 648, 1110, 1135, 1497, 1507
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	4 cut(s)	117, 243, 521, 1130
StyD4I	CCNGG	5 cut(s)	273, 565, 737, 860, 996
TaiI	ACGT	1 cut(s)	1447
TaqI	TCGA	7 cut(s)	48, 743, 838, 873, 1177, 1411, 1439
TasI	AATT	9 cut(s)	23, 55, 208, 579, 648, 1110, 1135, 1497, 1507
TatI	WGTACW	4 cut(s)	348, 423, 666, 947
TfiI	GAWTC	1 cut(s)	1436
Tru1I	TTAA	6 cut(s)	33, 183, 474, 1319, 1392, 1481
Tru9I	TTAA	6 cut(s)	33, 183, 474, 1319, 1392, 1481
TscAI	CASTG	5 cut(s)	303, 397, 433, 815, 1242
TseFI	GTSAC	2 cut(s)	245, 392
TseI	GCWGC	3 cut(s)	1200, 1471, 1474
Tsp45I	GTSAC	2 cut(s)	245, 392
TspDTI	ATGAA	2 cut(s)	296, 1129
TspGWI	ACGGA	1 cut(s)	1289
TspRI	CASTG	5 cut(s)	303, 397, 433, 815, 1242
Tth111I	GACNNNGTC	1 cut(s)	739
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	4 cut(s)	23, 55, 208, 579
XceI	RCATGY	3 cut(s)	377, 387, 1120
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	4 cut(s)	117, 243, 521, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.