Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005838

Physical Location & Seq

Genomic Coordinates Forward (+)

13178588 .. 13183512

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGCCAGTTGATGTTGAAGACGAATTTTCGTTTAATCGTCTTTCTATAAAGGAAAATTCTCTTCACAGCCTCAGTAGCAACTATAGTGTATGCTCTCCAACCAGCGACAGTAGCACTAGCGTTCCTCATTCACCTCCTCCACCTACTGGACCTTACAAGAGAAGGAAAATAGCAAACTCCATTAATATTGGAGATGGAATTGATGTAAATTCTGATGAGTTTCAAGACGGCGAGACCTATGCTAGTGACTACGAAGATGCTGTTGAAGATACCCAGGACATGAAAGATGATATACCAGTGAATGTAAAGACCTATATGGACTGTCAAGAGGCTTTTGATGCTACTCAGTACAGGGAAGATGCTATACCTGTGCATGTTGAGACATGTAACAGTGACTGTGAAGATGCTGTTGAAGCTACTCAATACAGGGATGTCTTGATTTTGTTCAGGTTCAATGACCATGATCTCCCATTTAAACTCAGAGATATAATAATGTCTGATCTCCGGTTATTGACCTTGCTAGAGGCTGGGCTTCCTTCTTGGGCTATCTTCCTTCAGTCTTACCCAGGGTTTTGCAAAATTTATCGCCCGTGGATGTGTCCTCTTGCAAGAGCTTTATATGTGGTGATCTCAGTTGCCACTGTCCTAATTGGATTTTATGACCTGTACAAAAATGTTCCAGTTCTCAAGGCAACTGCATCTCGTATATGTGGGCCTCTATTTGATTGGATAGAGACCTGGTCGATGGTAACAAGGATCAAATACTTGGGAACAATGCTATTTCTGCATCACTCTCAGAAGGTTGTTCAGTGGTTCTTGACTATCAGGAGTACCACTCGATCCTTTTTTTCAGTTTTTGCCCGGCCGATGTTCGAACCTTTTGTAGAGTGCTTTAGCTTCCTTCTCCCAGTTTGGAATGTGTTTTTTGAGGTATTGGGGAGCATCTGTACATTGATTTTGTTTCTGATAGAGTCTTCTTGCAATATAGTGGAGAACCTGGTGGAGGTTTTACTGTTTCCAATATGGCTTTTCCTGTCGTCCATCTGGAGCATTGCCACTTCTGTCATATATCCTATATTTGGGATGCTGTGGGCAATACTCTATGCTCCAATTCACATGTTTCTTGCACTAGCCAATTTCATTGCCTTTCTTTTTACTTGTATATATGACACTCTTCGAGATACATGGAAGTTTATTAGCAGCATATTCCAGTTTGCTTCAGCCTCTCAGGCAACAGTGAGGACTGTTGAAGTTTCCATATGGCGTTCACTTTGGAATGACCTCTTTTCACAGCGGCAACAGCCTAACAAGCAAGAGAAGGTGTGTTTCTGCTTAGGCTCCTTGGCCAATATATGTTACTCTGAGAAAATTTTGCTTTCCAAGTTACTACCTTGGGTTTCAGATGCAAGTTTCAAGCTTTTTCAACTTGTAGTTACAACAATAGCAGGGAGACTTTCTGATCTGTTTGTGTCTTCTGTTTCACTTGCATTCTGCCGTCCATCCTTCAATATTGCAAGTAGTCTTTCCCCGGTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

512

Amino Acids

58.38

Weight (kDa)

4.97

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32970 AT2G32970 AT2G32970 AT2G32970
fragaria_vesca	FvH4_6g42290 FvH4_6g42290 FvH4_6g42290 FvH4_6g42290 FvH4_6g42290 FvH4_6g42290
malus_domestica	MD09G1113700.v1.1 MD17G1103800.v1.1
prunus_persica	Prupe.3G210900_v2.0.a1 Prupe.3G210900_v2.0.a1 Prupe.3G210900_v2.0.a1 Prupe.3G210900_v2.0.a1
pyrus_communis	pycom17g09790
rosa_chinensis	RchiOBHm_Chr2g0158131
rosa_laevigata	RLG00000021062
rosa_multiflora	Rmu_sc0005982.1_g000008 Rmu_sc0018610.1_g000001 Rmu_sc0032555.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091640
rosa_samantha	Rh2AG532300 Rh2BG546400 Rh2CG516200 Rh2DG554900
rosa_wichuraiana	Rw2G044010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1531
AccB1I	GGYRCC	1 cut(s)	1531
AccB7I	CCANNNNNTGG	1 cut(s)	146
AciI	CCGC	1 cut(s)	1294
AclWI	GGATC	2 cut(s)	764, 834
AcoI	YGGCCR	2 cut(s)	863, 1344
AcsI	RAATTY	5 cut(s)	23, 55, 208, 579, 1368
AcuI	CTGAAG	2 cut(s)	539, 1203
AfaI	GTAC	5 cut(s)	350, 668, 832, 949, 1533
AfiI	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
AflIII	ACRYGT	2 cut(s)	383, 1116
AgsI	TTSAA	9 cut(s)	17, 224, 266, 413, 454, 1250, 1414, 1424, 1507
AjnI	CCWGG	4 cut(s)	273, 565, 737, 996
AluBI	AGCT	4 cut(s)	416, 614, 897, 1417
AluI	AGCT	4 cut(s)	416, 614, 897, 1417
Alw26I	GTCTC	4 cut(s)	227, 374, 728, 1444
AlwI	GGATC	2 cut(s)	764, 834
AlwNI	CAGNNNCTG	1 cut(s)	396
AoxI	GGCC	3 cut(s)	713, 863, 1344
ApeKI	GCWGC	1 cut(s)	1200
ApoI	RAATTY	5 cut(s)	23, 55, 208, 579, 1368
AseI	ATTAAT	1 cut(s)	183
Asp718I	GGTACC	1 cut(s)	1531
AspS9I	GGNCC	2 cut(s)	149, 713
AsuC2I	CCSGG	2 cut(s)	862, 1529
AsuHPI	GGTGA	2 cut(s)	123, 637
AsuII	TTCGAA	1 cut(s)	873
AvaII	GGWCC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	1346
BanI	GGYRCC	1 cut(s)	1531
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbsI	GAAGAC	3 cut(s)	24, 966, 1464
BbvI	GCAGC	1 cut(s)	1212
BccI	CCATC	4 cut(s)	188, 739, 1049, 1507
BceAI	ACGGC	2 cut(s)	244, 1479
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	4 cut(s)	275, 567, 739, 998
BcnI	CCSGG	2 cut(s)	862, 1529
BcoDI	GTCTC	4 cut(s)	227, 374, 728, 1444
BfaI	CTAG	4 cut(s)	117, 243, 521, 1130
BfmI	CTRYAG	1 cut(s)	82
BglI	GCCNNNNNGGC	1 cut(s)	1229
BisI	GCNGC	2 cut(s)	1201, 1295
BlsI	GCNGC	2 cut(s)	1202, 1296
Bme1390I	CCNGG	6 cut(s)	275, 567, 739, 862, 998, 1529
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 713
BmiI	GGNNCC	2 cut(s)	1339, 1533
BmrFI	CCNGG	6 cut(s)	275, 567, 739, 862, 998, 1529
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	9 cut(s)	247, 328, 349, 394, 707, 796, 951, 1074, 1393
BmuI	ACTGGG	1 cut(s)	902
BpiI	GAAGAC	3 cut(s)	24, 966, 1464
BplI	GAGNNNNNCTC	2 cut(s)	820, 852
BpmI	CTGGAG	1 cut(s)	1066
Bpu10I	CCTNAGC	1 cut(s)	1333
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	2 cut(s)	862, 1529
BsaI	GGTCTC	2 cut(s)	227, 728
BsaJI	CCNNGG	7 cut(s)	273, 565, 566, 590, 1341, 1391, 1527
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
Bse1I	ACTGG	6 cut(s)	5, 151, 296, 680, 908, 1210
Bse3DI	GCAATG	2 cut(s)	1050, 1140
BseBI	CCWGG	4 cut(s)	275, 567, 739, 998
BseDI	CCNNGG	7 cut(s)	273, 565, 566, 590, 1341, 1391, 1527
BseGI	GGATG	4 cut(s)	436, 600, 1089, 1499
BseLI	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
BseMI	GCAATG	2 cut(s)	1050, 1140
BseMII	CTCAG	7 cut(s)	85, 359, 493, 645, 809, 1241, 1353
BseNI	ACTGG	6 cut(s)	5, 151, 296, 680, 908, 1210
BseRI	GAGGAG	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	863
BseXI	GCAGC	1 cut(s)	1212
BseYI	CCCAGC	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	866
BshFI	GGCC	3 cut(s)	715, 865, 1346
BshNI	GGYRCC	1 cut(s)	1531
BsiEI	CGRYCG	1 cut(s)	866
BsiSI	CCGG	3 cut(s)	505, 862, 1529
BslI	CCNNNNNNNGG	3 cut(s)	146, 1003, 1079
BsmAI	GTCTC	4 cut(s)	227, 374, 728, 1444
BsmI	GAATGC	1 cut(s)	1487
BsnI	GGCC	3 cut(s)	715, 865, 1346
Bso31I	GGTCTC	2 cut(s)	227, 728
Bsp119I	TTCGAA	1 cut(s)	873
Bsp1407I	TGTACA	2 cut(s)	666, 947
Bsp143I	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
BspACI	CCGC	1 cut(s)	1294
BspANI	GGCC	3 cut(s)	715, 865, 1346
BspCNI	CTCAG	7 cut(s)	84, 358, 492, 644, 808, 1240, 1354
BspLI	GGNNCC	2 cut(s)	1339, 1533
BspPI	GGATC	2 cut(s)	764, 834
BspT104I	TTCGAA	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	1531
BspTNI	GGTCTC	2 cut(s)	227, 728
BsrDI	GCAATG	2 cut(s)	1050, 1140
BsrGI	TGTACA	2 cut(s)	666, 947
BsrI	ACTGG	6 cut(s)	5, 151, 296, 680, 908, 1210
BssECI	CCNNGG	7 cut(s)	273, 565, 566, 590, 1341, 1391, 1527
BssMI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
BssT1I	CCWWGG	2 cut(s)	1341, 1391
Bst2UI	CCWGG	4 cut(s)	275, 567, 739, 998
Bst4CI	ACNGT	8 cut(s)	110, 323, 392, 398, 643, 1014, 1237, 1246
Bst6I	CTCTTC	2 cut(s)	66, 1179
BstAUI	TGTACA	2 cut(s)	666, 947
BstBI	TTCGAA	1 cut(s)	873
BstDEI	CTNAG	8 cut(s)	71, 345, 479, 631, 795, 1227, 1333, 1362
BstDSI	CCRYGG	1 cut(s)	590
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	4 cut(s)	436, 600, 1089, 1499
BstKTI	GATC	6 cut(s)	466, 502, 630, 759, 842, 1462
BstMAI	GTCTC	4 cut(s)	227, 374, 728, 1444
BstMBI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
BstMCI	CGRYCG	1 cut(s)	866
BstMWI	GCNNNNNNNGC	8 cut(s)	75, 111, 338, 413, 784, 1229, 1300, 1309
BstNI	CCWGG	4 cut(s)	275, 567, 739, 998
BstNSI	RCATGY	3 cut(s)	377, 387, 1120
BstSCI	CCNGG	6 cut(s)	273, 565, 737, 860, 996, 1527
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	1212
BstV2I	GAAGAC	3 cut(s)	24, 966, 1464
BstZI	CGGCCG	1 cut(s)	863
BsuRI	GGCC	3 cut(s)	715, 865, 1346
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	4 cut(s)	436, 600, 1089, 1499
BtsIMutI	CAGTG	5 cut(s)	303, 397, 639, 815, 1242
CaiI	CAGNNNCTG	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	149, 713
CsiI	ACCWGGT	2 cut(s)	737, 996
Csp6I	GTAC	5 cut(s)	349, 667, 831, 948, 1532
CviAII	CATG	6 cut(s)	280, 374, 384, 461, 1117, 1185
CviQI	GTAC	5 cut(s)	349, 667, 831, 948, 1532
DdeI	CTNAG	8 cut(s)	71, 345, 479, 631, 795, 1227, 1333, 1362
DpnI	GATC	6 cut(s)	465, 501, 629, 758, 841, 1461
DpnII	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	2 cut(s)	863, 1344
EagI	CGGCCG	1 cut(s)	863
Eam1104I	CTCTTC	2 cut(s)	66, 1179
EarI	CTCTTC	2 cut(s)	66, 1179
EclXI	CGGCCG	1 cut(s)	863
Eco130I	CCWWGG	2 cut(s)	1341, 1391
Eco31I	GGTCTC	2 cut(s)	227, 728
Eco47I	GGWCC	1 cut(s)	149
Eco52I	CGGCCG	1 cut(s)	863
Eco57I	CTGAAG	2 cut(s)	539, 1203
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoRII	CCWGG	4 cut(s)	273, 565, 737, 996
EcoT14I	CCWWGG	2 cut(s)	1341, 1391
ErhI	CCWWGG	2 cut(s)	1341, 1391
FaeI	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
FatI	CATG	6 cut(s)	279, 373, 383, 460, 1116, 1184
FauNDI	CATATG	1 cut(s)	1259
Fnu4HI	GCNGC	2 cut(s)	1201, 1295
FokI	GGATG	4 cut(s)	443, 607, 1096, 1486
Fsp4HI	GCNGC	2 cut(s)	1201, 1295
FspBI	CTAG	4 cut(s)	117, 243, 521, 1130
GluI	GCNGC	2 cut(s)	1201, 1295
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	1066
HaeIII	GGCC	3 cut(s)	715, 865, 1346
HapII	CCGG	3 cut(s)	505, 862, 1529
Hin1II	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
HindIII	AAGCTT	1 cut(s)	1415
HinfI	GANTC	1 cut(s)	971
HpaII	CCGG	3 cut(s)	505, 862, 1529
HphI	GGTGA	2 cut(s)	123, 637
Hpy166II	GTNNAC	1 cut(s)	1268
Hpy188I	TCNGA	8 cut(s)	214, 482, 499, 798, 966, 1363, 1402, 1459
Hpy188III	TCNNGA	7 cut(s)	224, 326, 436, 817, 826, 1045, 1178
Hpy8I	GTNNAC	1 cut(s)	1268
HpyAV	CCTTC	7 cut(s)	156, 546, 563, 793, 911, 1312, 1513
HpyCH4III	ACNGT	8 cut(s)	110, 323, 392, 398, 643, 1014, 1237, 1246
HpyF10VI	GCNNNNNNNGC	8 cut(s)	75, 111, 338, 413, 784, 1229, 1300, 1309
HpyF3I	CTNAG	8 cut(s)	71, 345, 479, 631, 795, 1227, 1333, 1362
Hsp92II	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
KpnI	GGTACC	1 cut(s)	1535
Kzo9I	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
LmnI	GCTCC	4 cut(s)	939, 1047, 1111, 1343
Lsp1109I	GCAGC	1 cut(s)	1212
LweI	GCATC	9 cut(s)	247, 328, 349, 394, 707, 796, 951, 1074, 1393
MabI	ACCWGGT	2 cut(s)	737, 996
MaeI	CTAG	4 cut(s)	117, 243, 521, 1130
MaeIII	GTNAC	7 cut(s)	245, 386, 392, 748, 1355, 1383, 1432
MalI	GATC	6 cut(s)	465, 501, 629, 758, 841, 1461
MboI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
MlsI	TGGCCA	1 cut(s)	1346
MluCI	AATT	9 cut(s)	23, 55, 198, 208, 579, 648, 1110, 1135, 1368
MluNI	TGGCCA	1 cut(s)	1346
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	1 cut(s)	122
Mox20I	TGGCCA	1 cut(s)	1346
MscI	TGGCCA	1 cut(s)	1346
MseI	TTAA	3 cut(s)	33, 183, 474
Msp20I	TGGCCA	1 cut(s)	1346
MspA1I	CMGCKG	1 cut(s)	1294
MspI	CCGG	3 cut(s)	505, 862, 1529
MspR9I	CCNGG	6 cut(s)	275, 567, 739, 862, 998, 1529
Mva1269I	GAATGC	1 cut(s)	1487
MvaI	CCWGG	4 cut(s)	275, 567, 739, 998
MwoI	GCNNNNNNNGC	8 cut(s)	75, 111, 338, 413, 784, 1229, 1300, 1309
NciI	CCSGG	2 cut(s)	862, 1529
NdeI	CATATG	1 cut(s)	1259
NdeII	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
NlaIII	CATG	6 cut(s)	283, 377, 387, 464, 1120, 1188
NlaIV	GGNNCC	2 cut(s)	1339, 1533
NmuCI	GTSAC	2 cut(s)	245, 392
NspI	RCATGY	3 cut(s)	377, 387, 1120
NspV	TTCGAA	1 cut(s)	873
PasI	CCCWGGG	1 cut(s)	566
PciI	ACATGT	2 cut(s)	383, 1116
PctI	GAATGC	1 cut(s)	1487
PflFI	GACNNNGTC	1 cut(s)	739
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	1202, 1296
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
PscI	ACATGT	2 cut(s)	383, 1116
PshBI	ATTAAT	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	273, 565, 737, 996
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	273, 565, 737, 996
PspN4I	GGNNCC	2 cut(s)	1339, 1533
PspPI	GGNCC	2 cut(s)	149, 713
PstNI	CAGNNNCTG	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	739
RsaI	GTAC	5 cut(s)	350, 668, 832, 949, 1533
RsaNI	GTAC	5 cut(s)	349, 667, 831, 948, 1532
SaqAI	TTAA	3 cut(s)	33, 183, 474
SatI	GCNGC	2 cut(s)	1201, 1295
Sau3AI	GATC	6 cut(s)	463, 499, 627, 756, 839, 1459
Sau96I	GGNCC	2 cut(s)	149, 713
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	6 cut(s)	275, 567, 739, 862, 998, 1529
SexAI	ACCWGGT	2 cut(s)	737, 996
SfaNI	GCATC	9 cut(s)	247, 328, 349, 394, 707, 796, 951, 1074, 1393
SfcI	CTRYAG	1 cut(s)	82
SfuI	TTCGAA	1 cut(s)	873
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	9 cut(s)	23, 55, 198, 208, 579, 648, 1110, 1135, 1368
SsiI	CCGC	1 cut(s)	1294
SspI	AATATT	2 cut(s)	187, 1510
SspMI	CTAG	4 cut(s)	117, 243, 521, 1130
StyD4I	CCNGG	6 cut(s)	273, 565, 737, 860, 996, 1527
StyI	CCWWGG	2 cut(s)	1341, 1391
TaaI	ACNGT	8 cut(s)	110, 323, 392, 398, 643, 1014, 1237, 1246
TaqI	TCGA	4 cut(s)	743, 838, 873, 1177
TasI	AATT	9 cut(s)	23, 55, 198, 208, 579, 648, 1110, 1135, 1368
TatI	WGTACW	3 cut(s)	348, 666, 947
TauI	GCSGC	1 cut(s)	1297
Tru1I	TTAA	3 cut(s)	33, 183, 474
Tru9I	TTAA	3 cut(s)	33, 183, 474
TscAI	CASTG	5 cut(s)	303, 397, 646, 815, 1242
TseFI	GTSAC	2 cut(s)	245, 392
TseI	GCWGC	1 cut(s)	1200
Tsp45I	GTSAC	2 cut(s)	245, 392
TspDTI	ATGAA	2 cut(s)	296, 1129
TspRI	CASTG	5 cut(s)	303, 397, 646, 815, 1242
Tth111I	GACNNNGTC	1 cut(s)	739
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	5 cut(s)	23, 55, 208, 579, 1368
XceI	RCATGY	3 cut(s)	377, 387, 1120
XspI	CTAG	4 cut(s)	117, 243, 521, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.