Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006173.1

Orthogroup ID

OG0015166

Physical Location & Seq

Genomic Coordinates Forward (+)

149292 .. 153237

Gene Structure 3946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgctcaatcaaggaattatctggaaatctggaatgaaccaaaactattttagaccaacagatgccgtcagtttagcagtgacattgaccaggttcaacgcacataagacagggaagcctacattgccgcagccctgctcccagcccacgctgcccttgcaacgcactttccagcgtaccgtgtcgcagctctacccccgcgctgtccctacagcctcctgcgcactagtatgcctgctgccaccgcagcccccgtgtgacatctgcagctctgcagcctacccctcgtgccattcgtccgccagccagccagccttcctcacgcactcgctgcctcgctgctgccccgcaccacacacactctactgccctgctgttgccccttgttgctactgctccctaacacgcctgcatcaacatgcgcgtgaattcagccccgccaccgttgccaacctcggccccggctttgacttcctcggatgctccgttgacggcctcggcgacttcgtctccctcaccgttgatccccaagtcctccacggagagatatccatttccgagatctctggcgaccacaactccaagctgagcaagaaccccatctggaactgcgccgggatcgccgccattgaggtcatgaagatgctaggcgtccgctccgtcggcctctccccctctctccagaaaggcctgcctttgggaagcgggctcagatccagtgcggccagcgccgtggcagccgccgtagctgtcaacgagattttcggcgggaagctgggggttgaagcactggtacacgcggggctcaaatcggaggagaaggtctccggttatcacgccgatctcatctttacagccttgacccaacgaccgagaattcttctcagtccgactccgacagctcacctcgtcgacctcatcattctccaagccgcctccgacctgaccccgtgttcccctacctcgctccctgaccccaagtccccgatctcgttctccagacctctagacctcgagcttcatctgcactcccagtccgatcgattgatctgtttgcctctttctctcgccagtcgcactgaacccagtccaaatcgctctctctccgctcgaatcaacaaatttctcgcactctcctcgcacagaaattcaaaaccaaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004413 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006555 GO:0006566 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009086 GO:0009088 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019202 GO:0019752 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01230 map00260 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

41.4

Weight (kDa)

8.94

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	211 - 285	1.3e-10	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17265
fragaria_vesca	FvH4_2g16830
malus_domestica	MD10G1142000.v1.1
prunus_persica	Prupe.8G180500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280961
rosa_laevigata	RLG00000013012
rosa_multiflora	Rmu_sc0006173.1_g000036 Rmu_sc0020792.1_g000001 Rmu_sc0030424.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187450
rosa_rugosa	Rorug06G0137600
rosa_samantha	Rh6AG249600 Rh6BG251800 Rh6CG252300 Rh6DG244000
rosa_wichuraiana	Rw6G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	223
AccBSI	CCGCTC	2 cut(s)	657, 1109
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	3 cut(s)	201, 424, 800
AclWI	GGATC	3 cut(s)	518, 626, 708
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	4 cut(s)	428, 876, 1121, 1147
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	2 cut(s)	178, 795
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	3 cut(s)	97, 785, 1152
AhdI	GACNNNNNGTC	1 cut(s)	979
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	7 cut(s)	190, 270, 586, 749, 775, 902, 1018
AluI	AGCT	7 cut(s)	190, 270, 586, 749, 775, 902, 1018
Alw26I	GTCTC	2 cut(s)	514, 829
AlwI	GGATC	3 cut(s)	518, 626, 708
Ama87I	CYCGRG	1 cut(s)	1013
AoxI	GGCC	5 cut(s)	457, 493, 664, 688, 723
ApoI	RAATTY	4 cut(s)	428, 876, 1121, 1147
AspLEI	GCGC	5 cut(s)	203, 224, 424, 614, 731
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	462, 616
AsuHPI	GGTGA	2 cut(s)	508, 896
AvaI	CYCGRG	1 cut(s)	1013
BanII	GRGCYC	2 cut(s)	711, 807
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BauI	CACGAG	1 cut(s)	286
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	4 cut(s)	50, 508, 716, 728
BcgI	CGANNNNNNTGC	2 cut(s)	1119, 1153
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	462, 616
BcoDI	GTCTC	2 cut(s)	514, 829
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	3 cut(s)	227, 647, 1007
BfmI	CTRYAG	3 cut(s)	210, 265, 273
BfoI	RGCGCY	1 cut(s)	732
BglII	AGATCT	1 cut(s)	561
BlpI	GCTNAGC	1 cut(s)	587
Bme1390I	CCNGG	3 cut(s)	91, 462, 616
BmeRI	GACNNNNNGTC	1 cut(s)	979
BmeT110I	CYCGRG	1 cut(s)	1013
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	3 cut(s)	91, 462, 616
BmrI	ACTGGG	2 cut(s)	1027, 1080
BmsI	GCATC	4 cut(s)	52, 421, 470, 633
BmuI	ACTGGG	2 cut(s)	1027, 1080
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	2 cut(s)	665, 982
Bpu1102I	GCTNAGC	1 cut(s)	587
BpuMI	CCSGG	2 cut(s)	462, 616
Bsa29I	ATCGAT	1 cut(s)	1042
BsaHI	GRCGYC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	6 cut(s)	454, 460, 475, 496, 538, 732
BsaWI	WCCGGW	1 cut(s)	827
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 524, 563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	5 cut(s)	717, 795, 1033, 1071, 1086
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	6 cut(s)	454, 460, 475, 496, 538, 732
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	578, 724, 898
BseNI	ACTGG	5 cut(s)	717, 795, 1033, 1071, 1086
BseRI	GAGGAG	2 cut(s)	830, 1126
BseYI	CCCAGC	2 cut(s)	141, 775
BsgI	GTGCAG	1 cut(s)	1010
Bsh1236I	CGCG	3 cut(s)	201, 424, 800
Bsh1285I	CGRYCG	2 cut(s)	872, 1042
BshFI	GGCC	5 cut(s)	459, 495, 666, 690, 725
BshVI	ATCGAT	1 cut(s)	1042
BsiEI	CGRYCG	2 cut(s)	872, 1042
BsiHKCI	CYCGRG	1 cut(s)	1013
BsiSI	CCGG	3 cut(s)	462, 615, 828
BslFI	GGGAC	2 cut(s)	191, 967
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	514, 829
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	191, 967
BsnI	GGCC	5 cut(s)	459, 495, 666, 690, 725
Bso31I	GGTCTC	1 cut(s)	829
BsoBI	CYCGRG	1 cut(s)	1013
Bsp1286I	GDGCHC	2 cut(s)	711, 807
Bsp143I	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
Bsp1720I	GCTNAGC	1 cut(s)	587
BspANI	GGCC	5 cut(s)	459, 495, 666, 690, 725
BspCNI	CTCAG	3 cut(s)	579, 723, 897
BspDI	ATCGAT	1 cut(s)	1042
BspFNI	CGCG	3 cut(s)	201, 424, 800
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	2 cut(s)	269, 277
BspPI	GGATC	3 cut(s)	518, 626, 708
BspTNI	GGTCTC	1 cut(s)	829
BsrBI	CCGCTC	2 cut(s)	657, 1109
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	5 cut(s)	717, 795, 1033, 1071, 1086
BssECI	CCNNGG	6 cut(s)	454, 460, 475, 496, 538, 732
BssMI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
BssNI	GRCGYC	1 cut(s)	651
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	3 cut(s)	181, 445, 520
BstACI	GRCGYC	1 cut(s)	651
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	8 cut(s)	236, 304, 308, 312, 410, 692, 707, 727
BstDEI	CTNAG	3 cut(s)	587, 710, 884
BstDSI	CCRYGG	2 cut(s)	538, 732
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	3 cut(s)	201, 424, 800
BstH2I	RGCGCY	1 cut(s)	732
BstHHI	GCGC	5 cut(s)	203, 224, 424, 614, 731
BstKTI	GATC	8 cut(s)	526, 564, 621, 716, 844, 990, 1042, 1050
BstMAI	GTCTC	2 cut(s)	514, 829
BstMBI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
BstMCI	CGRYCG	2 cut(s)	872, 1042
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	89, 460, 614
BstSFI	CTRYAG	3 cut(s)	210, 265, 273
BstUI	CGCG	3 cut(s)	201, 424, 800
BstX2I	RGATCY	2 cut(s)	561, 713
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	2 cut(s)	561, 713
Bsu15I	ATCGAT	1 cut(s)	1042
BsuRI	GGCC	5 cut(s)	459, 495, 666, 690, 725
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	2 cut(s)	538, 732
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	4 cut(s)	84, 724, 788, 1077
Cac8I	GCNNGC	8 cut(s)	236, 304, 308, 312, 410, 692, 707, 727
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	5 cut(s)	203, 224, 424, 614, 731
Cfr13I	GGNCC	1 cut(s)	458
ClaI	ATCGAT	1 cut(s)	1042
CseI	GACGC	1 cut(s)	640
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	177, 794
CviAII	CATG	2 cut(s)	419, 637
CviQI	GTAC	2 cut(s)	177, 794
DdeI	CTNAG	3 cut(s)	587, 710, 884
DpnI	GATC	8 cut(s)	525, 563, 620, 715, 843, 989, 1041, 1049
DpnII	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
DriI	GACNNNNNGTC	1 cut(s)	979
EaeI	YGGCCR	1 cut(s)	723
Eam1105I	GACNNNNNGTC	1 cut(s)	979
EciI	GGCGGA	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	711, 807
Eco31I	GGTCTC	1 cut(s)	829
Eco32I	GATATC	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	1013
EcoRI	GAATTC	2 cut(s)	428, 876
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	711, 807
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	2 cut(s)	422, 640
FaiI	YATR	4 cut(s)	105, 232, 420, 638
FaqI	GGGAC	2 cut(s)	191, 967
FatI	CATG	2 cut(s)	418, 636
FauI	CCCGC	6 cut(s)	206, 355, 445, 698, 761, 793
FblI	GTMKAC	1 cut(s)	912
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	2 cut(s)	711, 807
FspBI	CTAG	3 cut(s)	227, 647, 1007
FspI	TGCGCA	1 cut(s)	223
GlaI	GCGC	5 cut(s)	202, 223, 423, 613, 730
GsaI	CCCAGC	2 cut(s)	145, 779
GsuI	CTGGAG	2 cut(s)	665, 982
HaeII	RGCGCY	1 cut(s)	732
HaeIII	GGCC	5 cut(s)	459, 495, 666, 690, 725
HapII	CCGG	3 cut(s)	462, 615, 828
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	5 cut(s)	203, 224, 424, 614, 731
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	2 cut(s)	422, 640
Hin6I	GCGC	5 cut(s)	201, 222, 422, 612, 729
HinP1I	GCGC	5 cut(s)	201, 222, 422, 612, 729
HincII	GTYRAC	3 cut(s)	490, 754, 913
HindII	GTYRAC	3 cut(s)	490, 754, 913
HinfI	GANTC	2 cut(s)	892, 1113
HpaII	CCGG	3 cut(s)	462, 615, 828
HphI	GGTGA	2 cut(s)	508, 896
Hpy166II	GTNNAC	4 cut(s)	490, 754, 796, 913
Hpy188I	TCNGA	8 cut(s)	479, 559, 713, 814, 891, 897, 940, 1039
Hpy188III	TCNNGA	7 cut(s)	22, 30, 604, 637, 682, 999, 1007
Hpy8I	GTNNAC	4 cut(s)	490, 754, 796, 913
Hpy99I	CGWCG	2 cut(s)	665, 914
HpyAV	CCTTC	2 cut(s)	325, 814
HpyCH4III	ACNGT	3 cut(s)	181, 445, 520
HpyCH4V	TGCA	5 cut(s)	160, 267, 275, 412, 1027
HpyF3I	CTNAG	3 cut(s)	587, 710, 884
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	2 cut(s)	422, 640
HspAI	GCGC	5 cut(s)	201, 222, 422, 612, 729
Kzo9I	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
LmnI	GCTCC	5 cut(s)	143, 401, 488, 662, 972
LweI	GCATC	4 cut(s)	52, 421, 470, 633
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	3 cut(s)	227, 647, 1007
MaeIII	GTNAC	2 cut(s)	79, 257
MalI	GATC	8 cut(s)	525, 563, 620, 715, 843, 989, 1041, 1049
MbiI	CCGCTC	2 cut(s)	657, 1109
MboI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
MboII	GAAGA	2 cut(s)	652, 872
MflI	RGATCY	2 cut(s)	561, 713
MhlI	GDGCHC	2 cut(s)	711, 807
MluCI	AATT	5 cut(s)	15, 428, 876, 1121, 1147
MlyI	GAGTC	1 cut(s)	886
MmeI	TCCRAC	3 cut(s)	914, 920, 963
MslI	CAYNNNNRTG	4 cut(s)	229, 417, 423, 641
MspI	CCGG	3 cut(s)	462, 615, 828
MspR9I	CCNGG	3 cut(s)	91, 462, 616
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	3 cut(s)	201, 424, 800
NciI	CCSGG	2 cut(s)	462, 616
NdeII	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
NlaIII	CATG	2 cut(s)	422, 640
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	2 cut(s)	435, 477
NmuCI	GTSAC	2 cut(s)	79, 257
NsbI	TGCGCA	1 cut(s)	223
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	1013
PagI	TCATGA	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	4 cut(s)	293, 483, 498, 504
PfeI	GAWTC	1 cut(s)	1113
PflFI	GACNNNGTC	1 cut(s)	506
Ple19I	CGATCG	1 cut(s)	1042
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	2 cut(s)	141, 775
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	1 cut(s)	458
PspXI	VCTCGAGB	1 cut(s)	1013
PstI	CTGCAG	2 cut(s)	269, 277
PsuI	RGATCY	2 cut(s)	561, 713
PsyI	GACNNNGTC	1 cut(s)	506
PvuI	CGATCG	1 cut(s)	1042
RsaI	GTAC	2 cut(s)	178, 795
RsaNI	GTAC	2 cut(s)	177, 794
RseI	CAYNNNNRTG	4 cut(s)	229, 417, 423, 641
SalI	GTCGAC	1 cut(s)	911
Sau3AI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	886
ScrFI	CCNGG	3 cut(s)	91, 462, 616
SduI	GDGCHC	2 cut(s)	711, 807
SexAI	ACCWGGT	1 cut(s)	89
SfaNI	GCATC	4 cut(s)	52, 421, 470, 633
SfcI	CTRYAG	3 cut(s)	210, 265, 273
Sfr274I	CTCGAG	1 cut(s)	1013
SlaI	CTCGAG	1 cut(s)	1013
SmiMI	CAYNNNNRTG	4 cut(s)	229, 417, 423, 641
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	5 cut(s)	15, 428, 876, 1121, 1147
SseBI	AGGCCT	1 cut(s)	690
SspMI	CTAG	3 cut(s)	227, 647, 1007
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	89, 460, 614
TaaI	ACNGT	3 cut(s)	181, 445, 520
TaqI	TCGA	4 cut(s)	912, 1014, 1042, 1111
TaqII	GACCGA	1 cut(s)	886
TasI	AATT	5 cut(s)	15, 428, 876, 1121, 1147
TauI	GCSGC	5 cut(s)	130, 626, 725, 743, 935
TfiI	GAWTC	1 cut(s)	1113
TscAI	CASTG	4 cut(s)	84, 724, 795, 1084
TseFI	GTSAC	2 cut(s)	79, 257
Tsp45I	GTSAC	2 cut(s)	79, 257
TspDTI	ATGAA	3 cut(s)	50, 653, 1010
TspGWI	ACGGA	3 cut(s)	475, 555, 649
TspRI	CASTG	4 cut(s)	84, 724, 795, 1084
Tth111I	GACNNNGTC	1 cut(s)	506
XapI	RAATTY	4 cut(s)	428, 876, 1121, 1147
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	3 cut(s)	227, 647, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.