Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006267.1

Orthogroup ID

OG0020072

Physical Location & Seq

Genomic Coordinates Reverse (-)

20333 .. 21770

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006267.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgcatttttcactttggaatggtcctgcactttggaatggtgcatttttcactcatcagctcagagagccttcatcttcaaataggcccaaaagagagtcctcagctgcattaccagagtcgaatgtcaagagatcccgagttgcgtcagctgcatcatcatcggctcccatctccagagctaatggtaaggggaaagacagagccaatgaaggcctcaaaccttgccttccggggttcaagaggtcttctttgtcagatcctgatgtacctactgctcagaatgtcagcaacatggcatctaacccaatcaacataccaaatgtggagcaacctgtcattaatgaggctttcaaaactccgtttgggtttgcaaaaagtagcacttttactatggagctttttaagaagatgggatacaaagaagggagtggcttgggaaaagatggccaaggcattaaggagcctattcgagttggcatatggacaaaaaagcagggagtgggcttccaaacagctcagacatcagagcagaatgctggggatcagaatgtgaagcagaaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000390 GO:0000393 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032984 GO:0032988 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071008 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

189

Amino Acids

20.45

Weight (kDa)

9.95

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020072)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006267.1_g000005
rosa_roxburghii	Rroxscaffold_4G00279320
rosa_samantha	Rh1AG446000 Rh1BG401300 Rh1CG415700 Rh1DG431500
rosa_wichuraiana	Rw1G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	129, 254, 552
AcoI	YGGCCR	1 cut(s)	448
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	81, 241, 355
AluBI	AGCT	6 cut(s)	61, 107, 152, 182, 400, 518
AluI	AGCT	6 cut(s)	61, 107, 152, 182, 400, 518
AlwI	GGATC	3 cut(s)	129, 254, 552
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	86, 214, 448
ApeKI	GCWGC	2 cut(s)	107, 152
AseI	ATTAAT	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	23, 87
AsuC2I	CCSGG	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	401, 433
BbsI	GAAGAC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	94, 139
BccI	CCATC	3 cut(s)	179, 406, 440
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciVI	GTATCC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	108, 153
BlsI	GCNGC	2 cut(s)	109, 154
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	23, 87
BmiI	GGNNCC	2 cut(s)	168, 465
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	164, 308
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	233, 451
Bse1I	ACTGG	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	233, 451
BseMII	CTCAG	4 cut(s)	76, 117, 293, 533
BseNI	ACTGG	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	94, 139
BseYI	CCCAGC	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	88, 216, 450
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	3 cut(s)	88, 216, 450
BsoBI	CYCGRG	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	134, 259, 544
BspANI	GGCC	3 cut(s)	88, 216, 450
BspCNI	CTCAG	4 cut(s)	75, 116, 292, 532
BspLI	GGNNCC	2 cut(s)	168, 465
BspPI	GGATC	3 cut(s)	129, 254, 552
BsrI	ACTGG	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	233, 451
BssMI	GATC	3 cut(s)	134, 259, 544
BssT1I	CCWWGG	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	62, 103, 279, 519
BstKTI	GATC	3 cut(s)	137, 262, 547
BstMBI	GATC	3 cut(s)	134, 259, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 152
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	94, 139
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	134, 259
BstYI	RGATCY	2 cut(s)	134, 259
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	88, 216, 450
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	23, 87
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	295
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	4 cut(s)	62, 103, 279, 519
DpnI	GATC	3 cut(s)	136, 261, 546
DpnII	GATC	3 cut(s)	134, 259, 544
EaeI	YGGCCR	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	451
Eco147I	AGGCCT	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	298
FaiI	YATR	5 cut(s)	296, 317, 395, 482, 484
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FatI	CATG	1 cut(s)	294
FauNDI	CATATG	1 cut(s)	482
Fnu4HI	GCNGC	2 cut(s)	108, 153
Fsp4HI	GCNGC	2 cut(s)	108, 153
GluI	GCNGC	2 cut(s)	108, 153
GsaI	CCCAGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	88, 216, 450
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	2 cut(s)	98, 119
HpaII	CCGG	1 cut(s)	233
Hpy188I	TCNGA	6 cut(s)	65, 259, 282, 522, 529, 549
Hpy188III	TCNNGA	5 cut(s)	130, 138, 177, 241, 263
HpyAV	CCTTC	4 cut(s)	81, 206, 239, 419
HpyCH4V	TGCA	6 cut(s)	4, 29, 44, 110, 155, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 152
HpyF3I	CTNAG	4 cut(s)	62, 103, 279, 519
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	134, 259, 544
LmnI	GCTCC	4 cut(s)	172, 328, 397, 463
LpnPI	CCDG	8 cut(s)	39, 129, 190, 246, 276, 348, 482, 525
Lsp1109I	GCAGC	2 cut(s)	94, 139
LweI	GCATC	2 cut(s)	164, 308
MalI	GATC	3 cut(s)	136, 261, 546
MboI	GATC	3 cut(s)	134, 259, 544
MboII	GAAGA	3 cut(s)	69, 240, 421
MflI	RGATCY	2 cut(s)	134, 259
MlsI	TGGCCA	1 cut(s)	450
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	107, 128
MnlI	CCTC	4 cut(s)	112, 227, 237, 340
Mox20I	TGGCCA	1 cut(s)	450
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	3 cut(s)	342, 405, 459
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	2 cut(s)	107, 152
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	67, 152
NciI	CCSGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	482
NdeII	GATC	3 cut(s)	134, 259, 544
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	168, 465
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	216
PctI	GAATGC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	109, 154
PleI	GAGTC	2 cut(s)	106, 127
PpsI	GAGTC	2 cut(s)	106, 127
PshBI	ATTAAT	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	539
PspN4I	GGNNCC	2 cut(s)	168, 465
PspPI	GGNCC	2 cut(s)	23, 87
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	134, 259
PvuII	CAGCTG	2 cut(s)	107, 152
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	342, 405, 459
SatI	GCNGC	2 cut(s)	108, 153
Sau3AI	GATC	3 cut(s)	134, 259, 544
Sau96I	GGNCC	2 cut(s)	23, 87
SchI	GAGTC	2 cut(s)	107, 128
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	164, 308
SinI	GGWCC	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	451
TaqI	TCGA	2 cut(s)	122, 472
Tru1I	TTAA	3 cut(s)	342, 405, 459
Tru9I	TTAA	3 cut(s)	342, 405, 459
TseI	GCWGC	2 cut(s)	107, 152
TspDTI	ATGAA	2 cut(s)	63, 225
TspGWI	ACGGA	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.