Rh1BG401300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0020072
Physical Location & Seq
Reverse (-)
52511426 .. 52513131
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG401300.1

Sequence Viewer

Length: 597 bp
ATGGGTTTCGATTGTTGGGAACCGTTTAGGGAGCAGCATGGCCCTGCACTTTGGAATGGTGCATTTTTCACTCATCAGCTCAGAGAGCCTTCATCTTCAAAGAGGCCCAAAAGAGAGTCCTCAGCTGCATTACCAGAGTCGAATGTCAAGAGACCCCGAGTTGTGTCAGCTGCATCATCATCGGCTCCCATCTCCAGCCAAACCACATTCGGCTCACCTAACAGTGCTTGCTTTGTTTCCAGAGCTAATGGTAAGGGGAAAGAGAGAGCCAATGAAGGCCTCAAACCTTGCCTTCCGGGGTTCAAGAGGTCTTCTTTGTCAGATCCTGATGTACCTACTGCTCAGAATGTCAGCAACATGGCATCTAACCCAATCAACATACCAAACGTGGAGCAACCTGTCACTAATGAGGCTTTAGAAACTTCGTTTGGGTTTGCAAAAAGTAGCACTTTTACTGTGGAGCTTTTTAAGAAGATGGGATACGAAGAAGGGAGTGGTTTGGGAAAAGATGGCCAAGGCACCAAGGAGCCTATTCGATCTTTCTTGCTTGCTTTCACTGGTGGCCTAGTGGCAACTGATTCACTGGGATGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.16

Weight (kDa)

8.72

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 153 - 191 3.5e-10 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020072)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006267.1_g000005
rosa_roxburghii Rroxscaffold_4G00279320
rosa_samantha Rh1AG446000 Rh1BG401300 Rh1CG415700 Rh1DG431500
rosa_wichuraiana Rw1G038820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 518
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 511
AfaI GTAC 1 cut(s) 333
AgsI TTSAA 2 cut(s) 99, 304
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 5 cut(s) 79, 125, 170, 245, 463
AluI AGCT 5 cut(s) 79, 125, 170, 245, 463
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 5 cut(s) 40, 104, 277, 511, 562
ApeKI GCWGC 3 cut(s) 34, 125, 170
AspS9I GGNCC 2 cut(s) 41, 105
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 156
BalI TGGCCA 1 cut(s) 513
BanI GGYRCC 1 cut(s) 518
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbsI GAAGAC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 121
BbvI GCAGC 3 cut(s) 46, 112, 157
BccI CCATC 3 cut(s) 197, 469, 503
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciVI GTATCC 1 cut(s) 473
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 566
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 3 cut(s) 35, 126, 171
BlsI GCNGC 3 cut(s) 36, 127, 172
Bme1390I CCNGG 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 41, 105
BmiI GGNNCC 4 cut(s) 21, 186, 520, 528
BmrFI CCNGG 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 182, 371
BmuI ACTGGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 296, 514, 522
Bse1I ACTGG 2 cut(s) 562, 588
BseDI CCNNGG 3 cut(s) 296, 514, 522
BseGI GGATG 1 cut(s) 593
BseMII CTCAG 3 cut(s) 94, 135, 356
BseNI ACTGG 2 cut(s) 562, 588
BseXI GCAGC 3 cut(s) 46, 112, 157
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 5 cut(s) 42, 106, 279, 513, 564
BshNI GGYRCC 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 5 cut(s) 42, 106, 279, 513, 564
Bso31I GGTCTC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 156
Bsp143I GATC 2 cut(s) 322, 536
BspANI GGCC 5 cut(s) 42, 106, 279, 513, 564
BspCNI CTCAG 3 cut(s) 93, 134, 355
BspLI GGNNCC 4 cut(s) 21, 186, 520, 528
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 145
BsrI ACTGG 2 cut(s) 562, 588
BssECI CCNNGG 3 cut(s) 296, 514, 522
BssMI GATC 2 cut(s) 322, 536
BssT1I CCWWGG 2 cut(s) 514, 522
Bst4CI ACNGT 3 cut(s) 24, 224, 457
BstC8I GCNNGC 2 cut(s) 229, 549
BstDEI CTNAG 3 cut(s) 80, 121, 342
BstF5I GGATG 1 cut(s) 593
BstKTI GATC 2 cut(s) 325, 539
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 322, 536
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 46, 112, 157
BstV2I GAAGAC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 5 cut(s) 42, 106, 279, 513, 564
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 3 cut(s) 229, 555, 581
Cac8I GCNNGC 2 cut(s) 229, 549
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 41, 105
Csp6I GTAC 1 cut(s) 332
CviAII CATG 2 cut(s) 38, 358
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 80, 121, 342
DpnI GATC 2 cut(s) 324, 538
DpnII GATC 2 cut(s) 322, 536
EaeI YGGCCR 1 cut(s) 511
Eco130I CCWWGG 2 cut(s) 514, 522
Eco147I AGGCCT 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 514, 522
ErhI CCWWGG 2 cut(s) 514, 522
FaeI CATG 2 cut(s) 41, 361
FaiI YATR 3 cut(s) 39, 359, 380
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FatI CATG 2 cut(s) 37, 357
Fnu4HI GCNGC 3 cut(s) 35, 126, 171
Fsp4HI GCNGC 3 cut(s) 35, 126, 171
FspBI CTAG 1 cut(s) 566
GluI GCNGC 3 cut(s) 35, 126, 171
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 5 cut(s) 42, 106, 279, 513, 564
HapII CCGG 1 cut(s) 296
Hin1II CATG 2 cut(s) 41, 361
HinfI GANTC 3 cut(s) 116, 137, 578
HpaII CCGG 1 cut(s) 296
HphI GGTGA 1 cut(s) 207
Hpy188I TCNGA 3 cut(s) 83, 322, 345
Hpy188III TCNNGA 4 cut(s) 148, 240, 304, 326
HpyAV CCTTC 4 cut(s) 99, 269, 302, 482
HpyCH4III ACNGT 3 cut(s) 24, 224, 457
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 5 cut(s) 47, 62, 128, 173, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 80, 121, 342
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 2 cut(s) 41, 361
Kzo9I GATC 2 cut(s) 322, 536
LmnI GCTCC 5 cut(s) 31, 190, 391, 460, 526
LpnPI CCDG 9 cut(s) 57, 147, 208, 253, 309, 339, 411, 543, 569
Lsp1109I GCAGC 3 cut(s) 46, 112, 157
LweI GCATC 2 cut(s) 182, 371
MaeI CTAG 1 cut(s) 566
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 400
MalI GATC 2 cut(s) 324, 538
MboI GATC 2 cut(s) 322, 536
MboII GAAGA 4 cut(s) 87, 303, 484, 497
MflI RGATCY 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 513
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 2 cut(s) 125, 146
MnlI CCTC 5 cut(s) 96, 130, 290, 300, 403
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 586
Msp20I TGGCCA 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 125, 170
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 297
NdeII GATC 2 cut(s) 322, 536
NlaIII CATG 2 cut(s) 41, 361
NlaIV GGNNCC 4 cut(s) 21, 186, 520, 528
NmuCI GTSAC 1 cut(s) 400
PceI AGGCCT 1 cut(s) 279
PfeI GAWTC 1 cut(s) 578
PkrI GCNGC 3 cut(s) 36, 127, 172
PleI GAGTC 2 cut(s) 124, 145
PpsI GAGTC 2 cut(s) 124, 145
PspN4I GGNNCC 4 cut(s) 21, 186, 520, 528
PspPI GGNCC 2 cut(s) 41, 105
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 2 cut(s) 125, 170
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 586
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 3 cut(s) 35, 126, 171
Sau3AI GATC 2 cut(s) 322, 536
Sau96I GGNCC 2 cut(s) 41, 105
SchI GAGTC 2 cut(s) 125, 146
ScrFI CCNGG 1 cut(s) 297
SfaNI GCATC 2 cut(s) 182, 371
SmiMI CAYNNNNRTG 1 cut(s) 586
SseBI AGGCCT 1 cut(s) 279
SspMI CTAG 1 cut(s) 566
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 2 cut(s) 514, 522
TaaI ACNGT 3 cut(s) 24, 224, 457
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 9, 140, 535
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 3 cut(s) 229, 562, 588
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 3 cut(s) 34, 125, 170
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 81, 288
TspRI CASTG 3 cut(s) 229, 562, 588
XspI CTAG 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.