Rh1AG446000

R3H domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020072
Physical Location & Seq
Reverse (-)
66590536 .. 66592864
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG446000.1

Sequence Viewer

Length: 615 bp
ATGGGGAGGAAGAAGAGCAAAAAAATTGAACAAACAACACCGCCATTTGACCGGAGGGGTCAGCATGGTCCTGCACTTTGGAATGGTGCATTTTTCACTCATCAGCTCAGAAAGCCTTCATCTTCAAATAGGCCCAAAAGAGAGTCCTCAGCTGCATTACCAGAGTCGAATGTCAAGAGGCCCCGAGTTGCGTCAGCTGCATCATCATCGGCTCCCATCTCCAGAGCTAATGGTAAGGGGAAAGACAGAGCCAATGAAGGCCTTAAACCTTGCCTTCCGGGGTTCAAGAGGTCTTCTTTGTCAGATCCTGATGTACCTACTGCTCAGAATGTCAGCAACATGGCATCTAACCCAATCAACATACCAAATGTGGAGCAACCTGTCATTAATGAGGCTTTAGAAACTCCGTTTGGGTTTGCAAAAAGTAGCACTTTTACTATGAAGCTTTTTAAGAAGATGGGATACGAAGAAGGGAGTGGCTTGGGAAAAGATGGCCAAGGCATTAAGGAGCCTATTCGAGTTGGCATATGGACAGAAAAGCAGGGATTGGGCTTCAAAACAGCTCAGACATCAGAGCAGAATGCTGGGGATCAGAATGGGAAGCAGAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch R3H

Protein Analysis

204

Amino Acids

22.09

Weight (kDa)

10.12

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 144 - 184 2.7e-13 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020072)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006267.1_g000005
rosa_roxburghii Rroxscaffold_4G00279320
rosa_samantha Rh1AG446000 Rh1BG401300 Rh1CG415700 Rh1DG431500
rosa_wichuraiana Rw1G038820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 299, 597
AcoI YGGCCR 1 cut(s) 493
AfaI GTAC 1 cut(s) 315
AgsI TTSAA 4 cut(s) 29, 126, 286, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 6 cut(s) 106, 152, 197, 227, 445, 563
AluI AGCT 6 cut(s) 106, 152, 197, 227, 445, 563
AlwI GGATC 2 cut(s) 299, 597
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 4 cut(s) 131, 179, 259, 493
ApeKI GCWGC 2 cut(s) 152, 197
AseI ATTAAT 1 cut(s) 387
Asp700I GAANNNNTTC 1 cut(s) 115
AspS9I GGNCC 3 cut(s) 68, 132, 180
AsuC2I CCSGG 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 495
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbsI GAAGAC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 139, 184
BccI CCATC 3 cut(s) 224, 451, 485
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciVI GTATCC 1 cut(s) 455
BcnI CCSGG 1 cut(s) 279
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 2 cut(s) 153, 198
BlsI GCNGC 2 cut(s) 154, 199
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 68, 132, 180
BmiI GGNNCC 3 cut(s) 182, 213, 510
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 209, 353
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 278, 496
BsaWI WCCGGW 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 610
BseDI CCNNGG 2 cut(s) 278, 496
BseMII CTCAG 4 cut(s) 121, 162, 338, 578
BseNI ACTGG 1 cut(s) 610
BseXI GCAGC 2 cut(s) 139, 184
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 4 cut(s) 133, 181, 261, 495
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 52, 278
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 4 cut(s) 133, 181, 261, 495
BsoBI CYCGRG 1 cut(s) 183
Bsp143I GATC 2 cut(s) 304, 589
BspACI CCGC 1 cut(s) 41
BspANI GGCC 4 cut(s) 133, 181, 261, 495
BspCNI CTCAG 4 cut(s) 120, 161, 337, 577
BspLI GGNNCC 3 cut(s) 182, 213, 510
BspPI GGATC 2 cut(s) 299, 597
BspQI GCTCTTC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 2 cut(s) 278, 496
BssMI GATC 2 cut(s) 304, 589
BssT1I CCWWGG 1 cut(s) 496
Bst6I CTCTTC 1 cut(s) 8
BstDEI CTNAG 4 cut(s) 107, 148, 324, 564
BstKTI GATC 2 cut(s) 307, 592
BstMBI GATC 2 cut(s) 304, 589
BstMWI GCNNNNNNNGC 2 cut(s) 112, 197
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 139, 184
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 4 cut(s) 133, 181, 261, 495
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 3 cut(s) 68, 132, 180
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 314
CviAII CATG 2 cut(s) 65, 340
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 4 cut(s) 107, 148, 324, 564
DpnI GATC 2 cut(s) 306, 591
DpnII GATC 2 cut(s) 304, 589
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 2 cut(s) 68, 343
FaiI YATR 6 cut(s) 66, 341, 362, 440, 527, 529
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FatI CATG 2 cut(s) 64, 339
FauNDI CATATG 1 cut(s) 527
Fnu4HI GCNGC 2 cut(s) 153, 198
Fsp4HI GCNGC 2 cut(s) 153, 198
GluI GCNGC 2 cut(s) 153, 198
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 4 cut(s) 133, 181, 261, 495
HapII CCGG 2 cut(s) 52, 278
HgaI GACGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 68, 343
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 2 cut(s) 143, 164
HpaII CCGG 2 cut(s) 52, 278
Hpy188I TCNGA 6 cut(s) 110, 304, 327, 567, 574, 594
Hpy188III TCNNGA 4 cut(s) 175, 222, 286, 308
HpyAV CCTTC 4 cut(s) 126, 251, 284, 464
HpyCH4V TGCA 5 cut(s) 74, 89, 155, 200, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 197
HpyF3I CTNAG 4 cut(s) 107, 148, 324, 564
Hsp92II CATG 2 cut(s) 68, 343
Kzo9I GATC 2 cut(s) 304, 589
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 3 cut(s) 217, 373, 508
LpnPI CCDG 9 cut(s) 65, 84, 174, 235, 291, 321, 393, 527, 570
Lsp1109I GCAGC 2 cut(s) 139, 184
LweI GCATC 2 cut(s) 209, 353
MalI GATC 2 cut(s) 306, 591
MboI GATC 2 cut(s) 304, 589
MboII GAAGA 6 cut(s) 22, 25, 114, 285, 466, 479
MflI RGATCY 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 495
MlyI GAGTC 2 cut(s) 152, 173
MnlI CCTC 5 cut(s) 48, 157, 171, 282, 385
Mox20I TGGCCA 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 115
MscI TGGCCA 1 cut(s) 495
MseI TTAA 4 cut(s) 264, 387, 450, 504
Msp20I TGGCCA 1 cut(s) 495
MspA1I CMGCKG 2 cut(s) 152, 197
MspI CCGG 2 cut(s) 52, 278
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 586
MwoI GCNNNNNNNGC 2 cut(s) 112, 197
NciI CCSGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 527
NdeII GATC 2 cut(s) 304, 589
NlaIII CATG 2 cut(s) 68, 343
NlaIV GGNNCC 3 cut(s) 182, 213, 510
PceI AGGCCT 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 154, 199
PleI GAGTC 2 cut(s) 151, 172
PpsI GAGTC 2 cut(s) 151, 172
PshBI ATTAAT 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 584
PspN4I GGNNCC 3 cut(s) 182, 213, 510
PspPI GGNCC 3 cut(s) 68, 132, 180
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 152, 197
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 264, 387, 450, 504
SatI GCNGC 2 cut(s) 153, 198
Sau3AI GATC 2 cut(s) 304, 589
Sau96I GGNCC 3 cut(s) 68, 132, 180
SchI GAGTC 2 cut(s) 152, 173
ScrFI CCNGG 1 cut(s) 279
SfaNI GCATC 2 cut(s) 209, 353
SinI GGWCC 1 cut(s) 68
Sse9I AATT 1 cut(s) 24
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 1 cut(s) 496
TaqI TCGA 2 cut(s) 167, 517
TasI AATT 1 cut(s) 24
Tru1I TTAA 4 cut(s) 264, 387, 450, 504
Tru9I TTAA 4 cut(s) 264, 387, 450, 504
TseI GCWGC 2 cut(s) 152, 197
TspDTI ATGAA 3 cut(s) 108, 270, 455
TspGWI ACGGA 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.