Rh1CG415700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020072
Physical Location & Seq
Reverse (-)
67702781 .. 67705399
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG415700.1

Sequence Viewer

Length: 624 bp
ATGGGAAGGAAGAAGAGCAAAAAAATTGAACAAACAACACCGCAATTTGACCGGAGGGAGCAGCATGGCCCTGCACTTTGGAATGGTGCATTTTTCACTCATCAGCTCAGAGAGCCTTCATCTTCAAAGAGGCCCAAAAGAGAGTCCTCAGCTGCATTACCAGAGTCGAATGTCAAGAGACCCCGAGTTGTGTCAGCTGCATCATCATCGGCTCCCATCTCCAGCCAAACCACATTCGGCTCACCTAACAGTGCTTGCTTTGTTTCCAGAGCTAATGGTAAGGGGAAAGAGAGAGCCAATGAAGGCCTCAAACCTTGCCTTCCGGGGTTCAAGAGGTCTTCTTTGTCAGATCCTGATGTACCTACTGCTCAGAATGTCAGCAACATGGCATCTAACCCAATCAACATACCAAACGTGGAGCAACCTGTCACTAATGAGGCTTTAGAAACTTCGTTTGGGTTTGCAAAAAGTAGCACTTTTACTGTGGAGCTTTTTAAGAAGATGGGATACGAAGAAGGGAGTGGTTTGGGAAAAGATGGCCAAGGCACCAAGGAGCCTATTCGATCTTTCTTGCTTGCTTTCACTGGTGGCCTAGTGGCAACTGATTCACTGGGATGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.21

Weight (kDa)

9.68

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 162 - 200 3.8e-10 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020072)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006267.1_g000005
rosa_roxburghii Rroxscaffold_4G00279320
rosa_samantha Rh1AG446000 Rh1BG401300 Rh1CG415700 Rh1DG431500
rosa_wichuraiana Rw1G038820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 538
AfaI GTAC 1 cut(s) 360
AgsI TTSAA 3 cut(s) 29, 126, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 5 cut(s) 106, 152, 197, 272, 490
AluI AGCT 5 cut(s) 106, 152, 197, 272, 490
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 5 cut(s) 67, 131, 304, 538, 589
ApeKI GCWGC 3 cut(s) 61, 152, 197
AspS9I GGNCC 2 cut(s) 68, 132
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 234
AvaI CYCGRG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 540
BanI GGYRCC 1 cut(s) 545
BarI GAAGNNNNNNTAC 2 cut(s) 491, 523
BbsI GAAGAC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 73, 139, 184
BccI CCATC 3 cut(s) 224, 496, 530
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciVI GTATCC 1 cut(s) 500
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 593
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 3 cut(s) 62, 153, 198
BlsI GCNGC 3 cut(s) 63, 154, 199
Bme1390I CCNGG 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 68, 132
BmiI GGNNCC 3 cut(s) 213, 547, 555
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 2 cut(s) 209, 398
BmuI ACTGGG 1 cut(s) 620
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 3 cut(s) 323, 541, 549
BsaWI WCCGGW 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 589, 615
BseDI CCNNGG 3 cut(s) 323, 541, 549
BseGI GGATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 121, 162, 383
BseNI ACTGG 2 cut(s) 589, 615
BseXI GCAGC 3 cut(s) 73, 139, 184
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 5 cut(s) 69, 133, 306, 540, 591
BshNI GGYRCC 1 cut(s) 545
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 52, 323
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 5 cut(s) 69, 133, 306, 540, 591
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 183
Bsp143I GATC 2 cut(s) 349, 563
BspACI CCGC 1 cut(s) 41
BspANI GGCC 5 cut(s) 69, 133, 306, 540, 591
BspCNI CTCAG 3 cut(s) 120, 161, 382
BspLI GGNNCC 3 cut(s) 213, 547, 555
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 172
BsrI ACTGG 2 cut(s) 589, 615
BssECI CCNNGG 3 cut(s) 323, 541, 549
BssMI GATC 2 cut(s) 349, 563
BssT1I CCWWGG 2 cut(s) 541, 549
Bst4CI ACNGT 2 cut(s) 251, 484
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 256, 576
BstDEI CTNAG 3 cut(s) 107, 148, 369
BstF5I GGATG 1 cut(s) 620
BstKTI GATC 2 cut(s) 352, 566
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 349, 563
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 73, 139, 184
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 5 cut(s) 69, 133, 306, 540, 591
BtsCI GGATG 1 cut(s) 620
BtsIMutI CAGTG 3 cut(s) 256, 582, 608
Cac8I GCNNGC 2 cut(s) 256, 576
CaiI CAGNNNCTG 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 68, 132
Csp6I GTAC 1 cut(s) 359
CviAII CATG 2 cut(s) 65, 385
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 3 cut(s) 107, 148, 369
DpnI GATC 2 cut(s) 351, 565
DpnII GATC 2 cut(s) 349, 563
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 541, 549
Eco147I AGGCCT 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 541, 549
ErhI CCWWGG 2 cut(s) 541, 549
FaeI CATG 2 cut(s) 68, 388
FaiI YATR 3 cut(s) 66, 386, 407
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FatI CATG 2 cut(s) 64, 384
Fnu4HI GCNGC 3 cut(s) 62, 153, 198
Fsp4HI GCNGC 3 cut(s) 62, 153, 198
FspBI CTAG 1 cut(s) 593
GluI GCNGC 3 cut(s) 62, 153, 198
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 5 cut(s) 69, 133, 306, 540, 591
HapII CCGG 2 cut(s) 52, 323
Hin1II CATG 2 cut(s) 68, 388
HinfI GANTC 3 cut(s) 143, 164, 605
HpaII CCGG 2 cut(s) 52, 323
HphI GGTGA 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 110, 349, 372
Hpy188III TCNNGA 4 cut(s) 175, 267, 331, 353
HpyAV CCTTC 4 cut(s) 126, 296, 329, 509
HpyCH4III ACNGT 2 cut(s) 251, 484
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 5 cut(s) 74, 89, 155, 200, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 107, 148, 369
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 2 cut(s) 68, 388
Kzo9I GATC 2 cut(s) 349, 563
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 5 cut(s) 58, 217, 418, 487, 553
Lsp1109I GCAGC 3 cut(s) 73, 139, 184
LweI GCATC 2 cut(s) 209, 398
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 351, 565
MboI GATC 2 cut(s) 349, 563
MboII GAAGA 6 cut(s) 22, 25, 114, 330, 511, 524
MflI RGATCY 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 2 cut(s) 24, 44
MluNI TGGCCA 1 cut(s) 540
MlyI GAGTC 2 cut(s) 152, 173
MnlI CCTC 6 cut(s) 48, 123, 157, 317, 327, 430
Mox20I TGGCCA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 540
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 613
Msp20I TGGCCA 1 cut(s) 540
MspA1I CMGCKG 2 cut(s) 152, 197
MspI CCGG 2 cut(s) 52, 323
MspR9I CCNGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 324
NdeII GATC 2 cut(s) 349, 563
NlaIII CATG 2 cut(s) 68, 388
NlaIV GGNNCC 3 cut(s) 213, 547, 555
NmuCI GTSAC 1 cut(s) 427
PceI AGGCCT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 3 cut(s) 63, 154, 199
PleI GAGTC 2 cut(s) 151, 172
PpsI GAGTC 2 cut(s) 151, 172
PspN4I GGNNCC 3 cut(s) 213, 547, 555
PspPI GGNCC 2 cut(s) 68, 132
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 2 cut(s) 152, 197
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 3 cut(s) 62, 153, 198
Sau3AI GATC 2 cut(s) 349, 563
Sau96I GGNCC 2 cut(s) 68, 132
SchI GAGTC 2 cut(s) 152, 173
ScrFI CCNGG 1 cut(s) 324
SfaNI GCATC 2 cut(s) 209, 398
SmiMI CAYNNNNRTG 1 cut(s) 613
Sse9I AATT 2 cut(s) 24, 44
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 593
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 2 cut(s) 541, 549
TaaI ACNGT 2 cut(s) 251, 484
TaiI ACGT 1 cut(s) 417
TaqI TCGA 2 cut(s) 167, 562
TasI AATT 2 cut(s) 24, 44
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 3 cut(s) 256, 589, 615
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 3 cut(s) 61, 152, 197
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 108, 315
TspRI CASTG 3 cut(s) 256, 589, 615
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.