Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006367.1

Orthogroup ID

OG0009285

Physical Location & Seq

Genomic Coordinates Forward (+)

3703 .. 6645

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggacgctgtcgtcggacgggatctattgtcaagcaatcaaaggtccctcaatcggggttctcttgctctggatcaggggtgtcggtatcaagttgcagggggactcacggtggcggggtgggtgaggctcagttctggcaggacgaactggtggggcagatgggatggggatgttggatctgcagtggttcttctcaggctggttgcacgaggctggtggatgcgagttgatcagctttgtttcggggctgggagtctttccagatctgatcggggcatggtggctggtagtccagcgtcttgggacaattgggttggagaagcggtggtggctagacgcaggggagggtggtatgatgcaggcgggcgcggcttctctggggtggtggagtctcagctttggtggtggtggcccaagcagaaaagaattgggctgggccttcaatcgtggctgtgtgcacgcggtgacattcctgatgtatatacggtgaggtctcttattgaagacattagggatgtaaggtttcataaggtcgagactagcttagaatcatttgaggatgctcgctcttccgcagtgaaggttaaaaatctgtccgcaatggaagtgaatttagttcgtccatttgttgggagagccttacaggcattttataagcatggcagtccagagctggttccaaatccagagagaatgcctcccagacggccacaagcaactgataacgtccaaagagtaagtgcttatgtgatccatattcttttgttttctttcatcagtagaattgagggagatgaagtgaccatttatcgtattaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000811 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0031261 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902292 GO:1902315 GO:1902969 GO:1902975 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

274

Amino Acids

30.78

Weight (kDa)

9.87

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	154 - 211	1.9e-07	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12530 AT3G12530 AT3G12530 AT3G12530
fragaria_vesca	FvH4_7g22520
malus_domestica	MD01G1134500.v1.1 MD07G1199100.v1.1
prunus_persica	Prupe.2G235900_v2.0.a1 Prupe.2G235900_v2.0.a1
pyrus_communis	pycom01g15520 pycom07g18620
rosa_chinensis	RchiOBHm_Chr1g0367201
rosa_laevigata	RLG00000027292
rosa_multiflora	Rmu_sc0006367.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289550
rosa_rugosa	Rorug01G0335100 Rorug01G0335200
rosa_samantha	Rh1AG342000 Rh1BG302400 Rh1CG318800 Rh1DG334900
rosa_wichuraiana	Rw1G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AasI	GACNNNNNNGTC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccII	CGCG	2 cut(s)	372, 465
AciI	CCGC	7 cut(s)	116, 326, 366, 372, 465, 576, 600
AclWI	GGATC	4 cut(s)	30, 81, 187, 748
AcoI	YGGCCR	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	613
AdeI	CACNNNGTG	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	54, 55, 632
AgsI	TTSAA	2 cut(s)	446, 506
AluBI	AGCT	4 cut(s)	238, 400, 546, 676
AluI	AGCT	4 cut(s)	238, 400, 546, 676
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	3 cut(s)	399, 501, 533
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	4 cut(s)	30, 81, 187, 748
AoxI	GGCC	3 cut(s)	413, 439, 710
ApaLI	GTGCAC	1 cut(s)	459
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	45, 414, 439
AsuHPI	GGTGA	3 cut(s)	136, 479, 502
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	463
BccI	CCATC	2 cut(s)	156, 161
BceAI	ACGGC	1 cut(s)	725
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	399, 501, 533
BfaI	CTAG	3 cut(s)	336, 543, 823
BfmI	CTRYAG	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	647
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	3 cut(s)	45, 414, 439
BmiI	GGNNCC	2 cut(s)	47, 681
BmsI	GCATC	3 cut(s)	213, 349, 553
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
BsaI	GGTCTC	1 cut(s)	501
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 55, 632
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	609
BseGI	GGATG	5 cut(s)	172, 178, 228, 523, 568
BseLI	CCNNNNNNNGG	3 cut(s)	54, 55, 632
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	145, 211, 410
BseNI	ACTGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	463
BseYI	CCCAGC	2 cut(s)	251, 436
Bsh1236I	CGCG	2 cut(s)	372, 465
BshFI	GGCC	3 cut(s)	415, 441, 712
BsiHKAI	GWGCWC	1 cut(s)	463
BslFI	GGGAC	3 cut(s)	31, 117, 320
BslI	CCNNNNNNNGG	3 cut(s)	54, 55, 632
BsmAI	GTCTC	3 cut(s)	399, 501, 533
BsmFI	GGGAC	3 cut(s)	31, 117, 320
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	3 cut(s)	415, 441, 712
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
BspACI	CCGC	7 cut(s)	116, 326, 366, 372, 465, 576, 600
BspANI	GGCC	3 cut(s)	415, 441, 712
BspCNI	CTCAG	3 cut(s)	144, 210, 409
BspFNI	CGCG	2 cut(s)	372, 465
BspLI	GGNNCC	2 cut(s)	47, 681
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	4 cut(s)	30, 81, 187, 748
BspQI	GCTCTTC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	112, 490
Bst6I	CTCTTC	1 cut(s)	577
BstC8I	GCNNGC	4 cut(s)	364, 368, 463, 568
BstDEI	CTNAG	4 cut(s)	131, 197, 396, 547
BstF5I	GGATG	5 cut(s)	172, 178, 228, 523, 568
BstFNI	CGCG	2 cut(s)	372, 465
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	7 cut(s)	25, 76, 182, 235, 269, 274, 756
BstMAI	GTCTC	3 cut(s)	399, 501, 533
BstMBI	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 372, 647
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	2 cut(s)	372, 465
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	3 cut(s)	22, 179, 266
BstXI	CCANNNNNNTGG	1 cut(s)	303
BstYI	RGATCY	3 cut(s)	22, 179, 266
BsuRI	GGCC	3 cut(s)	415, 441, 712
BtsCI	GGATG	5 cut(s)	172, 178, 228, 523, 568
BtsI	GCAGTG	2 cut(s)	192, 585
BtsIMutI	CAGTG	2 cut(s)	192, 585
Cac8I	GCNNGC	4 cut(s)	364, 368, 463, 568
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	3 cut(s)	45, 414, 439
CseI	GACGC	3 cut(s)	14, 288, 348
CviAII	CATG	2 cut(s)	280, 662
DdeI	CTNAG	4 cut(s)	131, 197, 396, 547
DpnI	GATC	7 cut(s)	24, 75, 181, 234, 268, 273, 755
DpnII	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
DraIII	CACNNNGTG	1 cut(s)	467
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	45
FaeI	CATG	2 cut(s)	283, 665
FaiI	YATR	9 cut(s)	281, 357, 484, 486, 531, 657, 663, 750, 759
FaqI	GGGAC	3 cut(s)	31, 117, 320
FatI	CATG	2 cut(s)	279, 661
FauI	CCCGC	2 cut(s)	109, 359
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	5 cut(s)	179, 185, 235, 530, 575
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	3 cut(s)	336, 543, 823
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	1 cut(s)	373
GsaI	CCCAGC	2 cut(s)	255, 440
HaeIII	GGCC	3 cut(s)	415, 441, 712
HgaI	GACGC	3 cut(s)	14, 288, 348
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	283, 665
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	4 cut(s)	105, 256, 392, 551
HphI	GGTGA	3 cut(s)	136, 479, 502
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	17, 271
Hpy188III	TCNNGA	6 cut(s)	71, 264, 476, 538, 671, 689
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	452, 577
HpyCH4III	ACNGT	2 cut(s)	112, 490
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	5 cut(s)	98, 185, 209, 362, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 372, 647
HpyF3I	CTNAG	4 cut(s)	131, 197, 396, 547
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	2 cut(s)	283, 665
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
LguI	GCTCTTC	1 cut(s)	577
LweI	GCATC	3 cut(s)	213, 349, 553
MaeI	CTAG	3 cut(s)	336, 543, 823
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	467, 802
MalI	GATC	7 cut(s)	24, 75, 181, 234, 268, 273, 755
MboI	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
MboII	GAAGA	3 cut(s)	185, 518, 564
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	3 cut(s)	22, 179, 266
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	4 cut(s)	310, 429, 613, 786
MlyI	GAGTC	3 cut(s)	99, 265, 401
MmeI	TCCRAC	2 cut(s)	157, 298
MnlI	CCTC	8 cut(s)	59, 120, 206, 341, 486, 553, 711, 784
MseI	TTAA	2 cut(s)	588, 819
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	702
MvnI	CGCG	2 cut(s)	372, 465
MwoI	GCNNNNNNNGC	3 cut(s)	332, 372, 647
NdeII	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
NlaIII	CATG	2 cut(s)	283, 665
NlaIV	GGNNCC	2 cut(s)	47, 681
NmuCI	GTSAC	2 cut(s)	467, 802
PciSI	GCTCTTC	1 cut(s)	577
PctI	GAATGC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	551
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	1 cut(s)	374
PleI	GAGTC	3 cut(s)	99, 264, 400
PpsI	GAGTC	3 cut(s)	99, 264, 400
PpuMI	RGGWCCY	1 cut(s)	45
PsiI	TTATAA	1 cut(s)	657
Psp5II	RGGWCCY	1 cut(s)	45
PspFI	CCCAGC	2 cut(s)	251, 436
PspN4I	GGNNCC	2 cut(s)	47, 681
PspPI	GGNCC	3 cut(s)	45, 414, 439
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	3 cut(s)	22, 179, 266
PsyI	GACNNNGTC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	588, 819
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	7 cut(s)	22, 73, 179, 232, 266, 271, 753
Sau96I	GGNCC	3 cut(s)	45, 414, 439
SchI	GAGTC	3 cut(s)	99, 265, 401
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	3 cut(s)	213, 349, 553
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	45
Sse9I	AATT	4 cut(s)	310, 429, 613, 786
SsiI	CCGC	7 cut(s)	116, 326, 366, 372, 465, 576, 600
SspMI	CTAG	3 cut(s)	336, 543, 823
TaaI	ACNGT	2 cut(s)	112, 490
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	537
TasI	AATT	4 cut(s)	310, 429, 613, 786
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	2 cut(s)	588, 819
Tru9I	TTAA	2 cut(s)	588, 819
TscAI	CASTG	2 cut(s)	192, 585
TseFI	GTSAC	2 cut(s)	467, 802
Tsp45I	GTSAC	2 cut(s)	467, 802
TspDTI	ATGAA	3 cut(s)	518, 766, 813
TspRI	CASTG	2 cut(s)	192, 585
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	632
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	613
XspI	CTAG	3 cut(s)	336, 543, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.