Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006373.1

Orthogroup ID

OG0006243

Physical Location & Seq

Genomic Coordinates Reverse (-)

61018 .. 76706

Gene Structure 15689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006373.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

atgaagcgcttcatctacataaacgatgatgattcatcgcactatccttactgtgacaatcgtatatcgaatagaaagtacactgtgttgaactttctccccaagaatttatgggaacaattcagccgcttcatgaatcagtactttttgttgattgcttgccttcagctatggtcacttattactccagtaaatcctgccagcacatggggtccacttatcttcatttttgcagtctctgcatcaaaagaggcctgggatgattacaaccgatatctctcagacaagaaggcaaatgagaaagaagtttgggtcgtcaggcatggcatcaaaaaacatatacaagcgcaagatattcgtcttggtaacatagtttggctgcgggagaatgatgaagtgccatgtgacctagttttgattggtacctcagaagcacaaggcctatgctatatagagactgcagccctggatggagaaactgatctgaagaccagggtcataccaccagcttgtatggggatagatcttgaactgttgcacaaaattaagggtgtaattgagtgccctaatcctgataaggacattcgaagatttgatgcaaatatgcggttgtttcccccatttattgataatgacctctgcccattaaccataaagaatactattcttcagtcatgttacttgcgaaatacagagtgggcctgtggagtagcagtttacactggcaatgaaaccaagcttggtatgactaggggcattcctgagccaaagcttacagctgttgatgctatgattgacaagttgacaggagctatatttgttttccaagtagtggtggttatggttctaggcgttgccggtaatgtctggaaggatacagaagcaaggaagcaatggtatgttctatatccagaggaaggtccttggtacgaactattagtaatccctcttcgctttgaactactttgttccatcatgatacccatatcaattaaggtatctctcgaccttgtcaagagcttgtacgcaaagtttatcgattgggatagtaaaatgattgaccgagaaacagctactccagcccatgcaacaaatacagcaataagtgaggacctgggacaagttgagtacattctgactgataaaactggtaccctaacggaaaataaaatgatatttagaaggtgttgtatcaatggcatttactatgggaatgagaatggaaatgccttaaaagatgaggagctcattgatgctatttccagtgggtcttctgatgttatacgtttccttacagttatggcgatatgtaatacagtcatacccattcaaagcaaaaatggaagtattgtgtacaaggcacaatctcaagatgaggatgctcttgttcatgctgctgcccagctacatatggtttttgtcaataaaaatgctaacattcttgagatcaaattcaacggttctacagttcagtatgaagccttggatattctggagttcacttctgatagaaaaagaatgtcagtagtggtgaaggattgtcacaatggaaggattattcttttatcaaagggcgcagatgaatcaattcttccttatgcatgtgctggacagcaaacaaggactattattgaagctgttgagcaatattctcagttgggactacggacactgtgtctagcttggcgtgaactaaaagaagaggaatatcgagaatggtctttgatgtataaagaggctagcagcacattggttgatagagagtggaggctagcggaggtctgtcaaagattagaacatgattttgaaatacttggagttactgcaatagaggatcgcctacaggatggcgtaccagagacaattgagacgctgaggaaagctggcataaacttttggatgcttactggagacaagcagaacactgccatacagatagctctttcatgcaatttcatttccccagagccaaaaggccagcttttgttacttgatgggaaaactgaagatgaagttcggagaagtttagagagagttttactcacaatgcgcataacaacttcagaacctaaggatgtggcgtttgtcattgatggctggtctcttgaaattgcactgaagcattatcggaaatcttttacagagttggcaatattgtcaaggactgctatatgttgtcgtgtgacaccatcacagaaagctcagcttgtggagattttaaaatcgtgtgactatagaacgttggccattggggatggtgggaatgatgtgagaatgatacaacaagctgacattggtgttggcattagcgggagagaaggactgcaggcagctagggccgctgattatagtattgggaagttcatgttcctgaaaagattgatacttgttcatgggcgttactcatacaaccgcacagcgtttctgtctcagtattctttttataagtcattggtcgtatgtttcatccagatttttttctcttttatttcaggggtctctggaaccagtcttttcaattctgttagcttgatggcttataatgtcttctacaccagtgttcctgttctagccagcgtccttgataaagatcttagtgaggaaactattatgcagcatccacagattctattctattgccaggcgggaaggcttctgaatcctagcacgtttgctggatggtttgggcgatcccttttccacgcaattgttgtatttgtgatcagcatacatgcttatgcttatgaaaaaagtgaaatggaggaggtttcaatggtggcgctctctggatgtatttggttgcaggcttttgtaatgacattagagacgaactcctttactatattgcaacatcttgctatatgggggaatttagctgccttctacatcatcaactggatcttcagtgccattccaggatcagggatgtatacaattatgtttcgcttgtgtagagagccttcttactggataacaatcttgctcatagttgcagcaggaatgggcccgattctagcgttgaagtacttcaggtatacatacagaccaagcaaaatcaatacactacagcaggctgaacgtttgggtgggcctatcctgtctattgggagcattgagccacaaacaagaggcgtagaaaaggaagtttctccattatcaattactcaacccaagaacagaaatccgattttcgaacctctattatcagattcacccaatgctacacgaagatcttttggttcaggaacgccttttgatttctttcaatcacagtccagattgtccatgtctaactactcaagaaacaaggacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0034204 GO:0042623 GO:0043492 GO:0044464 GO:0045332 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase Hydrolase_3 PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1105

Amino Acids

125.14

Weight (kDa)

5.98

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44240 AT5G44240
fragaria_vesca	FvH4_5g29681 FvH4_5g29681 FvH4_5g29681 FvH4_5g29681 FvH4_5g29681 FvH4_5g29681
malus_domestica	MD09G1243400.v1.1 MD17G1235400.v1.1
prunus_persica	Prupe.3G133300_v2.0.a1 Prupe.3G133300_v2.0.a1 Prupe.3G133300_v2.0.a1
pyrus_communis	pycom09g16200 pycom17g23850
rosa_chinensis	RchiOBHm_Chr7g0223111
rosa_laevigata	RLG00000002001 RLG00000002345
rosa_multiflora	Rmu_sc0006373.1_g000014
rosa_roxburghii	Rroxscaffold_3G00236330
rosa_rugosa	Rorug07G0212900 Rorug07G0212900
rosa_samantha	Rh7AG358200 Rh7BG346300 Rh7CG376500 Rh7DG353600
rosa_wichuraiana	Rw7G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2445, 2541
Acc16I	TGCGCA	1 cut(s)	2051
Acc65I	GGTACC	2 cut(s)	422, 1151
AccB1I	GGYRCC	2 cut(s)	422, 1151
AccB7I	CCANNNNNTGG	2 cut(s)	207, 832
AccI	GTMKAC	2 cut(s)	2930, 3035
AciI	CCGC	8 cut(s)	127, 382, 607, 1775, 2310, 2340, 2413, 2645
AclI	AACGTT	2 cut(s)	2240, 3079
AclWI	GGATC	4 cut(s)	1842, 2685, 2906, 2926
AcoI	YGGCCR	1 cut(s)	2244
AcsI	RAATTY	3 cut(s)	106, 1451, 2869
AcuI	CTGAAG	8 cut(s)	149, 506, 653, 2025, 2046, 2138, 2887, 3013
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	4 cut(s)	207, 832, 917, 2921
AhdI	GACNNNNNGTC	1 cut(s)	1674
AjnI	CCWGG	6 cut(s)	254, 465, 491, 1113, 2640, 2914
AjuI	GAANNNNNNNTTGG	2 cut(s)	723, 755
Alw21I	GWGCWC	1 cut(s)	1248
Alw26I	GTCTC	9 cut(s)	241, 449, 1853, 1862, 1905, 2106, 2433, 2503, 2819
AlwI	GGATC	4 cut(s)	1842, 2685, 2906, 2926
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	8 cut(s)	252, 439, 699, 1975, 2244, 2337, 3004, 3089
ApaI	GGGCCC	1 cut(s)	3008
ApeKI	GCWGC	9 cut(s)	379, 461, 1394, 1397, 1743, 2330, 2614, 2876, 2993
ApoI	RAATTY	3 cut(s)	106, 1451, 2869
Asp700I	GAANNNNTTC	3 cut(s)	8, 1587, 3026
Asp718I	GGTACC	2 cut(s)	422, 1151
AspLEI	GCGC	5 cut(s)	9, 349, 1577, 2052, 2782
AspS9I	GGNCC	8 cut(s)	212, 699, 920, 1111, 2337, 3004, 3005, 3089
AsuHPI	GGTGA	2 cut(s)	1543, 3204
AsuII	TTCGAA	2 cut(s)	586, 3192
AsuNHI	GCTAGC	2 cut(s)	1739, 1771
AvaII	GGWCC	3 cut(s)	212, 920, 1111
AxyI	CCTNAGG	1 cut(s)	2070
BaeGI	GKGCMC	2 cut(s)	566, 3008
BalI	TGGCCA	1 cut(s)	2246
BanI	GGYRCC	2 cut(s)	422, 1151
BanII	GRGCYC	2 cut(s)	1248, 3008
BarI	GAAGNNNNNNTAC	4 cut(s)	933, 965, 2944, 2976
BbsI	GAAGAC	3 cut(s)	494, 1263, 2539
Bbv12I	GWGCWC	1 cut(s)	1248
BbvCI	CCTCAGC	1 cut(s)	1874
BbvI	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
BccI	CCATC	9 cut(s)	464, 980, 1841, 1988, 2087, 2197, 2249, 2527, 2673
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
BciVI	GTATCC	1 cut(s)	868
BclI	TGATCA	1 cut(s)	2721
BcoDI	GTCTC	9 cut(s)	241, 449, 1853, 1862, 1905, 2106, 2433, 2503, 2819
BfmI	CTRYAG	6 cut(s)	459, 1464, 1841, 2233, 2324, 3065
BfoI	RGCGCY	2 cut(s)	10, 2783
BfuI	GTATCC	1 cut(s)	868
BglII	AGATCT	3 cut(s)	523, 2590, 3230
BlpI	GCTNAGC	1 cut(s)	2202
BmcAI	AGTACT	2 cut(s)	143, 3026
Bme1390I	CCNGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
Bme18I	GGWCC	3 cut(s)	212, 920, 1111
BmeRI	GACNNNNNGTC	1 cut(s)	1674
BmgT120I	GGNCC	8 cut(s)	212, 699, 920, 1111, 2337, 3004, 3005, 3089
BmiI	GGNNCC	5 cut(s)	213, 424, 1153, 2506, 3006
BmrFI	CCNGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
BmsI	GCATC	8 cut(s)	251, 336, 586, 775, 1243, 1369, 1890, 2626
BmtI	GCTAGC	2 cut(s)	1743, 1775
BoxI	GACNNNNGTC	1 cut(s)	494
BpiI	GAAGAC	3 cut(s)	494, 1263, 2539
BplI	GAGNNNNNCTC	4 cut(s)	2025, 2057, 2816, 2848
BpmI	CTGGAG	4 cut(s)	171, 1062, 1514, 1929
Bpu10I	CCTNAGC	2 cut(s)	762, 1874
Bpu1102I	GCTNAGC	1 cut(s)	2202
Bpu14I	TTCGAA	2 cut(s)	586, 3192
BpuEI	CTTGAG	3 cut(s)	1353, 1463, 3283
Bsa29I	ATCGAT	1 cut(s)	1038
BsaBI	GATNNNNATC	2 cut(s)	2589, 2975
BsaI	GGTCTC	2 cut(s)	2106, 2503
BsaJI	CCNNGG	6 cut(s)	255, 465, 492, 923, 1114, 1482
BsaXI	ACNNNNNCTCC	4 cut(s)	699, 729, 1060, 1090
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 832, 917, 2921
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	9 cut(s)	188, 727, 1153, 1263, 1912, 2508, 2556, 2900, 2972
Bse21I	CCTNAGG	1 cut(s)	2070
Bse3DI	GCAATG	2 cut(s)	733, 899
Bse8I	GATNNNNATC	2 cut(s)	2589, 2975
BseBI	CCWGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
BseCI	ATCGAT	1 cut(s)	1038
BseDI	CCNNGG	6 cut(s)	255, 465, 492, 923, 1114, 1482
BseJI	GATNNNNATC	2 cut(s)	2589, 2975
BseLI	CCNNNNNNNGG	4 cut(s)	207, 832, 917, 2921
BseMI	GCAATG	2 cut(s)	733, 899
BseMII	CTCAG	7 cut(s)	294, 441, 753, 1667, 1865, 2216, 2444
BseNI	ACTGG	9 cut(s)	188, 727, 1153, 1263, 1912, 2508, 2556, 2900, 2972
BseRI	GAGGAG	2 cut(s)	1256, 2777
BseSI	GKGCMC	2 cut(s)	566, 3008
BseXI	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
BseYI	CCCAGC	1 cut(s)	1401
BshFI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
BshNI	GGYRCC	2 cut(s)	422, 1151
BshVI	ATCGAT	1 cut(s)	1038
BsiHKAI	GWGCWC	1 cut(s)	1248
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	2 cut(s)	1131, 1674
BslI	CCNNNNNNNGG	4 cut(s)	207, 832, 917, 2921
BsmAI	GTCTC	9 cut(s)	241, 449, 1853, 1862, 1905, 2106, 2433, 2503, 2819
BsmBI	CGTCTC	2 cut(s)	1862, 2819
BsmFI	GGGAC	2 cut(s)	1131, 1674
BsmI	GAATGC	1 cut(s)	756
BsnI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
Bso31I	GGTCTC	2 cut(s)	2106, 2503
Bsp119I	TTCGAA	2 cut(s)	586, 3192
Bsp120I	GGGCCC	1 cut(s)	3004
Bsp1286I	GDGCHC	3 cut(s)	566, 1248, 3008
Bsp1407I	TGTACA	1 cut(s)	1353
Bsp1720I	GCTNAGC	1 cut(s)	2202
BspACI	CCGC	8 cut(s)	127, 382, 607, 1775, 2310, 2340, 2413, 2645
BspANI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
BspCNI	CTCAG	7 cut(s)	293, 440, 754, 1666, 1866, 2215, 2443
BspDI	ATCGAT	1 cut(s)	1038
BspHI	TCATGA	2 cut(s)	132, 975
BspLI	GGNNCC	5 cut(s)	213, 424, 1153, 2506, 3006
BspMAI	CTGCAG	2 cut(s)	463, 2328
BspOI	GCTAGC	2 cut(s)	1743, 1775
BspPI	GGATC	4 cut(s)	1842, 2685, 2906, 2926
BspT104I	TTCGAA	2 cut(s)	586, 3192
BspT107I	GGYRCC	2 cut(s)	422, 1151
BspTNI	GGTCTC	2 cut(s)	2106, 2503
BsrDI	GCAATG	2 cut(s)	733, 899
BsrFI	RCCGGY	1 cut(s)	857
BsrGI	TGTACA	1 cut(s)	1353
BsrI	ACTGG	9 cut(s)	188, 727, 1153, 1263, 1912, 2508, 2556, 2900, 2972
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	6 cut(s)	255, 465, 492, 923, 1114, 1482
BssNAI	GTATAC	2 cut(s)	2931, 3036
BssT1I	CCWWGG	2 cut(s)	923, 1482
Bst1107I	GTATAC	2 cut(s)	2931, 3036
Bst2UI	CCWGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
Bst4CI	ACNGT	9 cut(s)	53, 85, 534, 1297, 1318, 1460, 1468, 1674, 3273
Bst6I	CTCTTC	2 cut(s)	954, 1695
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	1353
BstBI	TTCGAA	2 cut(s)	586, 3192
BstDEI	CTNAG	9 cut(s)	280, 427, 762, 1653, 1874, 2070, 2202, 2430, 2594
BstH2I	RGCGCY	2 cut(s)	10, 2783
BstHHI	GCGC	5 cut(s)	9, 349, 1577, 2052, 2782
BstMAI	GTCTC	9 cut(s)	241, 449, 1853, 1862, 1905, 2106, 2433, 2503, 2819
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 785, 1079, 2336, 2339
BstNI	CCWGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
BstNSI	RCATGY	2 cut(s)	1605, 2735
BstPAI	GACNNNNGTC	1 cut(s)	494
BstSCI	CCNGG	6 cut(s)	254, 465, 491, 1113, 2640, 2914
BstSFI	CTRYAG	6 cut(s)	459, 1464, 1841, 2233, 2324, 3065
BstSLI	GKGCMC	2 cut(s)	566, 3008
BstV1I	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
BstV2I	GAAGAC	3 cut(s)	494, 1263, 2539
BstX2I	RGATCY	4 cut(s)	523, 2590, 2898, 3230
BstYI	RGATCY	4 cut(s)	523, 2590, 2898, 3230
BstZ17I	GTATAC	2 cut(s)	2931, 3036
Bsu15I	ATCGAT	1 cut(s)	1038
Bsu36I	CCTNAGG	1 cut(s)	2070
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
BsuTUI	ATCGAT	1 cut(s)	1038
BtgZI	GCGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	1923
BtsIMutI	CAGTG	8 cut(s)	81, 720, 1270, 1670, 1923, 2114, 2563, 2911
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	2 cut(s)	132, 975
CfoI	GCGC	5 cut(s)	9, 349, 1577, 2052, 2782
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	8 cut(s)	212, 699, 920, 1111, 2337, 3004, 3005, 3089
ClaI	ATCGAT	1 cut(s)	1038
CseI	GACGC	2 cut(s)	1879, 2566
DdeI	CTNAG	9 cut(s)	280, 427, 762, 1653, 1874, 2070, 2202, 2430, 2594
DraI	TTTAAA	1 cut(s)	2220
DriI	GACNNNNNGTC	1 cut(s)	1674
EaeI	YGGCCR	1 cut(s)	2244
Eam1104I	CTCTTC	2 cut(s)	954, 1695
Eam1105I	GACNNNNNGTC	1 cut(s)	1674
EarI	CTCTTC	2 cut(s)	954, 1695
Ecl136II	GAGCTC	1 cut(s)	1246
Eco130I	CCWWGG	2 cut(s)	923, 1482
Eco147I	AGGCCT	2 cut(s)	254, 441
Eco24I	GRGCYC	2 cut(s)	1248, 3008
Eco31I	GGTCTC	2 cut(s)	2106, 2503
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	3 cut(s)	212, 920, 1111
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	1246
Eco57I	CTGAAG	8 cut(s)	149, 506, 653, 2025, 2046, 2138, 2887, 3013
Eco81I	CCTNAGG	1 cut(s)	2070
EcoICRI	GAGCTC	1 cut(s)	1246
EcoO109I	RGGNCCY	2 cut(s)	920, 1111
EcoRII	CCWGG	6 cut(s)	254, 465, 491, 1113, 2640, 2914
EcoRV	GATATC	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	923, 1482
EcoT22I	ATGCAT	1 cut(s)	1603
EcoT38I	GRGCYC	2 cut(s)	1248, 3008
ErhI	CCWWGG	2 cut(s)	923, 1482
Esp3I	CGTCTC	2 cut(s)	1862, 2819
FalI	AAGNNNNNCTT	4 cut(s)	1965, 1997, 2190, 2222
FaqI	GGGAC	2 cut(s)	1131, 1674
FauI	CCCGC	3 cut(s)	375, 2303, 2638
FauNDI	CATATG	1 cut(s)	1410
FbaI	TGATCA	1 cut(s)	2721
FblI	GTMKAC	2 cut(s)	2930, 3035
FriOI	GRGCYC	2 cut(s)	1248, 3008
FspAI	RTGCGCAY	1 cut(s)	2051
FspI	TGCGCA	1 cut(s)	2051
GlaI	GCGC	5 cut(s)	8, 348, 1576, 2051, 2781
GsaI	CCCAGC	1 cut(s)	1405
GsuI	CTGGAG	4 cut(s)	171, 1062, 1514, 1929
HaeII	RGCGCY	2 cut(s)	10, 2783
HaeIII	GGCC	8 cut(s)	254, 441, 701, 1977, 2246, 2339, 3006, 3091
HapII	CCGG	1 cut(s)	858
HgaI	GACGC	2 cut(s)	1879, 2566
HhaI	GCGC	5 cut(s)	9, 349, 1577, 2052, 2782
Hin6I	GCGC	5 cut(s)	7, 347, 1575, 2050, 2780
HinP1I	GCGC	5 cut(s)	7, 347, 1575, 2050, 2780
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	2 cut(s)	737, 770
HinfI	GANTC	7 cut(s)	32, 136, 1583, 2626, 2659, 3010, 3209
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	2 cut(s)	1543, 3204
Hpy166II	GTNNAC	9 cut(s)	81, 215, 718, 804, 1354, 1500, 1691, 2931, 3036
Hpy8I	GTNNAC	9 cut(s)	81, 215, 718, 804, 1354, 1500, 1691, 2931, 3036
HpyCH4III	ACNGT	9 cut(s)	53, 85, 534, 1297, 1318, 1460, 1468, 1674, 3273
HpyCH4IV	ACGT	4 cut(s)	1285, 2240, 2669, 3079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 785, 1079, 2336, 2339
HpyF3I	CTNAG	9 cut(s)	280, 427, 762, 1653, 1874, 2070, 2202, 2430, 2594
HpySE526I	ACGT	4 cut(s)	1285, 2240, 2669, 3079
HspAI	GCGC	5 cut(s)	7, 347, 1575, 2050, 2780
KpnI	GGTACC	2 cut(s)	426, 1155
Ksp22I	TGATCA	1 cut(s)	2721
LmnI	GCTCC	3 cut(s)	809, 1243, 3108
Lsp1109I	GCAGC	9 cut(s)	366, 473, 1381, 1384, 1755, 2342, 2626, 2863, 3005
LweI	GCATC	8 cut(s)	251, 336, 586, 775, 1243, 1369, 1890, 2626
MaeII	ACGT	4 cut(s)	1285, 2240, 2669, 3079
MfeI	CAATTG	2 cut(s)	1863, 2706
MflI	RGATCY	4 cut(s)	523, 2590, 2898, 3230
MhlI	GDGCHC	3 cut(s)	566, 1248, 3008
MlsI	TGGCCA	1 cut(s)	2246
MluNI	TGGCCA	1 cut(s)	2246
Mox20I	TGGCCA	1 cut(s)	2246
Mph1103I	ATGCAT	1 cut(s)	1603
MroXI	GAANNNNTTC	3 cut(s)	8, 1587, 3026
MscI	TGGCCA	1 cut(s)	2246
MseI	TTAA	5 cut(s)	546, 647, 993, 1232, 2219
MslI	CAYNNNNRTG	1 cut(s)	2736
Msp20I	TGGCCA	1 cut(s)	2246
MspA1I	CMGCKG	2 cut(s)	779, 2342
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
MunI	CAATTG	2 cut(s)	1863, 2706
Mva1269I	GAATGC	1 cut(s)	756
MvaI	CCWGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
MwoI	GCNNNNNNNGC	5 cut(s)	239, 785, 1079, 2336, 2339
NdeI	CATATG	1 cut(s)	1410
NheI	GCTAGC	2 cut(s)	1739, 1771
NlaIV	GGNNCC	5 cut(s)	213, 424, 1153, 2506, 3006
NmuCI	GTSAC	6 cut(s)	53, 174, 404, 1541, 2182, 2228
NsbI	TGCGCA	1 cut(s)	2051
NsiI	ATGCAT	1 cut(s)	1603
NspI	RCATGY	2 cut(s)	1605, 2735
NspV	TTCGAA	2 cut(s)	586, 3192
PagI	TCATGA	2 cut(s)	132, 975
PceI	AGGCCT	2 cut(s)	254, 441
PctI	GAATGC	1 cut(s)	756
PdmI	GAANNNNTTC	3 cut(s)	8, 1587, 3026
PfeI	GAWTC	7 cut(s)	32, 136, 1583, 2626, 2659, 3010, 3209
PflFI	GACNNNGTC	1 cut(s)	1010
PflMI	CCANNNNNTGG	2 cut(s)	207, 832
PfoI	TCCNGGA	1 cut(s)	2914
PpuMI	RGGWCCY	2 cut(s)	920, 1111
PshAI	GACNNNNGTC	1 cut(s)	494
PsiI	TTATAA	2 cut(s)	2445, 2541
Psp124BI	GAGCTC	1 cut(s)	1248
Psp1406I	AACGTT	2 cut(s)	2240, 3079
Psp5II	RGGWCCY	2 cut(s)	920, 1111
Psp6I	CCWGG	6 cut(s)	254, 465, 491, 1113, 2640, 2914
PspFI	CCCAGC	1 cut(s)	1401
PspGI	CCWGG	6 cut(s)	254, 465, 491, 1113, 2640, 2914
PspN4I	GGNNCC	5 cut(s)	213, 424, 1153, 2506, 3006
PspOMI	GGGCCC	1 cut(s)	3004
PspPI	GGNCC	8 cut(s)	212, 699, 920, 1111, 2337, 3004, 3005, 3089
PspPPI	RGGWCCY	2 cut(s)	920, 1111
PstI	CTGCAG	2 cut(s)	463, 2328
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	4 cut(s)	523, 2590, 2898, 3230
PsyI	GACNNNGTC	1 cut(s)	1010
PvuII	CAGCTG	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	2736
SacI	GAGCTC	1 cut(s)	1248
SaqAI	TTAA	5 cut(s)	546, 647, 993, 1232, 2219
Sau96I	GGNCC	8 cut(s)	212, 699, 920, 1111, 2337, 3004, 3005, 3089
ScaI	AGTACT	2 cut(s)	143, 3026
ScrFI	CCNGG	6 cut(s)	256, 467, 493, 1115, 2642, 2916
SduI	GDGCHC	3 cut(s)	566, 1248, 3008
SfaNI	GCATC	8 cut(s)	251, 336, 586, 775, 1243, 1369, 1890, 2626
SfcI	CTRYAG	6 cut(s)	459, 1464, 1841, 2233, 2324, 3065
SfuI	TTCGAA	2 cut(s)	586, 3192
SinI	GGWCC	3 cut(s)	212, 920, 1111
SmiMI	CAYNNNNRTG	1 cut(s)	2736
SmlI	CTYRAG	3 cut(s)	1368, 1442, 3298
SmoI	CTYRAG	3 cut(s)	1368, 1442, 3298
SseBI	AGGCCT	2 cut(s)	254, 441
SsiI	CCGC	8 cut(s)	127, 382, 607, 1775, 2310, 2340, 2413, 2645
SspI	AATATT	2 cut(s)	1649, 2154
SstI	GAGCTC	1 cut(s)	1248
StuI	AGGCCT	2 cut(s)	254, 441
StyD4I	CCNGG	6 cut(s)	254, 465, 491, 1113, 2640, 2914
StyI	CCWWGG	2 cut(s)	923, 1482
TaaI	ACNGT	9 cut(s)	53, 85, 534, 1297, 1318, 1460, 1468, 1674, 3273
TaiI	ACGT	4 cut(s)	1288, 2243, 2672, 3082
TaqI	TCGA	6 cut(s)	68, 586, 1005, 1038, 1711, 3192
TaqII	GACCGA	1 cut(s)	1077
TatI	WGTACW	5 cut(s)	78, 141, 1128, 1353, 3024
TauI	GCSGC	2 cut(s)	129, 2342
TfiI	GAWTC	7 cut(s)	32, 136, 1583, 2626, 2659, 3010, 3209
Tru1I	TTAA	5 cut(s)	546, 647, 993, 1232, 2219
Tru9I	TTAA	5 cut(s)	546, 647, 993, 1232, 2219
TscAI	CASTG	8 cut(s)	88, 727, 1270, 1677, 1930, 2121, 2563, 2911
TseFI	GTSAC	6 cut(s)	53, 174, 404, 1541, 2182, 2228
TseI	GCWGC	9 cut(s)	379, 461, 1394, 1397, 1743, 2330, 2614, 2876, 2993
Tsp45I	GTSAC	6 cut(s)	53, 174, 404, 1541, 2182, 2228
TspGWI	ACGGA	2 cut(s)	1175, 1681
TspRI	CASTG	8 cut(s)	88, 727, 1270, 1677, 1930, 2121, 2563, 2911
Tth111I	GACNNNGTC	1 cut(s)	1010
Van91I	CCANNNNNTGG	2 cut(s)	207, 832
VpaK11BI	GGWCC	3 cut(s)	212, 920, 1111
XapI	RAATTY	3 cut(s)	106, 1451, 2869
XceI	RCATGY	2 cut(s)	1605, 2735
XmiI	GTMKAC	2 cut(s)	2930, 3035
XmnI	GAANNNNTTC	3 cut(s)	8, 1587, 3026
ZrmI	AGTACT	2 cut(s)	143, 3026
Zsp2I	ATGCAT	1 cut(s)	1603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.