Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003058

Physical Location & Seq

Genomic Coordinates Forward (+)

18807534 .. 18811523

Gene Structure 3990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0212900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTGCATAAATGGAAGAGACGGGTGTGGTAAAGGAAGAGAACCGTTCTTATCTTGCTGTTCGTCTTTTAAGAGTGACGGTGGTGGTTTTCACTTGATCTCTGTTCATCCCGATGAGCTCAGATTTCCATTTGAACTGAAAAAGGAAAGCTTTTGTGATCTAAAAGTTGTCAATAATACAGAACACCATGTAGCTTTCAAGGTTAAAACCAGTGCACCTATGAAGTTCTTTGTACGGCCCAATATGGGGGTTATAAAGGCTCAGGACTCATGTATCATCAGAGTCAACCTCCGTGGCCAACGAAAATATCCTCCAAATATGGAGTGCAAAGATAAGTTTCTCCTACAGAGCACAATAGTGCCTCCAAATTCTGATTTTGATGAGCTTCCAAAATATACCTTCACCGAGGGAATCGGAAGGACAATAGAGGAATGCAAGTTTAGGGTTGTGTATATCTATCCGGGTGCAGTTCACCTACAGAATTCTTTGCAGCGCTTGAAGGAAGAAAGAGATTCAGCTGTTAAACAAACACAGATACTTCAAGAGGAACTGGATATCCTGAAGAGGCAAAGATCTCGGAAAGGGTTTGGACAAAGATTCAGATCTTGGTGGTCATCCATCATGAGTGGCGGTTGTGGTAATCATATGATCTCTGTTCATCCCAATGAGCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0033036 GO:0034204 GO:0042623 GO:0043492 GO:0044464 GO:0045332 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase Hydrolase_3 PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

225

Amino Acids

25.79

Weight (kDa)

9.15

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	33 - 125	1.5e-25	MSP (Major sperm protein) domain
Cep192_D6	PF22076	33 - 100	1.5e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003058)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890
prunus_persica	Prupe.6G122300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0283161
rosa_laevigata	RLG00000012709 RLG00000012841
rosa_multiflora	Rmu_sc0000159.1_g000014
rosa_roxburghii	Rroxscaffold_7G00184310 Rroxscaffold_7G00185720 Rroxscaffold_7G00185730
rosa_rugosa	Rorug06G0151700 Rorug06G0151800 Rorug07G0212900
rosa_samantha	Rh3DG284600 Rh6AG264600 Rh6AG264700 Rh6BG267500 Rh6BG280300 Rh6BG280400 Rh6CG266500 Rh6CG266600 Rh6DG259800 Rh6DG259900 Rh7CG376400
rosa_wichuraiana	Rw6G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AciI	CCGC	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	367, 481
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	234
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	245, 246
AgsI	TTSAA	4 cut(s)	134, 199, 499, 542
AleI	CACNNNNGTG	1 cut(s)	356
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	6 cut(s)	118, 150, 194, 385, 518, 670
AluI	AGCT	6 cut(s)	118, 150, 194, 385, 518, 670
Alw21I	GWGCWC	4 cut(s)	120, 217, 353, 672
Alw26I	GTCTC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	213
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	2 cut(s)	236, 295
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	2 cut(s)	367, 481
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	394, 464
BaeGI	GKGCMC	1 cut(s)	217
BaeI	ACNNNNGTAYC	2 cut(s)	256, 289
BalI	TGGCCA	1 cut(s)	297
BanII	GRGCYC	2 cut(s)	120, 672
Bbv12I	GWGCWC	4 cut(s)	120, 217, 353, 672
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	344, 476
BfoI	RGCGCY	1 cut(s)	496
BglII	AGATCT	2 cut(s)	572, 602
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	292, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 246
Bse1I	ACTGG	2 cut(s)	210, 555
Bse8I	GATNNNNATC	1 cut(s)	601
BseDI	CCNNGG	2 cut(s)	292, 405
BseGI	GGATG	3 cut(s)	106, 614, 658
BseJI	GATNNNNATC	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	245, 246
BseMII	CTCAG	2 cut(s)	133, 275
BseNI	ACTGG	2 cut(s)	210, 555
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	238, 297
BsiHKAI	GWGCWC	4 cut(s)	120, 217, 353, 672
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	245, 246
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	238, 297
Bsp1286I	GDGCHC	4 cut(s)	120, 217, 353, 672
Bsp143I	GATC	5 cut(s)	96, 157, 572, 602, 648
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	2 cut(s)	238, 297
BspCNI	CTCAG	2 cut(s)	132, 274
BspHI	TCATGA	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	210, 555
BssECI	CCNNGG	2 cut(s)	292, 405
BssMI	GATC	5 cut(s)	96, 157, 572, 602, 648
Bst4CI	ACNGT	2 cut(s)	45, 80
Bst6I	CTCTTC	3 cut(s)	10, 31, 557
BstDEI	CTNAG	2 cut(s)	119, 261
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	3 cut(s)	106, 614, 658
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	5 cut(s)	99, 160, 575, 605, 651
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	5 cut(s)	96, 157, 572, 602, 648
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	2 cut(s)	344, 476
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	572, 602
BstYI	RGATCY	2 cut(s)	572, 602
BsuRI	GGCC	2 cut(s)	238, 297
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	3 cut(s)	106, 614, 658
BtsIMutI	CAGTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	233
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	3 cut(s)	188, 270, 622
CviJI	RGCY	9 cut(s)	118, 150, 194, 238, 260, 297, 385, 518, 670
CviKI_1	RGCY	9 cut(s)	118, 150, 194, 238, 260, 297, 385, 518, 670
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	119, 261
DpnI	GATC	5 cut(s)	98, 159, 574, 604, 650
DpnII	GATC	5 cut(s)	96, 157, 572, 602, 648
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	3 cut(s)	10, 31, 557
EarI	CTCTTC	3 cut(s)	10, 31, 557
Ecl136II	GAGCTC	2 cut(s)	118, 670
Eco24I	GRGCYC	2 cut(s)	120, 672
Eco32I	GATATC	1 cut(s)	556
Eco47III	AGCGCT	1 cut(s)	494
Eco53kI	GAGCTC	2 cut(s)	118, 670
Eco57I	CTGAAG	1 cut(s)	581
EcoICRI	GAGCTC	2 cut(s)	118, 670
EcoRI	GAATTC	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	120, 672
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	191, 273, 625
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	3 cut(s)	187, 269, 621
FauNDI	CATATG	1 cut(s)	645
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	3 cut(s)	93, 601, 645
FriOI	GRGCYC	2 cut(s)	120, 672
Fsp4HI	GCNGC	1 cut(s)	491
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	238, 297
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	191, 273, 625
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	5 cut(s)	266, 282, 411, 512, 597
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	394, 464
Hpy166II	GTNNAC	3 cut(s)	215, 286, 472
Hpy188I	TCNGA	6 cut(s)	122, 281, 373, 416, 579, 602
Hpy188III	TCNNGA	5 cut(s)	110, 263, 542, 559, 622
Hpy8I	GTNNAC	3 cut(s)	215, 286, 472
HpyAV	CCTTC	3 cut(s)	409, 411, 493
HpyCH4III	ACNGT	2 cut(s)	45, 80
HpyCH4V	TGCA	6 cut(s)	6, 215, 327, 435, 467, 490
HpyF3I	CTNAG	2 cut(s)	119, 261
Hsp92II	CATG	3 cut(s)	191, 273, 625
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	96, 157, 572, 602, 648
LpnPI	CCDG	5 cut(s)	223, 248, 474, 536, 572
Lsp1109I	GCAGC	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	5 cut(s)	98, 159, 574, 604, 650
MboI	GATC	5 cut(s)	96, 157, 572, 602, 648
MboII	GAAGA	4 cut(s)	27, 48, 515, 574
MflI	RGATCY	2 cut(s)	572, 602
MhlI	GDGCHC	4 cut(s)	120, 217, 353, 672
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	3 cut(s)	367, 481, 673
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	260, 291
MnlI	CCTC	7 cut(s)	299, 321, 372, 400, 421, 538, 558
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	4 cut(s)	69, 204, 522, 676
MslI	CAYNNNNRTG	3 cut(s)	111, 356, 663
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	462
NdeI	CATATG	1 cut(s)	645
NdeII	GATC	5 cut(s)	96, 157, 572, 602, 648
NlaIII	CATG	3 cut(s)	191, 273, 625
NmuCI	GTSAC	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	621
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	411, 512, 597
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	2 cut(s)	260, 290
PpsI	GAGTC	2 cut(s)	260, 290
PsiI	TTATAA	1 cut(s)	254
Psp124BI	GAGCTC	2 cut(s)	120, 672
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	572, 602
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	111, 356, 663
SacI	GAGCTC	2 cut(s)	120, 672
SaqAI	TTAA	4 cut(s)	69, 204, 522, 676
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	5 cut(s)	96, 157, 572, 602, 648
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	2 cut(s)	260, 291
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	4 cut(s)	120, 217, 353, 672
SfcI	CTRYAG	2 cut(s)	344, 476
SmiMI	CAYNNNNRTG	3 cut(s)	111, 356, 663
Sse9I	AATT	3 cut(s)	367, 481, 673
SsiI	CCGC	1 cut(s)	630
SstI	GAGCTC	2 cut(s)	120, 672
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	45, 80
TasI	AATT	3 cut(s)	367, 481, 673
TfiI	GAWTC	3 cut(s)	411, 512, 597
Tru1I	TTAA	4 cut(s)	69, 204, 522, 676
Tru9I	TTAA	4 cut(s)	69, 204, 522, 676
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	95, 236, 647
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	367, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.