Rorug06G0151700

F-box WD-40 repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003058
Physical Location & Seq
Reverse (-)
21724685 .. 21727511
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0151700.1

Sequence Viewer

Length: 1536 bp
ATGTGTATTTGGTACCAAGACCCACTGCAAGGAGATTTCCCAGAAGTGATAGAGGAGTATTTGGAACATGGGGTTATGAAATGCATTGCCTTCAATCGCCGTGGTACTCTTCTTGCTGCTGGGTGCTCTGATGGTAATTGCATAATATGGGATTTTGAGACCAGGGGCATTGCTAAGGAGCTCCGTGATAAAGACTGTGTTGCTGCTATAACTAGTGTATGTTGGTCAAAGTATGGTCATCGCGTTCTTGTGTCTGCAGCTGACAAATCGTTGACACTATGGGATGTTGTCAGTGGTGAGAAGATAACAAGAACGATACTGCAACAAACCCCTCTACAAGCTCGGTTACATCCTGGTTCCTCTACTCCATCTCTCTGTCTGGCTTGCCCTCTCTCATCTGCTCCTATGATTGTTGACTTGAATACAGGAAGTGCAACTATGCTTCCAGTTTCCATTCCGGACTCTAACCCAGGATTTGCCCCTCCATCGCGGAATAAAATCTCTGATGGAACTCCCCCCTTTTCTCCTACTGCTGCTTGCTTTAATAAGTATGGGGATCTGGTTTATGCAGGGAACTCCAAAGGAGAAATACTCCTAATAGATTATAAAAGTGTCCAAGTGCTTGCAATGGTTCCTACTTCTGGAGGTTCCGTGATTAAGAATATAGTATTCAGCAGGAATGGTCAGTATCTGCTTACAAATTCAAATGATAGAACAATAAGGATTTACGAGAACCTTCTTCCCTTGAAAGATGGACTCAAAGCCCTAAATGGCTTGACTGCTCTTGATGGACTAGATGATGCTGAGAAGTTGAAAGTTGTTGGATCAAAATGCTTAACACTATTCCGTGAGTTTCAAGATACCATCACAAAGATGCATTGGAAAGCACCTTGTTTCAGTGGTGATGGTGAGTGGGTAATTGGTGGTTCTGCAAGCAAAGGAGAACACAAGATTTACATATGGGACAGGGCTGGGCATCTTGTGAAAATTCTTGAAGGGCCAAAGGAAGCCTTGATCGATTTAGTGTGGCATCCTGTTCATCCCATTGTTGTCTCTGTTTCCCTGACGGGCTTGGTTTATATTTGGGCTAAAGATTACACTGAGAACTGGAGTGCATTTGCTCCTGATTTTAAGGAGCTCGAGGAAAATGAGGAGTACATAGAACGAGAAGATGAATTTGATCTGATACCCGAAACTGAAAAGGCCAAAGAATCTAATGTTAATGAAGATGATGAAGTTGATATCGTGACAGTGGACAAGGATTCAGCTTTTAGTGATTCAGATATGTCACAGGAAGAGCTATGCTTCTTGCCAGCAATTCCTTTGCCTGATGCTCCTGAGCAACAAGACAAGTGCTTAGAAAGTTCATCAAAGTTGGTGGAAAGTAATAATTCTGGCTCCCCTCTTTCAGAAGAGGGCAGACCTAATGGTCGTGCAATGAATCATGCATCCAGTCCGCTTGAAGAGGATCCTGGAGCAACACGCTTGAAAAGAAAACGGAAGCCTTCTGAAAAGTGGTTGGACTTGCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
F-box F-box-like WD40

Protein Analysis

511

Amino Acids

56.44

Weight (kDa)

4.87

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 11 - 111 6.4e-07 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 25 - 105 2e-11 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 25 - 104 8.3e-10 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 25 - 100 5e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 26 - 118 5e-12 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 26 - 104 2.9e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 26 - 110 4.8e-06 WDR36/Utp21 second beta-propeller domain
EIF3I PF24805 29 - 244 1.4e-07 EIF3I
Beta-prop_EML_2 PF23414 177 - 244 1.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AasI GACNNNNNNGTC 1 cut(s) 1428
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 12
AccII CGCG 2 cut(s) 243, 490
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 2 cut(s) 490, 1457
AclWI GGATC 4 cut(s) 564, 832, 1463, 1476
AcsI RAATTY 3 cut(s) 700, 987, 1175
AfaI GTAC 3 cut(s) 14, 106, 1157
AfiI CCNNNNNNNGG 2 cut(s) 29, 641
AgsI TTSAA 9 cut(s) 94, 421, 705, 748, 814, 857, 995, 1463, 1489
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 4 cut(s) 161, 352, 469, 1471
AluBI AGCT 7 cut(s) 181, 260, 341, 1138, 1268, 1300, 1531
AluI AGCT 7 cut(s) 181, 260, 341, 1138, 1268, 1300, 1531
Alw21I GWGCWC 3 cut(s) 128, 183, 1140
Alw26I GTCTC 2 cut(s) 152, 1057
AlwI GGATC 4 cut(s) 564, 832, 1463, 1476
AlwNI CAGNNNCTG 1 cut(s) 691
Ama87I CYCGRG 1 cut(s) 1139
Aor13HI TCCGGA 1 cut(s) 457
AoxI GGCC 2 cut(s) 998, 1203
ApeKI GCWGC 5 cut(s) 116, 203, 257, 533, 1528
ApoI RAATTY 3 cut(s) 700, 987, 1175
Asp718I GGTACC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 998
AsuHPI GGTGA 3 cut(s) 308, 914, 920
AvaI CYCGRG 1 cut(s) 1139
BamHI GGATCC 1 cut(s) 1468
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 2 cut(s) 183, 1140
Bbv12I GWGCWC 3 cut(s) 128, 183, 1140
BbvI GCAGC 4 cut(s) 103, 190, 269, 520
BccI CCATC 8 cut(s) 125, 376, 493, 500, 746, 782, 872, 899
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 4 cut(s) 163, 354, 471, 1473
BcoDI GTCTC 2 cut(s) 152, 1057
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 2 cut(s) 213, 794
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 5 cut(s) 117, 204, 258, 534, 1529
BlsI GCNGC 5 cut(s) 118, 205, 259, 535, 1530
Bme1390I CCNGG 4 cut(s) 163, 354, 471, 1473
BmeT110I CYCGRG 1 cut(s) 1139
BmgT120I GGNCC 1 cut(s) 998
BmiI GGNNCC 6 cut(s) 14, 358, 633, 649, 1399, 1470
BmrFI CCNGG 4 cut(s) 163, 354, 471, 1473
BmsI GCATC 6 cut(s) 790, 864, 985, 1039, 1321, 1457
BplI GAGNNNNNCTC 2 cut(s) 576, 608
BpmI CTGGAG 3 cut(s) 663, 1129, 1494
Bpu10I CCTNAGC 2 cut(s) 174, 1338
Bsa29I ATCGAT 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 100, 162, 469
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 636, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 641
Bse1I ACTGG 3 cut(s) 446, 1112, 1452
Bse3DI GCAATG 4 cut(s) 84, 168, 633, 1443
BseAI TCCGGA 1 cut(s) 457
BseBI CCWGG 4 cut(s) 163, 354, 471, 1473
BseCI ATCGAT 1 cut(s) 1017
BseDI CCNNGG 3 cut(s) 100, 162, 469
BseGI GGATG 5 cut(s) 289, 349, 1030, 1039, 1448
BseLI CCNNNNNNNGG 2 cut(s) 29, 641
BseMI GCAATG 4 cut(s) 84, 168, 633, 1443
BseMII CTCAG 3 cut(s) 795, 1092, 1329
BseNI ACTGG 3 cut(s) 446, 1112, 1452
BseRI GAGGAG 2 cut(s) 68, 1166
BseXI GCAGC 4 cut(s) 103, 190, 269, 520
BseYI CCCAGC 2 cut(s) 119, 971
Bsh1236I CGCG 2 cut(s) 243, 490
BshFI GGCC 2 cut(s) 1000, 1205
BshNI GGYRCC 1 cut(s) 12
BshVI ATCGAT 1 cut(s) 1017
BsiHKAI GWGCWC 3 cut(s) 128, 183, 1140
BsiHKCI CYCGRG 1 cut(s) 1139
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 2 cut(s) 29, 641
BsmAI GTCTC 2 cut(s) 152, 1057
BsmFI GGGAC 1 cut(s) 977
BsnI GGCC 2 cut(s) 1000, 1205
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 1139
Bsp1286I GDGCHC 3 cut(s) 128, 183, 1140
Bsp13I TCCGGA 1 cut(s) 457
Bsp143I GATC 5 cut(s) 556, 824, 1014, 1180, 1468
BspACI CCGC 2 cut(s) 490, 1457
BspANI GGCC 2 cut(s) 1000, 1205
BspCNI CTCAG 3 cut(s) 796, 1093, 1330
BspDI ATCGAT 1 cut(s) 1017
BspEI TCCGGA 1 cut(s) 457
BspFNI CGCG 2 cut(s) 243, 490
BspLI GGNNCC 6 cut(s) 14, 358, 633, 649, 1399, 1470
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 4 cut(s) 564, 832, 1463, 1476
BspQI GCTCTTC 1 cut(s) 1290
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 4 cut(s) 84, 168, 633, 1443
BsrI ACTGG 3 cut(s) 446, 1112, 1452
BssECI CCNNGG 3 cut(s) 100, 162, 469
BssMI GATC 5 cut(s) 556, 824, 1014, 1180, 1468
Bst2UI CCWGG 4 cut(s) 163, 354, 471, 1473
Bst4CI ACNGT 2 cut(s) 197, 1252
Bst6I CTCTTC 4 cut(s) 114, 1290, 1407, 1458
BstC8I GCNNGC 5 cut(s) 385, 538, 624, 934, 1314
BstDEI CTNAG 5 cut(s) 174, 804, 1101, 1338, 1357
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 5 cut(s) 289, 349, 1030, 1039, 1448
BstFNI CGCG 2 cut(s) 243, 490
BstKTI GATC 5 cut(s) 559, 827, 1017, 1183, 1471
BstMAI GTCTC 2 cut(s) 152, 1057
BstMBI GATC 5 cut(s) 556, 824, 1014, 1180, 1468
BstNI CCWGG 4 cut(s) 163, 354, 471, 1473
BstSCI CCNGG 4 cut(s) 161, 352, 469, 1471
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 2 cut(s) 243, 490
BstV1I GCAGC 4 cut(s) 103, 190, 269, 520
BstX2I RGATCY 2 cut(s) 556, 1468
BstYI RGATCY 2 cut(s) 556, 1468
Bsu15I ATCGAT 1 cut(s) 1017
BsuRI GGCC 2 cut(s) 1000, 1205
BsuTUI ATCGAT 1 cut(s) 1017
BtgI CCRYGG 1 cut(s) 100
BtgZI GCGATG 2 cut(s) 224, 471
BtsCI GGATG 5 cut(s) 289, 349, 1030, 1039, 1448
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 5 cut(s) 23, 298, 904, 1098, 1257
Cac8I GCNNGC 5 cut(s) 385, 538, 624, 934, 1314
CaiI CAGNNNCTG 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 998
ClaI ATCGAT 1 cut(s) 1017
Csp6I GTAC 3 cut(s) 13, 105, 1156
CspCI CAANNNNNGTGG 4 cut(s) 82, 117, 1359, 1394
CviAII CATG 2 cut(s) 68, 1445
CviQI GTAC 3 cut(s) 13, 105, 1156
DdeI CTNAG 5 cut(s) 174, 804, 1101, 1338, 1357
DpnI GATC 5 cut(s) 558, 826, 1016, 1182, 1470
DpnII GATC 5 cut(s) 556, 824, 1014, 1180, 1468
DrdI GACNNNNNNGTC 1 cut(s) 1428
DseDI GACNNNNNNGTC 1 cut(s) 1428
Eam1104I CTCTTC 4 cut(s) 114, 1290, 1407, 1458
EarI CTCTTC 4 cut(s) 114, 1290, 1407, 1458
Ecl136II GAGCTC 2 cut(s) 181, 1138
Eco24I GRGCYC 2 cut(s) 183, 1140
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 1243
Eco53kI GAGCTC 2 cut(s) 181, 1138
Eco88I CYCGRG 1 cut(s) 1139
EcoICRI GAGCTC 2 cut(s) 181, 1138
EcoRII CCWGG 4 cut(s) 161, 352, 469, 1471
EcoRV GATATC 1 cut(s) 1243
EcoT22I ATGCAT 3 cut(s) 86, 879, 1450
EcoT38I GRGCYC 2 cut(s) 183, 1140
FaeI CATG 2 cut(s) 71, 1448
FalI AAGNNNNNCTT 2 cut(s) 995, 1027
FaqI GGGAC 1 cut(s) 977
FatI CATG 2 cut(s) 67, 1444
FauNDI CATATG 1 cut(s) 959
Fnu4HI GCNGC 5 cut(s) 117, 204, 258, 534, 1529
FokI GGATG 5 cut(s) 296, 336, 1017, 1026, 1435
FriOI GRGCYC 2 cut(s) 183, 1140
Fsp4HI GCNGC 5 cut(s) 117, 204, 258, 534, 1529
FspBI CTAG 2 cut(s) 213, 794
GluI GCNGC 5 cut(s) 117, 204, 258, 534, 1529
GsaI CCCAGC 2 cut(s) 123, 975
GsuI CTGGAG 3 cut(s) 663, 1129, 1494
HaeIII GGCC 2 cut(s) 1000, 1205
HapII CCGG 1 cut(s) 458
Hin1II CATG 2 cut(s) 71, 1448
HincII GTYRAC 2 cut(s) 273, 415
HindII GTYRAC 2 cut(s) 273, 415
HinfI GANTC 6 cut(s) 461, 756, 1211, 1262, 1277, 1441
HpaII CCGG 1 cut(s) 458
HphI GGTGA 3 cut(s) 308, 914, 920
Hpy166II GTNNAC 3 cut(s) 273, 415, 1255
Hpy188I TCNGA 6 cut(s) 130, 505, 1185, 1282, 1411, 1510
Hpy188III TCNNGA 8 cut(s) 458, 642, 785, 857, 992, 1124, 1246, 1337
Hpy8I GTNNAC 3 cut(s) 273, 415, 1255
HpyAV CCTTC 4 cut(s) 100, 746, 989, 1515
HpyCH4III ACNGT 2 cut(s) 197, 1252
HpyF3I CTNAG 5 cut(s) 174, 804, 1101, 1338, 1357
Hsp92II CATG 2 cut(s) 71, 1448
Kpn2I TCCGGA 1 cut(s) 457
KpnI GGTACC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 556, 824, 1014, 1180, 1468
LguI GCTCTTC 1 cut(s) 1290
LmnI GCTCC 8 cut(s) 178, 186, 406, 1126, 1135, 1339, 1403, 1475
Lsp1109I GCAGC 4 cut(s) 103, 190, 269, 520
LweI GCATC 6 cut(s) 790, 864, 985, 1039, 1321, 1457
MaeI CTAG 2 cut(s) 213, 794
MaeIII GTNAC 3 cut(s) 345, 1246, 1287
MalI GATC 5 cut(s) 558, 826, 1016, 1182, 1470
MboI GATC 5 cut(s) 556, 824, 1014, 1180, 1468
MboII GAAGA 8 cut(s) 101, 313, 731, 1181, 1238, 1307, 1424, 1475
MflI RGATCY 2 cut(s) 556, 1468
MhlI GDGCHC 3 cut(s) 128, 183, 1140
MluCI AATT 7 cut(s) 136, 700, 918, 987, 1175, 1317, 1390
MlyI GAGTC 2 cut(s) 455, 750
MmeI TCCRAC 2 cut(s) 802, 1500
Mph1103I ATGCAT 3 cut(s) 86, 879, 1450
MroI TCCGGA 1 cut(s) 457
MseI TTAA 5 cut(s) 543, 657, 836, 1131, 1221
MslI CAYNNNNRTG 1 cut(s) 872
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 4 cut(s) 163, 354, 471, 1473
MvaI CCWGG 4 cut(s) 163, 354, 471, 1473
MvnI CGCG 2 cut(s) 243, 490
NdeI CATATG 1 cut(s) 959
NdeII GATC 5 cut(s) 556, 824, 1014, 1180, 1468
NlaIII CATG 2 cut(s) 71, 1448
NlaIV GGNNCC 6 cut(s) 14, 358, 633, 649, 1399, 1470
NmuCI GTSAC 2 cut(s) 1246, 1287
NsiI ATGCAT 3 cut(s) 86, 879, 1450
PaeR7I CTCGAG 1 cut(s) 1139
PciSI GCTCTTC 1 cut(s) 1290
PfeI GAWTC 4 cut(s) 1211, 1262, 1277, 1441
PfoI TCCNGGA 1 cut(s) 1471
PkrI GCNGC 5 cut(s) 118, 205, 259, 535, 1530
PleI GAGTC 2 cut(s) 455, 750
PpsI GAGTC 2 cut(s) 455, 750
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 2 cut(s) 183, 1140
Psp6I CCWGG 4 cut(s) 161, 352, 469, 1471
PspFI CCCAGC 2 cut(s) 119, 971
PspGI CCWGG 4 cut(s) 161, 352, 469, 1471
PspN4I GGNNCC 6 cut(s) 14, 358, 633, 649, 1399, 1470
PspPI GGNCC 1 cut(s) 998
PspXI VCTCGAGB 1 cut(s) 1139
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 556, 1468
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 14, 106, 1157
RsaNI GTAC 3 cut(s) 13, 105, 1156
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 2 cut(s) 183, 1140
SapI GCTCTTC 1 cut(s) 1290
SaqAI TTAA 5 cut(s) 543, 657, 836, 1131, 1221
SatI GCNGC 5 cut(s) 117, 204, 258, 534, 1529
Sau3AI GATC 5 cut(s) 556, 824, 1014, 1180, 1468
Sau96I GGNCC 1 cut(s) 998
SchI GAGTC 2 cut(s) 455, 750
ScrFI CCNGG 4 cut(s) 163, 354, 471, 1473
SduI GDGCHC 3 cut(s) 128, 183, 1140
SfaNI GCATC 6 cut(s) 790, 864, 985, 1039, 1321, 1457
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 1139
SlaI CTCGAG 1 cut(s) 1139
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 1139
SmoI CTYRAG 1 cut(s) 1139
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 7 cut(s) 136, 700, 918, 987, 1175, 1317, 1390
SsiI CCGC 2 cut(s) 490, 1457
SspMI CTAG 2 cut(s) 213, 794
SstI GAGCTC 2 cut(s) 183, 1140
StyD4I CCNGG 4 cut(s) 161, 352, 469, 1471
TaaI ACNGT 2 cut(s) 197, 1252
TaqI TCGA 2 cut(s) 1017, 1140
TasI AATT 7 cut(s) 136, 700, 918, 987, 1175, 1317, 1390
TatI WGTACW 1 cut(s) 1155
TfiI GAWTC 4 cut(s) 1211, 1262, 1277, 1441
Tru1I TTAA 5 cut(s) 543, 657, 836, 1131, 1221
Tru9I TTAA 5 cut(s) 543, 657, 836, 1131, 1221
TscAI CASTG 5 cut(s) 30, 298, 904, 1105, 1257
TseFI GTSAC 2 cut(s) 1246, 1287
TseI GCWGC 5 cut(s) 116, 203, 257, 533, 1528
Tsp45I GTSAC 2 cut(s) 1246, 1287
TspDTI ATGAA 7 cut(s) 92, 1028, 1188, 1239, 1248, 1356, 1454
TspGWI ACGGA 4 cut(s) 173, 640, 836, 1513
TspRI CASTG 5 cut(s) 30, 298, 904, 1105, 1257
XapI RAATTY 3 cut(s) 700, 987, 1175
XhoI CTCGAG 1 cut(s) 1139
XspI CTAG 2 cut(s) 213, 794
Zsp2I ATGCAT 3 cut(s) 86, 879, 1450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.