Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003058

Physical Location & Seq

Genomic Coordinates Forward (+)

25171182 .. 25172610

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATAGGACAGTGTTTGCTGGATCAAGCAATGGATATGTCATATGTGTACGGTTGGGACCTGAGGACATGTAGACTTTTGTGGGAAACGAGAGTGAGTTGGGGTGCTGTGTGTTCAATGCAGCACCGGAGGAATGATGCATCAACTTTGGTTGTGGGTGGAATGGATGGTGTAATTCATCTAGTGGATCAGAACACAGGGAAAGTAGTTACATTGTCTTGGACACCAGCGACTGTGTACTGCCGATCGAGTTCTAAACCTGCTTCAAGTTCAAGTGGTGGTTGTTATCAAAACATGGTAATTCAGAGATTGAGAGGAAAAAGGATTTCACCTGATGCCGACGTTGTCAGCATTCCTGCACCTCCCATCACCTGCTTGGCAGTGGGGATGAAGAAGCTGGTTCATCAAAACATGGCTCTTTCAATGTCGGATCTGGTTATCATAAGATTTATGAATCTGGGTCCAAACCATCTCTGTGATAACTCGTTGTTCTCACATTATTGCTCCTGCAGTTTGGATATTGATAACACTAATGCTCTCCCCAAGACGGTGCATTTTCTTTGGGTGGCTTTTTCACTCTGGACAATCTGGAAGGCAAGAAGTGAAGTTGTCTATGGACATCCGTCTCCTAAACCTATTGGTAAAGCGCACAGAATTGGAGCAGCTGTTGCAGAGTTTCTTGGCAGTTCCTTAGTGGCTCCATATACAGGTGTCCCACAAGCTGATATCATCGGTTCTGAAATTGGAGACTTGGTGTGCCCCAAACACGGAATGTCTGGGAAATCTACCCTCTCATCAAAGAAATCCGATGGTTTCAGAGTGTGCTGGAATTTGATAAAGATGAGTTCTAATGCTTTGGCTGATTTGCTTGCCAGGCAAGCCGAAAGGAAGATGGTTCTTGGAAATTGGGTAATGCACCCTCCATCTGATTTTCTCAAAGTTCTGAGGAGTAATGGATTGCCTGCACCTCCTTCTGGTGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

328

Amino Acids

35.77

Weight (kDa)

9.13

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003058)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890
prunus_persica	Prupe.6G122300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0283161
rosa_laevigata	RLG00000012709 RLG00000012841
rosa_multiflora	Rmu_sc0000159.1_g000014
rosa_roxburghii	Rroxscaffold_7G00184310 Rroxscaffold_7G00185720 Rroxscaffold_7G00185730
rosa_rugosa	Rorug06G0151700 Rorug06G0151800 Rorug07G0212900
rosa_samantha	Rh3DG284600 Rh6AG264600 Rh6AG264700 Rh6BG267500 Rh6BG280300 Rh6BG280400 Rh6CG266500 Rh6CG266600 Rh6DG259800 Rh6DG259900 Rh7CG376400
rosa_wichuraiana	Rw6G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	380
Acc36I	ACCTGC	2 cut(s)	268, 380
AccI	GTMKAC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	30, 195, 438
AcsI	RAATTY	1 cut(s)	829
AfaI	GTAC	2 cut(s)	50, 239
AfiI	CCNNNNNNNGG	4 cut(s)	547, 707, 767, 974
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	117, 267, 273, 423
AjnI	CCWGG	1 cut(s)	872
AluBI	AGCT	3 cut(s)	397, 665, 722
AluI	AGCT	3 cut(s)	397, 665, 722
Alw26I	GTCTC	2 cut(s)	630, 741
AlwI	GGATC	3 cut(s)	30, 195, 438
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	121, 662
ApoI	RAATTY	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	58, 461
AsuHPI	GGTGA	2 cut(s)	321, 361
AvaII	GGWCC	2 cut(s)	58, 461
AxyI	CCTNAGG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	133, 674
BccI	CCATC	6 cut(s)	161, 374, 477, 803, 886, 931
BciT130I	CCWGG	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	630, 741
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	508
BfuAI	ACCTGC	2 cut(s)	268, 380
BisI	GCNGC	2 cut(s)	122, 663
BlsI	GCNGC	2 cut(s)	123, 664
Bme1390I	CCNGG	1 cut(s)	874
Bme18I	GGWCC	2 cut(s)	58, 461
BmgT120I	GGNCC	2 cut(s)	58, 461
BmiI	GGNNCC	3 cut(s)	59, 462, 699
BmrFI	CCNGG	1 cut(s)	874
BmsI	GCATC	3 cut(s)	127, 149, 325
BoxI	GACNNNNGTC	1 cut(s)	622
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	4 cut(s)	651, 681, 738, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	547, 707, 767, 974
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	874
BseGI	GGATG	3 cut(s)	172, 393, 619
BseLI	CCNNNNNNNGG	4 cut(s)	547, 707, 767, 974
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	53, 935
BseRI	GAGGAG	1 cut(s)	961
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	2 cut(s)	133, 674
BsgI	GTGCAG	2 cut(s)	342, 948
Bsh1285I	CGRYCG	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	71, 698
BslI	CCNNNNNNNGG	4 cut(s)	547, 707, 767, 974
BsmAI	GTCTC	2 cut(s)	630, 741
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	2 cut(s)	71, 698
BsmI	GAATGC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	4 cut(s)	22, 187, 245, 430
BspCNI	CTCAG	2 cut(s)	54, 936
BspLI	GGNNCC	3 cut(s)	59, 462, 699
BspMAI	CTGCAG	1 cut(s)	512
BspMI	ACCTGC	2 cut(s)	268, 380
BspPI	GGATC	3 cut(s)	30, 195, 438
BsrDI	GCAATG	1 cut(s)	36
BssMI	GATC	4 cut(s)	22, 187, 245, 430
Bst2UI	CCWGG	1 cut(s)	874
Bst4CI	ACNGT	4 cut(s)	12, 53, 235, 550
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	870, 879, 963
BstDEI	CTNAG	3 cut(s)	62, 691, 944
BstF5I	GGATG	3 cut(s)	172, 393, 619
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	4 cut(s)	25, 190, 248, 433
BstMAI	GTCTC	2 cut(s)	630, 741
BstMBI	GATC	4 cut(s)	22, 187, 245, 430
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	3 cut(s)	668, 874, 878
BstNI	CCWGG	1 cut(s)	874
BstNSI	RCATGY	1 cut(s)	72
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	872
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	761
BstV1I	GCAGC	2 cut(s)	133, 674
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	172, 393, 619
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	17, 387
BveI	ACCTGC	2 cut(s)	268, 380
Cac8I	GCNNGC	3 cut(s)	870, 879, 963
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	58, 461
Csp6I	GTAC	2 cut(s)	49, 238
CviAII	CATG	3 cut(s)	69, 295, 412
CviJI	RGCY	8 cut(s)	397, 416, 569, 665, 698, 722, 860, 881
CviKI_1	RGCY	8 cut(s)	397, 416, 569, 665, 698, 722, 860, 881
CviQI	GTAC	2 cut(s)	49, 238
DdeI	CTNAG	3 cut(s)	62, 691, 944
DpnI	GATC	4 cut(s)	24, 189, 247, 432
DpnII	GATC	4 cut(s)	22, 187, 245, 430
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	58, 461
Eco81I	CCTNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	727
EcoT22I	ATGCAT	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	3 cut(s)	72, 298, 415
FaqI	GGGAC	2 cut(s)	71, 698
FatI	CATG	3 cut(s)	68, 294, 411
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	122, 663
FokI	GGATG	3 cut(s)	179, 400, 606
Fsp4HI	GCNGC	2 cut(s)	122, 663
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	2 cut(s)	122, 663
HapII	CCGG	1 cut(s)	127
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	72, 298, 415
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	2 cut(s)	321, 361
Hpy166II	GTNNAC	3 cut(s)	49, 74, 238
Hpy188I	TCNGA	8 cut(s)	192, 306, 430, 739, 808, 818, 928, 945
Hpy188III	TCNNGA	2 cut(s)	580, 589
Hpy8I	GTNNAC	3 cut(s)	49, 74, 238
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	586, 981
HpyCH4III	ACNGT	4 cut(s)	12, 53, 235, 550
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	8 cut(s)	121, 140, 359, 510, 553, 671, 916, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	668, 874, 878
HpyF3I	CTNAG	3 cut(s)	62, 691, 944
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	72, 298, 415
HspAI	GCGC	1 cut(s)	647
Kzo9I	GATC	4 cut(s)	22, 187, 245, 430
LmnI	GCTCC	3 cut(s)	509, 659, 703
Lsp1109I	GCAGC	2 cut(s)	133, 674
LweI	GCATC	3 cut(s)	127, 149, 325
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	4 cut(s)	24, 189, 247, 432
MboI	GATC	4 cut(s)	22, 187, 245, 430
MboII	GAAGA	2 cut(s)	403, 901
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	761
MluCI	AATT	6 cut(s)	174, 300, 654, 741, 829, 904
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	8 cut(s)	57, 123, 308, 372, 800, 930, 939, 978
Mph1103I	ATGCAT	1 cut(s)	142
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	874
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	874
MwoI	GCNNNNNNNGC	3 cut(s)	668, 874, 878
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	4 cut(s)	22, 187, 245, 430
NlaIII	CATG	3 cut(s)	72, 298, 415
NlaIV	GGNNCC	3 cut(s)	59, 462, 699
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	68
PctI	GAATGC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	123, 664
Ple19I	CGATCG	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	58
PscI	ACATGT	1 cut(s)	68
PshAI	GACNNNNGTC	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	3 cut(s)	59, 462, 699
PspPI	GGNCC	2 cut(s)	58, 461
PspPPI	RGGWCCY	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	2 cut(s)	50, 239
RsaNI	GTAC	2 cut(s)	49, 238
RseI	CAYNNNNRTG	1 cut(s)	474
SatI	GCNGC	2 cut(s)	122, 663
Sau3AI	GATC	4 cut(s)	22, 187, 245, 430
Sau96I	GGNCC	2 cut(s)	58, 461
ScrFI	CCNGG	1 cut(s)	874
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	3 cut(s)	127, 149, 325
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	2 cut(s)	58, 461
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	6 cut(s)	174, 300, 654, 741, 829, 904
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	872
TaaI	ACNGT	4 cut(s)	12, 53, 235, 550
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	248
TasI	AATT	6 cut(s)	174, 300, 654, 741, 829, 904
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	454
TscAI	CASTG	2 cut(s)	17, 387
TseI	GCWGC	2 cut(s)	121, 662
TspDTI	ATGAA	4 cut(s)	167, 392, 404, 467
TspGWI	ACGGA	2 cut(s)	612, 783
TspRI	CASTG	2 cut(s)	17, 387
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	58, 461
XapI	RAATTY	1 cut(s)	829
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.