RchiOBHm_Chr6g0283161

F-box WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
46326598 .. 46327605
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25387

Sequence Viewer

Length: 1008 bp
ATGTCTTCTTGTTTGAAACACAAATCACATTCCTTCCCGGCCGGGAGAGATTTTGCTCTGGCCAGCAACAACAACAAAAGGCCGAAAAGAGGACCTCCGCCAAACAATGCTCTTGACCATGACGTCCTTTCCGCAATCTTCTCTTTGCTCGACTGCTGCCAAGACCTCGTCAGTTGTTCCTTGGTTTGCAAAACCTGGAGGACCGCCATCGCCAAATGCAAGTGTTTCGAAGCGCTTTATTACAAGCAGTGGCAAATGGGTCTTGTGAGGGGTCTTTGTTTGGAGGAGATGGCCGGTGTGACTCATAGACTTGCATTGCTTCAAAGCCGTTGGATTAATGTTGATCACTGGAAGGGTCACTCTGTTAATATTGATCAATGCCGACACAAGGATGGGTTGCTTCTGACTGGCAGCAGCAGGAAGAAGTTCATGCATCTGTGGTCACCGGAAGAAAGCCGTAAATGTGTGTATAAATTTCAAGGAGAATATCGAGTTCCAGTAGACTATGGCCCTTTGGTTGATTTTGACTTTGATGAGAGCAAGATTGTTGGCTTGGTCGGCTCAAAGAATAGTCGAATATGCATATGGAGGCGCAGTGGGATGACTAGGATATTAAACCCCTTTAAGTGCAAGGGTACCTTTCCGAAGGGTTTATGCATGAGCTACTGTGATCCAGAGGCTGTGGTTGGATGTGCTGACGGCACTGCTCGAGTGTTTGACATGTACAGTAGCCAATGTTCTCAAATTCTTAGAATGCACGACCCTGAGGTGCCAGTGACATGCCTAGGGTTGAGTGATGAAGGCAGTCGGTTGTCCATTCTTGCTGGTGGTGGTTCTTCTATCACAGTTTCCTCTGTACTTTTACCTGATCATGAGTTTGCAGCAAAATTGCATATAGCAGGCGAGATAAAGACTTTGAGTTACAACCCTTGCGGCAATGAGAGGACAGTGTTTGCTGGATCAAGCAATGGATATGTGTACGGTTGGGACCTGAGGACATGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

335

Amino Acids

37.34

Weight (kDa)

8.72

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 38 - 75 6.1e-07 F-box domain
F-box-like PF12937 40 - 71 4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AatII GACGTC 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 635
AccB1I GGYRCC 2 cut(s) 635, 769
AccI GTMKAC 1 cut(s) 501
AciI CCGC 4 cut(s) 98, 132, 204, 933
AclWI GGATC 2 cut(s) 665, 967
AcoI YGGCCR 3 cut(s) 39, 60, 291
AcsI RAATTY 2 cut(s) 473, 744
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 4 cut(s) 637, 725, 858, 980
AfeI AGCGCT 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 89, 388
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 3 cut(s) 16, 323, 479
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 1 cut(s) 663
AluI AGCT 1 cut(s) 663
AlwI GGATC 2 cut(s) 665, 967
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 708
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 5 cut(s) 39, 60, 80, 291, 508
ApeKI GCWGC 4 cut(s) 156, 411, 414, 881
ApoI RAATTY 2 cut(s) 473, 744
AseI ATTAAT 1 cut(s) 336
Asp700I GAANNNNTTC 1 cut(s) 425
Asp718I GGTACC 1 cut(s) 635
AspA2I CCTAGG 1 cut(s) 784
AspLEI GCGC 2 cut(s) 235, 594
AspS9I GGNCC 4 cut(s) 92, 201, 509, 988
AsuC2I CCSGG 2 cut(s) 38, 43
AsuHPI GGTGA 1 cut(s) 435
AsuII TTCGAA 1 cut(s) 228
AvaI CYCGRG 1 cut(s) 708
AvaII GGWCC 3 cut(s) 92, 201, 988
AvrII CCTAGG 1 cut(s) 784
AxyI CCTNAGG 2 cut(s) 765, 992
BalI TGGCCA 1 cut(s) 62
BanI GGYRCC 2 cut(s) 635, 769
BbvI GCAGC 4 cut(s) 143, 423, 426, 893
BccI CCATC 3 cut(s) 215, 283, 386
BceAI ACGGC 3 cut(s) 312, 441, 715
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 3 cut(s) 343, 373, 868
BcnI CCSGG 2 cut(s) 38, 43
BfaI CTAG 2 cut(s) 606, 785
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 5 cut(s) 157, 412, 415, 882, 934
BlnI CCTAGG 1 cut(s) 784
BlsI GCNGC 5 cut(s) 158, 413, 416, 883, 935
Bme1390I CCNGG 3 cut(s) 38, 43, 196
Bme18I GGWCC 3 cut(s) 92, 201, 988
BmeT110I CYCGRG 1 cut(s) 708
BmgT120I GGNCC 4 cut(s) 92, 201, 509, 988
BmiI GGNNCC 3 cut(s) 637, 771, 989
BmrFI CCNGG 3 cut(s) 38, 43, 196
BmsI GCATC 1 cut(s) 442
BpmI CTGGAG 1 cut(s) 217
Bpu14I TTCGAA 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 38, 43
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 180, 784
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 388
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 4 cut(s) 353, 412, 497, 773
Bse21I CCTNAGG 2 cut(s) 765, 992
Bse3DI GCAATG 3 cut(s) 314, 943, 973
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 180, 784
BseGI GGATG 3 cut(s) 397, 606, 695
BseLI CCNNNNNNNGG 2 cut(s) 89, 388
BseMI GCAATG 3 cut(s) 314, 943, 973
BseMII CTCAG 2 cut(s) 756, 983
BseNI ACTGG 4 cut(s) 353, 412, 497, 773
BseRI GAGGAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 4 cut(s) 143, 423, 426, 893
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 5 cut(s) 41, 62, 82, 293, 510
BshNI GGYRCC 2 cut(s) 635, 769
BsiEI CGRYCG 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 4 cut(s) 38, 42, 294, 446
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 2 cut(s) 89, 388
BsmFI GGGAC 1 cut(s) 1001
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 5 cut(s) 41, 62, 82, 293, 510
BsoBI CYCGRG 1 cut(s) 708
Bsp119I TTCGAA 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 5 cut(s) 343, 373, 670, 868, 959
BspACI CCGC 4 cut(s) 98, 132, 204, 933
BspANI GGCC 5 cut(s) 41, 62, 82, 293, 510
BspCNI CTCAG 2 cut(s) 757, 984
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 637, 771, 989
BspPI GGATC 2 cut(s) 665, 967
BspT104I TTCGAA 1 cut(s) 228
BspT107I GGYRCC 2 cut(s) 635, 769
BsrDI GCAATG 3 cut(s) 314, 943, 973
BsrFI RCCGGY 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 4 cut(s) 353, 412, 497, 773
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 180, 784
BssMI GATC 5 cut(s) 343, 373, 670, 868, 959
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 180, 784
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 5 cut(s) 668, 728, 847, 949, 983
BstACI GRCGYC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 723
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 64, 901
BstDEI CTNAG 3 cut(s) 749, 765, 992
BstEII GGTNACC 1 cut(s) 441
BstF5I GGATG 3 cut(s) 397, 606, 695
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 235, 594
BstKTI GATC 5 cut(s) 346, 376, 673, 871, 962
BstMBI GATC 5 cut(s) 343, 373, 670, 868, 959
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 4 cut(s) 724, 783, 1002, 1006
BstPI GGTNACC 1 cut(s) 441
BstSCI CCNGG 3 cut(s) 36, 41, 194
BstV1I GCAGC 4 cut(s) 143, 423, 426, 893
BstZI CGGCCG 1 cut(s) 39
Bsu36I CCTNAGG 2 cut(s) 765, 992
BsuRI GGCC 5 cut(s) 41, 62, 82, 293, 510
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 397, 606, 695
BtsI GCAGTG 3 cut(s) 254, 601, 702
BtsIMutI CAGTG 6 cut(s) 254, 346, 601, 702, 780, 954
Cac8I GCNNGC 2 cut(s) 64, 901
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 871
CfoI GCGC 2 cut(s) 235, 594
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 4 cut(s) 92, 201, 509, 988
Csp6I GTAC 4 cut(s) 636, 724, 857, 979
CviAII CATG 8 cut(s) 119, 430, 658, 721, 780, 872, 999, 1003
CviQI GTAC 4 cut(s) 636, 724, 857, 979
DdeI CTNAG 3 cut(s) 749, 765, 992
DpnI GATC 5 cut(s) 345, 375, 672, 870, 961
DpnII GATC 5 cut(s) 343, 373, 670, 868, 959
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 3 cut(s) 39, 60, 291
EagI CGGCCG 1 cut(s) 39
EciI GGCGGA 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 180, 784
Eco47I GGWCC 3 cut(s) 92, 201, 988
Eco47III AGCGCT 1 cut(s) 234
Eco52I CGGCCG 1 cut(s) 39
Eco81I CCTNAGG 2 cut(s) 765, 992
Eco88I CYCGRG 1 cut(s) 708
Eco91I GGTNACC 1 cut(s) 441
EcoO109I RGGNCCY 2 cut(s) 92, 988
EcoO65I GGTNACC 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 180, 784
EcoT22I ATGCAT 4 cut(s) 435, 584, 659, 1004
ErhI CCWWGG 2 cut(s) 180, 784
FaeI CATG 8 cut(s) 122, 433, 661, 724, 783, 875, 1002, 1006
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 1 cut(s) 1001
FatI CATG 8 cut(s) 118, 429, 657, 720, 779, 871, 998, 1002
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 3 cut(s) 343, 373, 868
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 5 cut(s) 157, 412, 415, 882, 934
FokI GGATG 3 cut(s) 404, 613, 702
Fsp4HI GCNGC 5 cut(s) 157, 412, 415, 882, 934
FspBI CTAG 2 cut(s) 606, 785
GlaI GCGC 2 cut(s) 234, 593
GluI GCNGC 5 cut(s) 157, 412, 415, 882, 934
GsuI CTGGAG 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 5 cut(s) 41, 62, 82, 293, 510
HapII CCGG 4 cut(s) 38, 42, 294, 446
HhaI GCGC 2 cut(s) 235, 594
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 8 cut(s) 122, 433, 661, 724, 783, 875, 1002, 1006
Hin6I GCGC 2 cut(s) 233, 592
HinP1I GCGC 2 cut(s) 233, 592
HinfI GANTC 1 cut(s) 301
HpaII CCGG 4 cut(s) 38, 42, 294, 446
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 2 cut(s) 502, 979
Hpy188I TCNGA 2 cut(s) 405, 645
Hpy188III TCNNGA 3 cut(s) 113, 674, 872
Hpy8I GTNNAC 2 cut(s) 502, 979
HpyAV CCTTC 4 cut(s) 43, 346, 640, 794
HpyCH4III ACNGT 5 cut(s) 668, 728, 847, 949, 983
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 3 cut(s) 749, 765, 992
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 8 cut(s) 122, 433, 661, 724, 783, 875, 1002, 1006
HspAI GCGC 2 cut(s) 233, 592
KpnI GGTACC 1 cut(s) 639
Ksp22I TGATCA 3 cut(s) 343, 373, 868
Kzo9I GATC 5 cut(s) 343, 373, 670, 868, 959
Lsp1109I GCAGC 4 cut(s) 143, 423, 426, 893
LweI GCATC 1 cut(s) 442
MaeI CTAG 2 cut(s) 606, 785
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 5 cut(s) 298, 356, 441, 775, 920
MalI GATC 5 cut(s) 345, 375, 672, 870, 961
MboI GATC 5 cut(s) 343, 373, 670, 868, 959
MboII GAAGA 4 cut(s) 130, 433, 461, 828
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 473, 744, 887
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 2 cut(s) 311, 667
Mox20I TGGCCA 1 cut(s) 62
Mph1103I ATGCAT 4 cut(s) 435, 584, 659, 1004
MroXI GAANNNNTTC 1 cut(s) 425
MscI TGGCCA 1 cut(s) 62
MseI TTAA 4 cut(s) 336, 366, 614, 624
MslI CAYNNNNRTG 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 4 cut(s) 38, 42, 294, 446
MspR9I CCNGG 3 cut(s) 38, 43, 196
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 558
NciI CCSGG 2 cut(s) 38, 43
NdeI CATATG 1 cut(s) 584
NdeII GATC 5 cut(s) 343, 373, 670, 868, 959
NlaIII CATG 8 cut(s) 122, 433, 661, 724, 783, 875, 1002, 1006
NlaIV GGNNCC 3 cut(s) 637, 771, 989
NmuCI GTSAC 4 cut(s) 298, 356, 441, 775
NsiI ATGCAT 4 cut(s) 435, 584, 659, 1004
NspI RCATGY 4 cut(s) 724, 783, 1002, 1006
NspV TTCGAA 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 708
PagI TCATGA 1 cut(s) 871
PciI ACATGT 1 cut(s) 720
PctI GAATGC 1 cut(s) 759
PdmI GAANNNNTTC 1 cut(s) 425
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 5 cut(s) 158, 413, 416, 883, 935
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PpuMI RGGWCCY 2 cut(s) 92, 988
PscI ACATGT 1 cut(s) 720
PshBI ATTAAT 1 cut(s) 336
Psp5II RGGWCCY 2 cut(s) 92, 988
Psp6I CCWGG 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 441
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 3 cut(s) 637, 771, 989
PspPI GGNCC 4 cut(s) 92, 201, 509, 988
PspPPI RGGWCCY 2 cut(s) 92, 988
PspXI VCTCGAGB 1 cut(s) 708
PsrI GAACNNNNNNTAC 2 cut(s) 721, 753
PstNI CAGNNNCTG 1 cut(s) 680
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 4 cut(s) 637, 725, 858, 980
RsaNI GTAC 4 cut(s) 636, 724, 857, 979
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 4 cut(s) 336, 366, 614, 624
SatI GCNGC 5 cut(s) 157, 412, 415, 882, 934
Sau3AI GATC 5 cut(s) 343, 373, 670, 868, 959
Sau96I GGNCC 4 cut(s) 92, 201, 509, 988
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 38, 43, 196
SetI ASST 9 cut(s) 97, 126, 168, 197, 641, 665, 771, 868, 993
SfaNI GCATC 1 cut(s) 442
Sfr274I CTCGAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 228
SinI GGWCC 3 cut(s) 92, 201, 988
SlaI CTCGAG 1 cut(s) 708
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
Sse9I AATT 3 cut(s) 473, 744, 887
SsiI CCGC 4 cut(s) 98, 132, 204, 933
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 606, 785
StyD4I CCNGG 3 cut(s) 36, 41, 194
StyI CCWWGG 2 cut(s) 180, 784
TaaI ACNGT 5 cut(s) 668, 728, 847, 949, 983
TaiI ACGT 1 cut(s) 126
TaqI TCGA 5 cut(s) 150, 228, 490, 574, 709
TasI AATT 3 cut(s) 473, 744, 887
TatI WGTACW 2 cut(s) 723, 856
TauI GCSGC 1 cut(s) 936
Tru1I TTAA 4 cut(s) 336, 366, 614, 624
Tru9I TTAA 4 cut(s) 336, 366, 614, 624
TscAI CASTG 6 cut(s) 254, 353, 601, 709, 780, 954
TseFI GTSAC 4 cut(s) 298, 356, 441, 775
TseI GCWGC 4 cut(s) 156, 411, 414, 881
Tsp45I GTSAC 4 cut(s) 298, 356, 441, 775
TspDTI ATGAA 2 cut(s) 418, 813
TspRI CASTG 6 cut(s) 254, 353, 601, 709, 780, 954
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 3 cut(s) 92, 201, 988
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 2 cut(s) 473, 744
XceI RCATGY 4 cut(s) 724, 783, 1002, 1006
XhoI CTCGAG 1 cut(s) 708
XmaJI CCTAGG 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 2 cut(s) 606, 785
ZraI GACGTC 1 cut(s) 124
Zsp2I ATGCAT 4 cut(s) 435, 584, 659, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.