Rroxscaffold_7G00184310

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003058
Physical Location & Seq
Forward (+)
23520462 .. 23525676
5215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184310.1

Sequence Viewer

Length: 1014 bp
ATGGGGTTGGGTTCGCAATCGGGTCAGCCGGTCGATTGGGGATGGGGTAGTGTGGTGGTGATGGTGATGGTGATGGTTTCTGGGATCGTGTGGTACGGCGTTATGGTGTTGGGGATTGTTCAACACGTTCATCTCCTCTTGGATCGGGAGACTATGGACCGGCTTGATGGCATGTCCTCCCATGCCGGAAAGCTCATTAGCTCCACTTTCGATGAGTTTATTAAAAATGTTTGGGCACTGATTTGGGATTTCAAGGACTTCAAGCTCACTAGCTTCATTGCACATTTCGCGGGATCGGTTTGGGGTCCTATTCACTTGGATTCTGTGTGGGATATAGGCTCGGCAGAGACCGAATTAACCAAAACTAGGGCAGATGATTGTGATCCTTATCAGAAAGTGGCTGATCCGATTGAATGTAATTCACTATGTTGGAATCTTGATCCTATTCTTCAACATTTATCATTGGATGAAGTCTCTGCCATTGAAGCAATGCCTTTATCTTCCATGTGGGAACCAGATGAACGGTATGGCCTCTTGAGAAAAAAAAACGCTGGTGTCTGGTTTGGCCTTCCAATCAATTATAAGGTGGATTTGTCTTCTATTTCTACCTTTGATTCATGGTTTAATGGTGTAAGTACTTCATTGCAGCAGAATAAGATTTCTTTTACATTGTGGAATATCTGGATGGAGCGTTGTGCATTTATCTATGAGCATAAGGAGCCTAAAGCCTGGGTCATCATCAGGAACTATTTTGGTTTGGTGGTAGGTGGAAAGATGTCTCTCGTGGAAAGATGTCTCTCCAAGCTTCCTCAGCTCTGCATGCTGAAGCGTCTGCTGTTCTTGAGGGTTTTGATTCTAGCTAAGAATCAGGATTTCCAAAATGTTTATTTTGAGATGGATTCTGAGGTGTTGTATTCAGCTGTCTCTTTGAAGTCTTTAAACCATTCTTGGACTATCTACCCTCTTTTGAATGACATTAGGAGGTTGAAAGATGATTTTCAGAGTTTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

337

Amino Acids

38.7

Weight (kDa)

5.63

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 290
AclWI GGATC 6 cut(s) 92, 150, 301, 377, 398, 434
AcuI CTGAAG 1 cut(s) 845
AfaI GTAC 2 cut(s) 95, 637
AfiI CCNNNNNNNGG 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 9 cut(s) 122, 253, 262, 413, 452, 485, 931, 970, 988
AjnI CCWGG 1 cut(s) 728
AluBI AGCT 8 cut(s) 193, 201, 265, 273, 805, 814, 860, 920
AluI AGCT 8 cut(s) 193, 201, 265, 273, 805, 814, 860, 920
Alw26I GTCTC 6 cut(s) 143, 341, 478, 783, 800, 928
AlwI GGATC 6 cut(s) 92, 150, 301, 377, 398, 434
AoxI GGCC 2 cut(s) 529, 565
ApeKI GCWGC 1 cut(s) 646
AspS9I GGNCC 2 cut(s) 157, 305
AsuHPI GGTGA 3 cut(s) 70, 76, 82
AvaII GGWCC 2 cut(s) 157, 305
BaeGI GKGCMC 1 cut(s) 238
BauI CACGAG 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 588
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 1 cut(s) 658
BccI CCATC 7 cut(s) 36, 55, 61, 67, 161, 679, 889
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 730
BcoDI GTCTC 6 cut(s) 143, 341, 478, 783, 800, 928
BfaI CTAG 3 cut(s) 270, 366, 857
BisI GCNGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 648
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 730
Bme18I GGWCC 2 cut(s) 157, 305
BmgT120I GGNCC 2 cut(s) 157, 305
BmiI GGNNCC 3 cut(s) 306, 513, 720
BmrFI CCNGG 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 556, 862
BsaBI GATNNNNATC 2 cut(s) 381, 387
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 729
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 2 cut(s) 28, 159
Bse3DI GCAATG 3 cut(s) 276, 495, 641
Bse8I GATNNNNATC 2 cut(s) 381, 387
BseBI CCWGG 1 cut(s) 730
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 3 cut(s) 47, 472, 690
BseJI GATNNNNATC 2 cut(s) 381, 387
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 3 cut(s) 276, 495, 641
BseMII CTCAG 2 cut(s) 824, 894
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 531, 567
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 3 cut(s) 29, 160, 186
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 6 cut(s) 143, 341, 478, 783, 800, 928
BsnI GGCC 2 cut(s) 531, 567
Bso31I GGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 6 cut(s) 84, 142, 293, 382, 403, 439
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 531, 567
BspCNI CTCAG 2 cut(s) 823, 895
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 306, 513, 720
BspPI GGATC 6 cut(s) 92, 150, 301, 377, 398, 434
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 3 cut(s) 276, 495, 641
BsrFI RCCGGY 2 cut(s) 28, 159
BssAI RCCGGY 2 cut(s) 28, 159
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 6 cut(s) 84, 142, 293, 382, 403, 439
BssSI CACGAG 1 cut(s) 782
Bst2BI CACGAG 1 cut(s) 782
Bst2UI CCWGG 1 cut(s) 730
Bst4CI ACNGT 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 821
BstDEI CTNAG 3 cut(s) 810, 861, 903
BstF5I GGATG 3 cut(s) 47, 472, 690
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 6 cut(s) 87, 145, 296, 385, 406, 442
BstMAI GTCTC 6 cut(s) 143, 341, 478, 783, 800, 928
BstMBI GATC 6 cut(s) 84, 142, 293, 382, 403, 439
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 5 cut(s) 287, 485, 718, 811, 820
BstNI CCWGG 1 cut(s) 730
BstNSI RCATGY 2 cut(s) 175, 823
BstSCI CCNGG 1 cut(s) 728
BstSLI GKGCMC 1 cut(s) 238
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 588
BsuRI GGCC 2 cut(s) 531, 567
BtsCI GGATG 3 cut(s) 47, 472, 690
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 821
Cfr10I RCCGGY 2 cut(s) 28, 159
Cfr13I GGNCC 2 cut(s) 157, 305
CseI GACGC 1 cut(s) 818
Csp6I GTAC 2 cut(s) 94, 636
CviAII CATG 5 cut(s) 172, 182, 505, 618, 820
CviQI GTAC 2 cut(s) 94, 636
DdeI CTNAG 3 cut(s) 810, 861, 903
DpnI GATC 6 cut(s) 86, 144, 295, 384, 405, 441
DpnII GATC 6 cut(s) 84, 142, 293, 382, 403, 439
DraI TTTAAA 1 cut(s) 939
Eco31I GGTCTC 1 cut(s) 341
Eco47I GGWCC 2 cut(s) 157, 305
Eco57I CTGAAG 1 cut(s) 845
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 728
FaeI CATG 5 cut(s) 175, 185, 508, 621, 823
FatI CATG 5 cut(s) 171, 181, 504, 617, 819
FauI CCCGC 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 647
FokI GGATG 3 cut(s) 54, 479, 697
Fsp4HI GCNGC 1 cut(s) 647
FspBI CTAG 3 cut(s) 270, 366, 857
GluI GCNGC 1 cut(s) 647
HaeIII GGCC 2 cut(s) 531, 567
HapII CCGG 3 cut(s) 29, 160, 186
HgaI GACGC 1 cut(s) 818
Hin1II CATG 5 cut(s) 175, 185, 508, 621, 823
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 6 cut(s) 320, 433, 614, 853, 865, 899
HpaII CCGG 3 cut(s) 29, 160, 186
HphI GGTGA 3 cut(s) 70, 76, 82
Hpy188I TCNGA 4 cut(s) 393, 408, 904, 1002
Hpy188III TCNNGA 7 cut(s) 146, 437, 535, 682, 742, 841, 869
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 281, 646, 698, 819
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 485, 718, 811, 820
HpyF3I CTNAG 3 cut(s) 810, 861, 903
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 5 cut(s) 175, 185, 508, 621, 823
Kzo9I GATC 6 cut(s) 84, 142, 293, 382, 403, 439
LmnI GCTCC 3 cut(s) 206, 688, 718
Lsp1109I GCAGC 1 cut(s) 658
MaeI CTAG 3 cut(s) 270, 366, 857
MaeII ACGT 1 cut(s) 126
MalI GATC 6 cut(s) 86, 144, 295, 384, 405, 441
MboI GATC 6 cut(s) 84, 142, 293, 382, 403, 439
MboII GAAGA 3 cut(s) 440, 492, 588
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 3 cut(s) 353, 418, 577
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 8 cut(s) 146, 187, 542, 819, 837, 898, 972, 975
MseI TTAA 4 cut(s) 222, 356, 624, 938
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 3 cut(s) 29, 160, 186
MspR9I CCNGG 1 cut(s) 730
MvaI CCWGG 1 cut(s) 730
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 5 cut(s) 287, 485, 718, 811, 820
NdeII GATC 6 cut(s) 84, 142, 293, 382, 403, 439
NlaIII CATG 5 cut(s) 175, 185, 508, 621, 823
NlaIV GGNNCC 3 cut(s) 306, 513, 720
NmeAIII GCCGAG 1 cut(s) 320
NspI RCATGY 2 cut(s) 175, 823
PaeI GCATGC 1 cut(s) 823
PfeI GAWTC 6 cut(s) 320, 433, 614, 853, 865, 899
PkrI GCNGC 1 cut(s) 648
PpuMI RGGWCCY 1 cut(s) 305
PsiI TTATAA 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 728
PspGI CCWGG 1 cut(s) 728
PspN4I GGNNCC 3 cut(s) 306, 513, 720
PspPI GGNCC 2 cut(s) 157, 305
PspPPI RGGWCCY 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 2 cut(s) 95, 637
RsaNI GTAC 2 cut(s) 94, 636
SaqAI TTAA 4 cut(s) 222, 356, 624, 938
SatI GCNGC 1 cut(s) 647
Sau3AI GATC 6 cut(s) 84, 142, 293, 382, 403, 439
Sau96I GGNCC 2 cut(s) 157, 305
ScaI AGTACT 1 cut(s) 637
ScrFI CCNGG 1 cut(s) 730
SduI GDGCHC 1 cut(s) 238
SinI GGWCC 2 cut(s) 157, 305
SmlI CTYRAG 2 cut(s) 535, 841
SmoI CTYRAG 2 cut(s) 535, 841
SphI GCATGC 1 cut(s) 823
Sse9I AATT 3 cut(s) 353, 418, 577
SsiI CCGC 1 cut(s) 290
SspMI CTAG 3 cut(s) 270, 366, 857
StyD4I CCNGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 33, 210
TaqII GACCGA 1 cut(s) 365
TasI AATT 3 cut(s) 353, 418, 577
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 6 cut(s) 320, 433, 614, 853, 865, 899
Tru1I TTAA 4 cut(s) 222, 356, 624, 938
Tru9I TTAA 4 cut(s) 222, 356, 624, 938
TscAI CASTG 1 cut(s) 243
TseI GCWGC 1 cut(s) 646
TspDTI ATGAA 6 cut(s) 119, 265, 483, 534, 606, 630
TspRI CASTG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 157, 305
XceI RCATGY 2 cut(s) 175, 823
XspI CTAG 3 cut(s) 270, 366, 857
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.