Rh6BG280400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003058
Physical Location & Seq
Reverse (-)
50216559 .. 50216996
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG280400.1

Sequence Viewer

Length: 438 bp
ATGTTCTTCGATCGGCCACGGCGTTCCTGCAGCGCGTTTTGTCTGATGATTGTTCTTTTTCTTGTGATGATCGAAGATGAAGTGGTGAAGGAACACGAGACGGTTGCGAAGGCTGTGCTTCCGGTGATTCTATGTTGCATATTTGTGCTAGATTGCTTCGACATTCAACTAGTAGATGGTTTTACCGAGGTCATTGCAGTTTTGATGATTGGTTGGATTTCTGTGTTTCAGCCCAATCTTACTCAGGCATGGCTTGATCCTTTGTCCGCTTATGTCGGAAGATATATGAGCCTCAACTTCAGGGCTTTGATCCTACATTGTTTTCAGTTGGGTGGGCAGCTTTTACTTGTCATGGTTTGGATTTTCTTTTGGAGTTTCAAGTTTGTCTTGGGTCTTGGTGTCGGGTATGGATTAAGAAAGTGGTTACATCCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.69

Weight (kDa)

6.25

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 267
AclWI GGATC 2 cut(s) 251, 304
AcoI YGGCCR 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 167, 379
AhlI ACTAGT 1 cut(s) 169
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 251, 304
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 30, 337
AspLEI GCGC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 97, 136
BauI CACGAG 1 cut(s) 95
BbvI GCAGC 2 cut(s) 42, 349
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 6 cut(s) 86, 97, 120, 131, 176, 210
BcoDI GTCTC 1 cut(s) 92
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 2 cut(s) 149, 170
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 2 cut(s) 31, 338
BlsI GCNGC 2 cut(s) 32, 339
BsaJI CCNNGG 2 cut(s) 17, 186
BsaWI WCCGGW 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 17, 186
BseGI GGATG 2 cut(s) 427, 431
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 42, 349
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 4 cut(s) 10, 69, 256, 309
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 32
BspPI GGATC 2 cut(s) 251, 304
BsrDI GCAATG 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 17, 186
BssMI GATC 4 cut(s) 10, 69, 256, 309
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 427, 431
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 4 cut(s) 13, 72, 259, 312
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 4 cut(s) 10, 69, 256, 309
BstMCI CGRYCG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 28
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 42, 349
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 427, 431
CfoI GCGC 1 cut(s) 35
CviAII CATG 2 cut(s) 249, 352
CviJI RGCY 7 cut(s) 16, 113, 232, 253, 291, 305, 340
CviKI_1 RGCY 7 cut(s) 16, 113, 232, 253, 291, 305, 340
DdeI CTNAG 1 cut(s) 243
DpnI GATC 4 cut(s) 12, 71, 258, 311
DpnII GATC 4 cut(s) 10, 69, 256, 309
EaeI YGGCCR 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 2 cut(s) 252, 355
FaiI YATR 8 cut(s) 133, 140, 250, 273, 285, 287, 353, 408
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 2 cut(s) 248, 351
Fnu4HI GCNGC 2 cut(s) 31, 338
FokI GGATG 2 cut(s) 414, 418
Fsp4HI GCNGC 2 cut(s) 31, 338
FspBI CTAG 2 cut(s) 149, 170
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 31, 338
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 122
HhaI GCGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 252, 355
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 97, 136
Hpy188I TCNGA 2 cut(s) 45, 278
HpyAV CCTTC 2 cut(s) 82, 103
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 30, 138, 197
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 2 cut(s) 252, 355
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 4 cut(s) 10, 69, 256, 309
LpnPI CCDG 4 cut(s) 40, 135, 230, 286
Lsp1109I GCAGC 2 cut(s) 42, 349
MaeI CTAG 2 cut(s) 149, 170
MaeIII GTNAC 1 cut(s) 423
MalI GATC 4 cut(s) 12, 71, 258, 311
MboI GATC 4 cut(s) 10, 69, 256, 309
MboII GAAGA 2 cut(s) 86, 291
MmeI TCCRAC 2 cut(s) 194, 256
MnlI CCTC 2 cut(s) 181, 302
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 35
NdeII GATC 4 cut(s) 10, 69, 256, 309
NlaIII CATG 2 cut(s) 252, 355
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 32, 339
Ple19I CGATCG 1 cut(s) 13
PstI CTGCAG 1 cut(s) 32
PvuI CGATCG 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 2 cut(s) 31, 338
Sau3AI GATC 4 cut(s) 10, 69, 256, 309
SetI ASST 2 cut(s) 192, 342
SfcI CTRYAG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 169
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 149, 170
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 3 cut(s) 9, 72, 159
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TseI GCWGC 2 cut(s) 30, 337
TspDTI ATGAA 1 cut(s) 93
XspI CTAG 2 cut(s) 149, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.