Rh6BG280300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003058
Physical Location & Seq
Reverse (-)
50215360 .. 50216007
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG280300.1

Sequence Viewer

Length: 648 bp
ATGTGGCAAGTCTTGAACGGAGAATCAATTAACCCTTGGAAGGACAAATGGATCCCAGGTTTGCTTGGTGGAAAATTGGGGGCTTCTAATCTTGCAGCAGATGATTGTGATCCTTATCAGAAAGTGGCTGATCCGATTGATTGTAATTCACTATGTTGGAATCTTGATCCTATTCTTGAACATTTATCATTGGATGAAGTTTCTGCCATTGAAGCAATGCCTTTATCTTCCATGTGGGAACCAGATGAACGGTATGGCCTTTTGAGAAAAAAAAACGGTGAGTATAAGGTGAGATCTGGTTACCATGTTCAACATGCTATCAAGAAAAAACCTTCCTTGCAATCTATGCAAACTTCCCACATTTTACTTTCTGAAGTCTGGAAACAAATTGGTGCTGCCCTACTCTGCCCAAGTTTAGGCATTTTTTTATGGAAAGTTTGCTCTAATTGTCTTCCTTCCTTTGCCAACCTGCATGTTAAAAAAGTTGCTCAATCGCCAATGTGTCCTATTTGCTCTAAGCATAAGGAAACTGTGCTCATATTCTTTTACTTTGTCCTTGGACAGCTGGTGTCTGGTTTGGCCTTCCAATCAATTATAAGGTGGATTTGTCTTCTATTTCTACCTTTGATTCATGGTTTAATGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

215

Amino Acids

24.18

Weight (kDa)

8.05

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 115 - 178 5.7e-06 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 596
Acc36I ACCTGC 1 cut(s) 477
AclWI GGATC 5 cut(s) 46, 59, 104, 125, 161
AcuI CTGAAG 1 cut(s) 393
AfiI CCNNNNNNNGG 2 cut(s) 40, 416
AgsI TTSAA 4 cut(s) 16, 179, 212, 311
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 565
AluI AGCT 1 cut(s) 565
Alw21I GWGCWC 1 cut(s) 537
AlwI GGATC 5 cut(s) 46, 59, 104, 125, 161
AoxI GGCC 2 cut(s) 256, 579
ApeKI GCWGC 2 cut(s) 95, 395
AsuHPI GGTGA 2 cut(s) 290, 301
BamHI GGATCC 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 443, 602
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 107, 382
BciT130I CCWGG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 293
BisI GCNGC 2 cut(s) 96, 396
BlsI GCNGC 2 cut(s) 97, 397
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 53, 240
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 443, 602
BsaBI GATNNNNATC 2 cut(s) 108, 114
BsaJI CCNNGG 3 cut(s) 35, 55, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 416
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 2 cut(s) 108, 114
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 35, 55, 556
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 2 cut(s) 108, 114
BseLI CCNNNNNNNGG 2 cut(s) 40, 416
BseMI GCAATG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 107, 382
BshFI GGCC 2 cut(s) 258, 581
BsiHKAI GWGCWC 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 40, 416
BsnI GGCC 2 cut(s) 258, 581
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 5 cut(s) 51, 109, 130, 166, 293
BspANI GGCC 2 cut(s) 258, 581
BspLI GGNNCC 2 cut(s) 53, 240
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 5 cut(s) 46, 59, 104, 125, 161
BsrDI GCAATG 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 35, 55, 556
BssMI GATC 5 cut(s) 51, 109, 130, 166, 293
BssT1I CCWWGG 2 cut(s) 35, 556
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 252, 278, 532
BstAPI GCANNNNNTGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 516
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 5 cut(s) 54, 112, 133, 169, 296
BstMBI GATC 5 cut(s) 51, 109, 130, 166, 293
BstMWI GCNNNNNNNGC 2 cut(s) 212, 346
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 317, 476
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 107, 382
BstV2I GAAGAC 2 cut(s) 443, 602
BstX2I RGATCY 2 cut(s) 51, 293
BstYI RGATCY 2 cut(s) 51, 293
BsuRI GGCC 2 cut(s) 258, 581
BtsCI GGATG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 477
CviAII CATG 5 cut(s) 232, 305, 314, 473, 632
CviJI RGCY 5 cut(s) 83, 128, 258, 565, 581
CviKI_1 RGCY 5 cut(s) 83, 128, 258, 565, 581
DdeI CTNAG 1 cut(s) 516
DpnI GATC 5 cut(s) 53, 111, 132, 168, 295
DpnII GATC 5 cut(s) 51, 109, 130, 166, 293
Eco130I CCWWGG 2 cut(s) 35, 556
Eco57I CTGAAG 1 cut(s) 393
Eco91I GGTNACC 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 35, 556
ErhI CCWWGG 2 cut(s) 35, 556
FaeI CATG 5 cut(s) 235, 308, 317, 476, 635
FatI CATG 5 cut(s) 231, 304, 313, 472, 631
Fnu4HI GCNGC 2 cut(s) 96, 396
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 96, 396
GluI GCNGC 2 cut(s) 96, 396
HaeIII GGCC 2 cut(s) 258, 581
Hin1II CATG 5 cut(s) 235, 308, 317, 476, 635
HinfI GANTC 3 cut(s) 23, 160, 628
HphI GGTGA 2 cut(s) 290, 301
Hpy188I TCNGA 3 cut(s) 120, 135, 373
Hpy188III TCNNGA 5 cut(s) 13, 164, 176, 322, 379
HpyAV CCTTC 4 cut(s) 34, 342, 465, 592
HpyCH4III ACNGT 3 cut(s) 252, 278, 532
HpyCH4V TGCA 4 cut(s) 95, 340, 349, 472
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 346
HpyF3I CTNAG 1 cut(s) 516
Hsp92II CATG 5 cut(s) 235, 308, 317, 476, 635
Kzo9I GATC 5 cut(s) 51, 109, 130, 166, 293
LpnPI CCDG 8 cut(s) 42, 69, 255, 282, 364, 482, 551, 558
Lsp1109I GCAGC 2 cut(s) 107, 382
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 53, 111, 132, 168, 295
MboI GATC 5 cut(s) 51, 109, 130, 166, 293
MboII GAAGA 3 cut(s) 219, 443, 602
MflI RGATCY 2 cut(s) 51, 293
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 6 cut(s) 27, 74, 145, 387, 445, 591
MmeI TCCRAC 1 cut(s) 137
MseI TTAA 3 cut(s) 30, 477, 638
MspA1I CMGCKG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 212, 346
NdeII GATC 5 cut(s) 51, 109, 130, 166, 293
NlaIII CATG 5 cut(s) 235, 308, 317, 476, 635
NlaIV GGNNCC 2 cut(s) 53, 240
NspI RCATGY 2 cut(s) 317, 476
PfeI GAWTC 3 cut(s) 23, 160, 628
PkrI GCNGC 2 cut(s) 97, 397
PsiI TTATAA 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 53, 240
PsuI RGATCY 2 cut(s) 51, 293
PvuII CAGCTG 1 cut(s) 565
SaqAI TTAA 3 cut(s) 30, 477, 638
SatI GCNGC 2 cut(s) 96, 396
Sau3AI GATC 5 cut(s) 51, 109, 130, 166, 293
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 537
SetI ASST 7 cut(s) 61, 291, 334, 471, 567, 602, 625
Sse9I AATT 6 cut(s) 27, 74, 145, 387, 445, 591
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 2 cut(s) 35, 556
TaaI ACNGT 3 cut(s) 252, 278, 532
TasI AATT 6 cut(s) 27, 74, 145, 387, 445, 591
TfiI GAWTC 3 cut(s) 23, 160, 628
Tru1I TTAA 3 cut(s) 30, 477, 638
Tru9I TTAA 3 cut(s) 30, 477, 638
TseI GCWGC 2 cut(s) 95, 395
TspDTI ATGAA 3 cut(s) 210, 261, 620
TspGWI ACGGA 1 cut(s) 33
XceI RCATGY 2 cut(s) 317, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.