Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003058

Physical Location & Seq

Genomic Coordinates Forward (+)

25156484 .. 25157130

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAAGTGTTTCGAAGCGCTTTATTACAAGCGTGGCAAATGGGTCTTGTGAGGGGTCTTTGTTTGGAGGAGATGGCCGGTGTGACTCATAGACATGCATTGCTTCAAAGCCGAGAATATCGAGTTCCGGTAGACTATGGCCCTTTGGTTGATTTTGACTTTGATGAGAGCAAGATTGTTGGCTTGGTTGGCTCAAAGAATAGTCGAATATGCATATGGAGGCGCAGTGGGATGACTAGGATATTAAACCCCTTCAAGTGCAAGGGTACCTTGCCGAAGGGTTTATGCATGAGCTACCGTGATCCGCAGGCCGTGGTTGGATGTACGGCGGCCTTTGCTCGAGTGTTTGACATGTACGGTAGCCAATGTTCTCAAATTCTTAGAATGCACGACCACGAGGTGCCGGTGACATGCCTAGGGTTGAGTGATGAAGGTAGTCGGTTGTCCATTCTTGCTGGTGGTGGTTCTTCTATCACGGTTTCCTCTGTACTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

165

Amino Acids

18.17

Weight (kDa)

8.75

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003058)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890 FvH4_2g17890
prunus_persica	Prupe.6G122300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0283161
rosa_laevigata	RLG00000012709 RLG00000012841
rosa_multiflora	Rmu_sc0000159.1_g000014
rosa_roxburghii	Rroxscaffold_7G00184310 Rroxscaffold_7G00185720 Rroxscaffold_7G00185730
rosa_rugosa	Rorug06G0151700 Rorug06G0151800 Rorug07G0212900
rosa_samantha	Rh3DG284600 Rh6AG264600 Rh6AG264700 Rh6BG267500 Rh6BG280300 Rh6BG280400 Rh6CG266500 Rh6CG266600 Rh6DG259800 Rh6DG259900 Rh7CG376400
rosa_wichuraiana	Rw6G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	2 cut(s)	266, 400
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	2 cut(s)	305, 329
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	4 cut(s)	268, 325, 356, 489
AfeI	AGCGCT	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	107, 256
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	339
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	4 cut(s)	75, 139, 309, 330
ApoI	RAATTY	1 cut(s)	375
Asp718I	GGTACC	1 cut(s)	266
AspA2I	CCTAGG	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	20, 225
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	339
AvrII	CCTAGG	1 cut(s)	415
BanI	GGYRCC	2 cut(s)	266, 400
BauI	CACGAG	1 cut(s)	395
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	296, 342
BcgI	CGANNNNNNTGC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	237, 416
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	1 cut(s)	330
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	268, 402
Bpu14I	TTCGAA	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	312, 415
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bse118I	RCCGGY	2 cut(s)	77, 403
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	312, 415
BseGI	GGATG	2 cut(s)	237, 326
BseMI	GCAATG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	4 cut(s)	77, 141, 311, 332
BshNI	GGYRCC	2 cut(s)	266, 400
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	78, 128, 404
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	4 cut(s)	77, 141, 311, 332
BsoBI	CYCGRG	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	2 cut(s)	305, 329
BspANI	GGCC	4 cut(s)	77, 141, 311, 332
BspLI	GGNNCC	2 cut(s)	268, 402
BspPI	GGATC	1 cut(s)	296
BspT104I	TTCGAA	1 cut(s)	13
BspT107I	GGYRCC	2 cut(s)	266, 400
BsrDI	GCAATG	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	77, 403
BssAI	RCCGGY	2 cut(s)	77, 403
BssECI	CCNNGG	2 cut(s)	312, 415
BssMI	GATC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	299, 359, 478
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	237, 326
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 225
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 335
BstNSI	RCATGY	3 cut(s)	98, 355, 414
BsuRI	GGCC	4 cut(s)	77, 141, 311, 332
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	237, 326
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	2 cut(s)	20, 225
Cfr10I	RCCGGY	2 cut(s)	77, 403
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	4 cut(s)	267, 324, 355, 488
CviAII	CATG	4 cut(s)	95, 289, 352, 411
CviJI	RGCY	9 cut(s)	77, 111, 141, 183, 192, 294, 311, 332, 363
CviKI_1	RGCY	9 cut(s)	77, 111, 141, 183, 192, 294, 311, 332, 363
CviQI	GTAC	4 cut(s)	267, 324, 355, 488
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	3 cut(s)	100, 215, 290
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	98, 292, 355, 414
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	4 cut(s)	94, 288, 351, 410
FauNDI	CATATG	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	2 cut(s)	244, 333
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	237, 416
GlaI	GCGC	2 cut(s)	19, 224
GluI	GCNGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	4 cut(s)	77, 141, 311, 332
HapII	CCGG	3 cut(s)	78, 128, 404
HhaI	GCGC	2 cut(s)	20, 225
Hin1II	CATG	4 cut(s)	98, 292, 355, 414
Hin6I	GCGC	2 cut(s)	18, 223
HinP1I	GCGC	2 cut(s)	18, 223
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	3 cut(s)	78, 128, 404
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	262, 271, 425
HpyCH4III	ACNGT	3 cut(s)	299, 359, 478
HpyCH4V	TGCA	6 cut(s)	4, 98, 213, 261, 288, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 335
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	98, 292, 355, 414
HspAI	GCGC	2 cut(s)	18, 223
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	301
LpnPI	CCDG	5 cut(s)	91, 141, 293, 417, 441
MaeI	CTAG	2 cut(s)	237, 416
MaeIII	GTNAC	2 cut(s)	82, 406
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	459
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	45, 61, 213, 391, 493
Mph1103I	ATGCAT	3 cut(s)	100, 215, 290
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	3 cut(s)	78, 128, 404
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	189, 335
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	4 cut(s)	98, 292, 355, 414
NlaIV	GGNNCC	2 cut(s)	268, 402
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	82, 406
NsiI	ATGCAT	3 cut(s)	100, 215, 290
NspI	RCATGY	3 cut(s)	98, 355, 414
NspV	TTCGAA	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	339
PciI	ACATGT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	268, 402
PspPI	GGNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	339
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
RsaI	GTAC	4 cut(s)	268, 325, 356, 489
RsaNI	GTAC	4 cut(s)	267, 324, 355, 488
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	79
SetI	ASST	4 cut(s)	272, 296, 402, 436
Sfr274I	CTCGAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	2 cut(s)	305, 329
SspMI	CTAG	2 cut(s)	237, 416
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	299, 359, 478
TaqI	TCGA	4 cut(s)	13, 121, 205, 340
TasI	AATT	1 cut(s)	375
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	82, 406
Tsp45I	GTSAC	2 cut(s)	82, 406
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	3 cut(s)	98, 355, 414
XhoI	CTCGAG	1 cut(s)	339
XmaJI	CCTAGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	237, 416
Zsp2I	ATGCAT	3 cut(s)	100, 215, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.