FvH4_2g17890

F-box WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15341465 .. 15347057
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17890.t10

Sequence Viewer

Length: 1278 bp
ATGTCTTCTTGTTTGAAAAACAAATCACGTTCCCTTCCAGCCGGGAGGGGTTTCGCTCAGGCTGGCAGCAACAAGAAGAGGCCGAGAAGAGGACCTCCGCTGAACAATGCTCTTGACCCTGATGCCCTTTCGGCTGTCTTCTCTTATCTTGACTGCATGTATGACCTTGCCAGCTGTTCCTTGGTTTGCCGTGCCTGGAGGAGGGCTGTCACCAGAGGTATATGTTTCAATGTGCTTTATCGCAAGCAGTGGGAGATGGGTCTTGTGAGGGGTGTTTGTTTGGAGGAGATGGCCGGGGCGATTCATAGACATGCATTACTTCAAAGTCCTCGGATTAATGTTGATCAGTGGAAGGGTCACTCTGGTAATATTGATCAATGCCGGATGAAGGACGGGTGGCTTCTCACTGGCAGCACAAGGGATAAGTTCATGCGTCTGTGGTCAGTGGAAGAAAGCCGTAAATGTGAATATAATTTCCAAGGAGAATATCGATTTCCAGTAGACTATGGCCCTTTGGTTGGTTTTGACTTTGATGAGAGCAAGATTGTTGGCTTGGTTGGCTCAGAGAGTAGTCGAATATGCATATGGAGGCACAGTGGGATGACTAGGATATTGAACCCCTTTAAGTGCAAGGGTACCATTCCGATGGGTTTATGCATGAGTTACTGTGATCCTGAGGCTGTTGTTGGATGTGCTGACGGGACTGCTCGAGTGTTTGACATGTACAGTAGCCAATGTTCACATATTATTAGAATGCACGACCTTGAGGTGCCAGTAACATGCCTAGGGCTGAGTGATAAAGGTGAGATAAAGAGTTTGAGTTACAACCCTTGCGGCAATGACAAGACAGTGTTTGCTGGATCAATGAATGGATATGTGTACAGTTGGGACCTGAGGACATGTAGACTTTTGTGGGAAACGAGATTGAGTGAGTATGCTGTGTGTTCAATGCAGCACAGGAGATATGATGCAACAACTTTGGTTGTGGGTGGAATGGATGGTGTGCTTCACTTACTGGATCAGAACACAGGGAATGTGGTTACCAAATTTGTCTTGGACACCAGCTACTGTGTTCTGTCAAGTACTAGACCTGCTTTAAGTTCAAGTGGTGGTTGTTCTCGAAACATGGTATTTCAGAGATTGAAAGGAAGAAGGACTGCACCAGATGCCGACATTGTCAGCATTCCTGCACCTCCCATCACCTGCTTGGCGTTGGGGATGAAGAGAATTATCACCACTCACGATAAGGACTACATCAGAACCTGGAAATTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.66

Weight (kDa)

9.02

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 125 - 275 4.8e-08 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 143 - 282 1.4e-08 CDC20/Fizzy WD40 domain
Beta-prop_ACSF4 PF13570 196 - 289 1.5e-06 Beta-alanine-activating enzyme, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1211
Acc36I ACCTGC 2 cut(s) 1099, 1211
Acc65I GGTACC 1 cut(s) 635
AccB1I GGYRCC 2 cut(s) 635, 769
AccI GTMKAC 2 cut(s) 501, 904
AciI CCGC 2 cut(s) 98, 834
AclWI GGATC 3 cut(s) 665, 868, 1026
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 2 cut(s) 1046, 1268
AfaI GTAC 4 cut(s) 637, 725, 881, 1084
AfiI CCNNNNNNNGG 4 cut(s) 89, 201, 388, 518
AflIII ACRYGT 2 cut(s) 720, 899
AgsI TTSAA 7 cut(s) 16, 229, 323, 616, 948, 1104, 1144
AjnI CCWGG 2 cut(s) 194, 1262
AluBI AGCT 2 cut(s) 174, 1065
AluI AGCT 2 cut(s) 174, 1065
AlwI GGATC 3 cut(s) 665, 868, 1026
AlwNI CAGNNNCTG 2 cut(s) 1068, 1263
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 3 cut(s) 80, 291, 508
ApeKI GCWGC 3 cut(s) 66, 411, 952
ApoI RAATTY 2 cut(s) 1046, 1268
AseI ATTAAT 1 cut(s) 336
Asp718I GGTACC 1 cut(s) 635
AspA2I CCTAGG 1 cut(s) 784
AspS9I GGNCC 3 cut(s) 92, 509, 889
AsuC2I CCSGG 2 cut(s) 43, 295
AsuHPI GGTGA 4 cut(s) 202, 815, 1192, 1225
AvaI CYCGRG 1 cut(s) 708
AvaII GGWCC 2 cut(s) 92, 889
AvrII CCTAGG 1 cut(s) 784
AxyI CCTNAGG 2 cut(s) 675, 893
BanI GGYRCC 2 cut(s) 635, 769
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 78, 423, 964
BccI CCATC 5 cut(s) 250, 283, 640, 992, 1205
BceAI ACGGC 2 cut(s) 174, 441
BciT130I CCWGG 2 cut(s) 196, 1264
BclI TGATCA 2 cut(s) 343, 373
BcnI CCSGG 2 cut(s) 43, 295
BfaI CTAG 4 cut(s) 606, 785, 1086, 1276
BfuAI ACCTGC 2 cut(s) 1099, 1211
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 67, 412, 835, 953
BlnI CCTAGG 1 cut(s) 784
BlsI GCNGC 4 cut(s) 68, 413, 836, 954
BmcAI AGTACT 1 cut(s) 1084
Bme1390I CCNGG 4 cut(s) 43, 196, 295, 1264
Bme18I GGWCC 2 cut(s) 92, 889
BmeT110I CYCGRG 1 cut(s) 708
BmgT120I GGNCC 3 cut(s) 92, 509, 889
BmiI GGNNCC 3 cut(s) 637, 771, 890
BmrFI CCNGG 4 cut(s) 43, 196, 295, 1264
BmsI GCATC 3 cut(s) 112, 958, 1156
BpiI GAAGAC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 785
BpuMI CCSGG 2 cut(s) 43, 295
Bsa29I ATCGAT 1 cut(s) 490
BsaJI CCNNGG 5 cut(s) 180, 294, 329, 478, 784
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 201, 388, 518
Bse1I ACTGG 4 cut(s) 412, 497, 773, 1020
Bse21I CCTNAGG 2 cut(s) 675, 893
Bse3DI GCAATG 1 cut(s) 844
BseBI CCWGG 2 cut(s) 196, 1264
BseCI ATCGAT 1 cut(s) 490
BseDI CCNNGG 5 cut(s) 180, 294, 329, 478, 784
BseGI GGATG 5 cut(s) 390, 606, 695, 1003, 1224
BseLI CCNNNNNNNGG 4 cut(s) 89, 201, 388, 518
BseMI GCAATG 1 cut(s) 844
BseMII CTCAG 5 cut(s) 71, 576, 666, 782, 884
BseNI ACTGG 4 cut(s) 412, 497, 773, 1020
BseRI GAGGAG 2 cut(s) 214, 299
BseXI GCAGC 3 cut(s) 78, 423, 964
BsgI GTGCAG 2 cut(s) 1143, 1173
BshFI GGCC 3 cut(s) 82, 293, 510
BshNI GGYRCC 2 cut(s) 635, 769
BshVI ATCGAT 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 3 cut(s) 42, 294, 382
BslFI GGGAC 2 cut(s) 715, 902
BslI CCNNNNNNNGG 4 cut(s) 89, 201, 388, 518
BsmFI GGGAC 2 cut(s) 715, 902
BsmI GAATGC 2 cut(s) 759, 1182
BsnI GGCC 3 cut(s) 82, 293, 510
BsoBI CYCGRG 1 cut(s) 708
Bsp1407I TGTACA 2 cut(s) 723, 879
Bsp143I GATC 5 cut(s) 343, 373, 670, 860, 1018
BspACI CCGC 2 cut(s) 98, 834
BspANI GGCC 3 cut(s) 82, 293, 510
BspCNI CTCAG 5 cut(s) 70, 575, 667, 783, 885
BspDI ATCGAT 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 637, 771, 890
BspMI ACCTGC 2 cut(s) 1099, 1211
BspPI GGATC 3 cut(s) 665, 868, 1026
BspT107I GGYRCC 2 cut(s) 635, 769
BsrDI GCAATG 1 cut(s) 844
BsrGI TGTACA 2 cut(s) 723, 879
BsrI ACTGG 4 cut(s) 412, 497, 773, 1020
BssECI CCNNGG 5 cut(s) 180, 294, 329, 478, 784
BssMI GATC 5 cut(s) 343, 373, 670, 860, 1018
BssT1I CCWWGG 3 cut(s) 180, 478, 784
Bst2UI CCWGG 2 cut(s) 196, 1264
Bst4CI ACNGT 6 cut(s) 596, 668, 728, 850, 884, 1070
Bst6I CTCTTC 3 cut(s) 71, 82, 1217
BstAPI GCANNNNNTGC 1 cut(s) 1166
BstAUI TGTACA 2 cut(s) 723, 879
BstC8I GCNNGC 3 cut(s) 64, 172, 245
BstDEI CTNAG 5 cut(s) 57, 562, 675, 791, 893
BstEII GGTNACC 1 cut(s) 1039
BstENI CCTNNNNNAGG 1 cut(s) 199
BstF5I GGATG 5 cut(s) 390, 606, 695, 1003, 1224
BstKTI GATC 5 cut(s) 346, 376, 673, 863, 1021
BstMBI GATC 5 cut(s) 343, 373, 670, 860, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 131, 558, 1166
BstNI CCWGG 2 cut(s) 196, 1264
BstNSI RCATGY 5 cut(s) 160, 314, 724, 783, 903
BstPI GGTNACC 1 cut(s) 1039
BstSCI CCNGG 4 cut(s) 41, 194, 293, 1262
BstV1I GCAGC 3 cut(s) 78, 423, 964
BstV2I GAAGAC 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 646
Bsu15I ATCGAT 1 cut(s) 490
Bsu36I CCTNAGG 2 cut(s) 675, 893
BsuRI GGCC 3 cut(s) 82, 293, 510
BsuTUI ATCGAT 1 cut(s) 490
BtsCI GGATG 5 cut(s) 390, 606, 695, 1003, 1224
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 6 cut(s) 254, 353, 405, 450, 601, 855
BveI ACCTGC 2 cut(s) 1099, 1211
Cac8I GCNNGC 3 cut(s) 64, 172, 245
CaiI CAGNNNCTG 2 cut(s) 1068, 1263
Cfr13I GGNCC 3 cut(s) 92, 509, 889
ClaI ATCGAT 1 cut(s) 490
CseI GACGC 1 cut(s) 422
Csp6I GTAC 4 cut(s) 636, 724, 880, 1083
CviAII CATG 8 cut(s) 157, 311, 430, 658, 721, 780, 900, 1126
CviQI GTAC 4 cut(s) 636, 724, 880, 1083
DdeI CTNAG 5 cut(s) 57, 562, 675, 791, 893
DpnI GATC 5 cut(s) 345, 375, 672, 862, 1020
DpnII GATC 5 cut(s) 343, 373, 670, 860, 1018
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 3 cut(s) 71, 82, 1217
EarI CTCTTC 3 cut(s) 71, 82, 1217
Eco130I CCWWGG 3 cut(s) 180, 478, 784
Eco47I GGWCC 2 cut(s) 92, 889
Eco81I CCTNAGG 2 cut(s) 675, 893
Eco88I CYCGRG 1 cut(s) 708
Eco91I GGTNACC 1 cut(s) 1039
EcoNI CCTNNNNNAGG 1 cut(s) 199
EcoO109I RGGNCCY 2 cut(s) 92, 889
EcoO65I GGTNACC 1 cut(s) 1039
EcoRII CCWGG 2 cut(s) 194, 1262
EcoT14I CCWWGG 3 cut(s) 180, 478, 784
EcoT22I ATGCAT 3 cut(s) 316, 584, 659
ErhI CCWWGG 3 cut(s) 180, 478, 784
FaeI CATG 8 cut(s) 160, 314, 433, 661, 724, 783, 903, 1129
FaqI GGGAC 2 cut(s) 715, 902
FatI CATG 8 cut(s) 156, 310, 429, 657, 720, 779, 899, 1125
FauNDI CATATG 1 cut(s) 584
FbaI TGATCA 2 cut(s) 343, 373
FblI GTMKAC 2 cut(s) 501, 904
Fnu4HI GCNGC 4 cut(s) 67, 412, 835, 953
FokI GGATG 5 cut(s) 397, 613, 702, 1010, 1231
Fsp4HI GCNGC 4 cut(s) 67, 412, 835, 953
FspBI CTAG 4 cut(s) 606, 785, 1086, 1276
GluI GCNGC 4 cut(s) 67, 412, 835, 953
GsuI CTGGAG 1 cut(s) 217
HaeIII GGCC 3 cut(s) 82, 293, 510
HapII CCGG 3 cut(s) 42, 294, 382
HgaI GACGC 1 cut(s) 422
Hin1II CATG 8 cut(s) 160, 314, 433, 661, 724, 783, 903, 1129
HinfI GANTC 1 cut(s) 301
HpaII CCGG 3 cut(s) 42, 294, 382
HphI GGTGA 4 cut(s) 202, 815, 1192, 1225
Hpy166II GTNNAC 4 cut(s) 502, 740, 880, 905
Hpy188I TCNGA 6 cut(s) 333, 565, 645, 1023, 1137, 1259
Hpy188III TCNNGA 5 cut(s) 113, 149, 674, 1119, 1241
Hpy8I GTNNAC 4 cut(s) 502, 740, 880, 905
HpyAV CCTTC 4 cut(s) 44, 346, 382, 1146
HpyCH4III ACNGT 6 cut(s) 596, 668, 728, 850, 884, 1070
HpyCH4IV ACGT 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 558, 1166
HpyF3I CTNAG 5 cut(s) 57, 562, 675, 791, 893
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 8 cut(s) 160, 314, 433, 661, 724, 783, 903, 1129
KpnI GGTACC 1 cut(s) 639
Ksp22I TGATCA 2 cut(s) 343, 373
Kzo9I GATC 5 cut(s) 343, 373, 670, 860, 1018
Lsp1109I GCAGC 3 cut(s) 78, 423, 964
LweI GCATC 3 cut(s) 112, 958, 1156
MaeI CTAG 4 cut(s) 606, 785, 1086, 1276
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 6 cut(s) 208, 356, 662, 775, 821, 1039
MalI GATC 5 cut(s) 345, 375, 672, 862, 1020
MboI GATC 5 cut(s) 343, 373, 670, 860, 1018
MboII GAAGA 6 cut(s) 88, 99, 130, 461, 1161, 1234
MluCI AATT 4 cut(s) 472, 1046, 1227, 1268
MmeI TCCRAC 1 cut(s) 667
Mph1103I ATGCAT 3 cut(s) 316, 584, 659
MseI TTAA 3 cut(s) 336, 624, 1097
MslI CAYNNNNRTG 2 cut(s) 309, 644
MspA1I CMGCKG 2 cut(s) 100, 174
MspI CCGG 3 cut(s) 42, 294, 382
MspR9I CCNGG 4 cut(s) 43, 196, 295, 1264
Mva1269I GAATGC 2 cut(s) 759, 1182
MvaI CCWGG 2 cut(s) 196, 1264
MwoI GCNNNNNNNGC 3 cut(s) 131, 558, 1166
NciI CCSGG 2 cut(s) 43, 295
NdeI CATATG 1 cut(s) 584
NdeII GATC 5 cut(s) 343, 373, 670, 860, 1018
NlaIII CATG 8 cut(s) 160, 314, 433, 661, 724, 783, 903, 1129
NlaIV GGNNCC 3 cut(s) 637, 771, 890
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 208, 356
NsiI ATGCAT 3 cut(s) 316, 584, 659
NspI RCATGY 5 cut(s) 160, 314, 724, 783, 903
PaeR7I CTCGAG 1 cut(s) 708
PaqCI CACCTGC 1 cut(s) 1211
PciI ACATGT 2 cut(s) 720, 899
PctI GAATGC 2 cut(s) 759, 1182
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 1175
PkrI GCNGC 4 cut(s) 68, 413, 836, 954
PpuMI RGGWCCY 2 cut(s) 92, 889
PscI ACATGT 2 cut(s) 720, 899
PshBI ATTAAT 1 cut(s) 336
Psp5II RGGWCCY 2 cut(s) 92, 889
Psp6I CCWGG 2 cut(s) 194, 1262
PspEI GGTNACC 1 cut(s) 1039
PspGI CCWGG 2 cut(s) 194, 1262
PspN4I GGNNCC 3 cut(s) 637, 771, 890
PspPI GGNCC 3 cut(s) 92, 509, 889
PspPPI RGGWCCY 2 cut(s) 92, 889
PspXI VCTCGAGB 1 cut(s) 708
PsrI GAACNNNNNNTAC 2 cut(s) 721, 753
PstNI CAGNNNCTG 2 cut(s) 1068, 1263
PsyI GACNNNGTC 1 cut(s) 1175
PvuII CAGCTG 1 cut(s) 174
RsaI GTAC 4 cut(s) 637, 725, 881, 1084
RsaNI GTAC 4 cut(s) 636, 724, 880, 1083
RseI CAYNNNNRTG 2 cut(s) 309, 644
SaqAI TTAA 3 cut(s) 336, 624, 1097
SatI GCNGC 4 cut(s) 67, 412, 835, 953
Sau3AI GATC 5 cut(s) 343, 373, 670, 860, 1018
Sau96I GGNCC 3 cut(s) 92, 509, 889
ScaI AGTACT 1 cut(s) 1084
ScrFI CCNGG 4 cut(s) 43, 196, 295, 1264
SfaNI GCATC 3 cut(s) 112, 958, 1156
Sfr274I CTCGAG 1 cut(s) 708
SinI GGWCC 2 cut(s) 92, 889
SlaI CTCGAG 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 309, 644
SmlI CTYRAG 2 cut(s) 708, 764
SmoI CTYRAG 2 cut(s) 708, 764
Sse9I AATT 4 cut(s) 472, 1046, 1227, 1268
SsiI CCGC 2 cut(s) 98, 834
SspI AATATT 1 cut(s) 370
SspMI CTAG 4 cut(s) 606, 785, 1086, 1276
StyD4I CCNGG 4 cut(s) 41, 194, 293, 1262
StyI CCWWGG 3 cut(s) 180, 478, 784
TaaI ACNGT 6 cut(s) 596, 668, 728, 850, 884, 1070
TaiI ACGT 1 cut(s) 31
TaqI TCGA 4 cut(s) 490, 574, 709, 1120
TasI AATT 4 cut(s) 472, 1046, 1227, 1268
TatI WGTACW 3 cut(s) 723, 879, 1082
TauI GCSGC 1 cut(s) 837
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 3 cut(s) 336, 624, 1097
Tru9I TTAA 3 cut(s) 336, 624, 1097
TscAI CASTG 6 cut(s) 254, 353, 412, 450, 601, 855
TseFI GTSAC 2 cut(s) 208, 356
TseI GCWGC 3 cut(s) 66, 411, 952
Tsp45I GTSAC 2 cut(s) 208, 356
TspDTI ATGAA 5 cut(s) 293, 401, 418, 881, 1235
TspRI CASTG 6 cut(s) 254, 353, 412, 450, 601, 855
Tth111I GACNNNGTC 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 92, 889
VspI ATTAAT 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 199
XapI RAATTY 2 cut(s) 1046, 1268
XceI RCATGY 5 cut(s) 160, 314, 724, 783, 903
XcmI CCANNNNNNNNNTGG 3 cut(s) 178, 1051, 1204
XhoI CTCGAG 1 cut(s) 708
XmaJI CCTAGG 1 cut(s) 784
XmiI GTMKAC 2 cut(s) 501, 904
XspI CTAG 4 cut(s) 606, 785, 1086, 1276
ZrmI AGTACT 1 cut(s) 1084
Zsp2I ATGCAT 3 cut(s) 316, 584, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.