Rmu_sc0000159.1_g000014

F-box WD-40 repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000159.1
Physical Location & Seq
Forward (+)
28586 .. 30851
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000159.1_g000014.1.cds

Sequence Viewer

Length: 1584 bp
atgctcttgaccatgacgtcctttccgcaatcttctctttgcttgactgctgccaagacctggtcagttgttccttggtttgcaaaacctggaggaccgccatcgccaaatgagatggccggtgtgactcatagacttgcattgcttcaaagccgtcggattaatgttgatcactggaagggtcactctgctaatattgatcaatgccgaaacaaggatgggttgcttctcactggcagcagcaggaagaagttcatgcgtctgtggtctctgaaagaaagccgtaaatgtgtgtataaatttcaaggagaatatcgagttccagtagactatggccctttggttgattttgactttgatgagagcaagattgttggcttggtcggctcaaagaatagtcgaatatgcatatggaggcgcagtgggatgactaggatattaaacccctttaagtgcaaggtagccaatgttctcaaattcttagaccctgaggtgccagtgacatgcctagggttgagtgatgaaggaagtcggttgtccattcttgctggtggtggttcttctatcacagtttccactgtacttttacctgatcatgagtttgcagcaaaattgcatatagcaggcgagataaagactttgagttacaacccttgcggcaatgataggacagtgtttgctggatcaagcaatggatatgtgtacggttgggacctgaggacatgtagacttttgtgggaaacgagagtgagtcggggtgctgtgtgttcaatgcagcaccggaggaatgatgcatcaactttggttgtgggtggaatggatggtgtgcttcatctagtggatcagaacacagggaaagtggttactaaaattgtcttggacaccagctactgtgtactgccaagttctaaacctgcttcaagtacaagtggtggttgttatcaaaacatggtaattcagagattgagtggaaaaaggatttcacctgatgccgacattgtcagcattcctgcacctcccatcacctgcttggcagtggggatgaagaagctggttcatcaaaacgtggctctttcaatgtcggatctgattatcataagatttatgaatctgggtcccaaccatctctgtgataactcattgttctcacattattgctcctgcagtttggatgttgataacactaatgctctccccaagacagtgcattttctttgggtggctttttcactctggacaatctggaaggcaagaagtgaagttgtctatggacatccgtctcctaaacctgttggtaaagcgcacagaattggagcagctgttgcagagtttcttggcagttccttagtggctccatatacaggtgtcccccaagctgatatcggttctgaaattggagacttggtgtgccccaaaccctgctggaatttgataaagatgagttctaatgctttggctgatttgcttgccaggcaagccgaaaggaagatggttcttggaaattggataatgcaccctccatctgattttctcaaagttctgaggagtaatggattgcctgcacctccttctggtgtgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

57.61

Weight (kDa)

9.29

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1034
AasI GACNNNNNNGTC 1 cut(s) 16
AatII GACGTC 1 cut(s) 20
Acc36I ACCTGC 2 cut(s) 922, 1034
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 60
AccI GTMKAC 2 cut(s) 327, 727
AciI CCGC 3 cut(s) 26, 98, 657
AclWI GGATC 3 cut(s) 691, 849, 1092
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 3 cut(s) 299, 476, 1426
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 4 cut(s) 582, 704, 897, 925
AfiI CCNNNNNNNGG 4 cut(s) 60, 214, 1361, 1571
AflIII ACRYGT 1 cut(s) 722
AgsI TTSAA 5 cut(s) 149, 305, 771, 921, 1077
AjnI CCWGG 3 cut(s) 59, 88, 1469
AluBI AGCT 4 cut(s) 888, 1051, 1319, 1376
AluI AGCT 4 cut(s) 888, 1051, 1319, 1376
Alw26I GTCTC 3 cut(s) 273, 1284, 1392
AlwI GGATC 3 cut(s) 691, 849, 1092
AlwNI CAGNNNCTG 1 cut(s) 891
AoxI GGCC 2 cut(s) 117, 334
ApeKI GCWGC 6 cut(s) 50, 237, 240, 605, 775, 1316
ApoI RAATTY 3 cut(s) 299, 476, 1426
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 508
AspLEI GCGC 2 cut(s) 420, 1303
AspS9I GGNCC 4 cut(s) 95, 335, 712, 1115
AsuHPI GGTGA 2 cut(s) 975, 1015
AvaII GGWCC 3 cut(s) 95, 712, 1115
AvrII CCTAGG 1 cut(s) 508
AxyI CCTNAGG 2 cut(s) 489, 716
BaeGI GKGCMC 1 cut(s) 1412
BanI GGYRCC 1 cut(s) 493
BbvI GCAGC 6 cut(s) 37, 249, 252, 617, 787, 1328
BccI CCATC 8 cut(s) 109, 109, 212, 815, 1028, 1131, 1483, 1528
BceAI ACGGC 2 cut(s) 138, 267
BciT130I CCWGG 3 cut(s) 61, 90, 1471
BclI TGATCA 3 cut(s) 169, 199, 592
BcoDI GTCTC 3 cut(s) 273, 1284, 1392
BfaI CTAG 3 cut(s) 432, 509, 836
BfmI CTRYAG 1 cut(s) 1162
BfuAI ACCTGC 2 cut(s) 922, 1034
BisI GCNGC 7 cut(s) 51, 238, 241, 606, 658, 776, 1317
BlnI CCTAGG 1 cut(s) 508
BlsI GCNGC 7 cut(s) 52, 239, 242, 607, 659, 777, 1318
Bme1390I CCNGG 3 cut(s) 61, 90, 1471
Bme18I GGWCC 3 cut(s) 95, 712, 1115
BmgT120I GGNCC 4 cut(s) 95, 335, 712, 1115
BmiI GGNNCC 5 cut(s) 495, 713, 1116, 1117, 1353
BmrFI CCNGG 3 cut(s) 61, 90, 1471
BmsI GCATC 3 cut(s) 781, 803, 979
BoxI GACNNNNGTC 1 cut(s) 1276
BpmI CTGGAG 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 74, 508
BsaWI WCCGGW 1 cut(s) 780
BsaXI ACNNNNNCTCC 6 cut(s) 406, 436, 1305, 1335, 1389, 1419
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 214, 1361, 1571
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 179, 238, 323, 497
Bse21I CCTNAGG 2 cut(s) 489, 716
Bse3DI GCAATG 3 cut(s) 140, 667, 697
BseBI CCWGG 3 cut(s) 61, 90, 1471
BseDI CCNNGG 2 cut(s) 74, 508
BseGI GGATG 6 cut(s) 223, 432, 826, 1047, 1177, 1273
BseLI CCNNNNNNNGG 4 cut(s) 60, 214, 1361, 1571
BseMI GCAATG 3 cut(s) 140, 667, 697
BseMII CTCAG 3 cut(s) 480, 707, 1532
BseNI ACTGG 4 cut(s) 179, 238, 323, 497
BseRI GAGGAG 1 cut(s) 1558
BseSI GKGCMC 1 cut(s) 1412
BseXI GCAGC 6 cut(s) 37, 249, 252, 617, 787, 1328
BsgI GTGCAG 2 cut(s) 996, 1545
BshFI GGCC 2 cut(s) 119, 336
BshNI GGYRCC 1 cut(s) 493
BsiSI CCGG 2 cut(s) 120, 781
BslFI GGGAC 3 cut(s) 725, 1101, 1352
BslI CCNNNNNNNGG 4 cut(s) 60, 214, 1361, 1571
BsmAI GTCTC 3 cut(s) 273, 1284, 1392
BsmBI CGTCTC 1 cut(s) 1284
BsmFI GGGAC 3 cut(s) 725, 1101, 1352
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 2 cut(s) 119, 336
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 1412
Bsp143I GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
BspACI CCGC 3 cut(s) 26, 98, 657
BspANI GGCC 2 cut(s) 119, 336
BspCNI CTCAG 3 cut(s) 481, 708, 1533
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 5 cut(s) 495, 713, 1116, 1117, 1353
BspMAI CTGCAG 1 cut(s) 1166
BspMI ACCTGC 2 cut(s) 922, 1034
BspPI GGATC 3 cut(s) 691, 849, 1092
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 3 cut(s) 140, 667, 697
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 4 cut(s) 179, 238, 323, 497
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 74, 508
BssMI GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 74, 508
Bst2UI CCWGG 3 cut(s) 61, 90, 1471
Bst4CI ACNGT 6 cut(s) 571, 580, 673, 707, 893, 1204
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstC8I GCNNGC 4 cut(s) 625, 1467, 1476, 1560
BstDEI CTNAG 5 cut(s) 481, 489, 716, 1345, 1541
BstF5I GGATG 6 cut(s) 223, 432, 826, 1047, 1177, 1273
BstHHI GCGC 2 cut(s) 420, 1303
BstKTI GATC 6 cut(s) 172, 202, 595, 686, 844, 1087
BstMAI GTCTC 3 cut(s) 273, 1284, 1392
BstMBI GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 384, 1322, 1471, 1475
BstNI CCWGG 3 cut(s) 61, 90, 1471
BstNSI RCATGY 2 cut(s) 507, 726
BstPAI GACNNNNGTC 1 cut(s) 1276
BstSCI CCNGG 3 cut(s) 59, 88, 1469
BstSFI CTRYAG 1 cut(s) 1162
BstSLI GKGCMC 1 cut(s) 1412
BstV1I GCAGC 6 cut(s) 37, 249, 252, 617, 787, 1328
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
Bsu36I CCTNAGG 2 cut(s) 489, 716
BsuRI GGCC 2 cut(s) 119, 336
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 6 cut(s) 223, 432, 826, 1047, 1177, 1273
BtsI GCAGTG 2 cut(s) 427, 1041
BtsIMutI CAGTG 8 cut(s) 172, 231, 427, 504, 576, 678, 1041, 1209
BveI ACCTGC 2 cut(s) 922, 1034
Cac8I GCNNGC 4 cut(s) 625, 1467, 1476, 1560
CaiI CAGNNNCTG 1 cut(s) 891
CciI TCATGA 1 cut(s) 595
CfoI GCGC 2 cut(s) 420, 1303
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 95, 335, 712, 1115
CseI GACGC 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 59
Csp6I GTAC 4 cut(s) 581, 703, 896, 924
CviAII CATG 6 cut(s) 13, 256, 504, 596, 723, 949
CviQI GTAC 4 cut(s) 581, 703, 896, 924
DdeI CTNAG 5 cut(s) 481, 489, 716, 1345, 1541
DpnI GATC 6 cut(s) 171, 201, 594, 685, 843, 1086
DpnII GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 74, 508
Eco31I GGTCTC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 1381
Eco47I GGWCC 3 cut(s) 95, 712, 1115
Eco81I CCTNAGG 2 cut(s) 489, 716
EcoO109I RGGNCCY 2 cut(s) 712, 1115
EcoRII CCWGG 3 cut(s) 59, 88, 1469
EcoRV GATATC 1 cut(s) 1381
EcoT14I CCWWGG 2 cut(s) 74, 508
EcoT22I ATGCAT 2 cut(s) 410, 796
ErhI CCWWGG 2 cut(s) 74, 508
Esp3I CGTCTC 1 cut(s) 1284
FaeI CATG 6 cut(s) 16, 259, 507, 599, 726, 952
FaqI GGGAC 3 cut(s) 725, 1101, 1352
FatI CATG 6 cut(s) 12, 255, 503, 595, 722, 948
FauNDI CATATG 1 cut(s) 410
FbaI TGATCA 3 cut(s) 169, 199, 592
FblI GTMKAC 2 cut(s) 327, 727
Fnu4HI GCNGC 7 cut(s) 51, 238, 241, 606, 658, 776, 1317
FokI GGATG 6 cut(s) 230, 439, 833, 1054, 1184, 1260
Fsp4HI GCNGC 7 cut(s) 51, 238, 241, 606, 658, 776, 1317
FspBI CTAG 3 cut(s) 432, 509, 836
GlaI GCGC 2 cut(s) 419, 1302
GluI GCNGC 7 cut(s) 51, 238, 241, 606, 658, 776, 1317
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 119, 336
HapII CCGG 2 cut(s) 120, 781
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 420, 1303
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 6 cut(s) 16, 259, 507, 599, 726, 952
Hin6I GCGC 2 cut(s) 418, 1301
HinP1I GCGC 2 cut(s) 418, 1301
HinfI GANTC 3 cut(s) 127, 751, 1108
HpaII CCGG 2 cut(s) 120, 781
HphI GGTGA 2 cut(s) 975, 1015
Hpy166II GTNNAC 4 cut(s) 328, 703, 728, 896
Hpy188I TCNGA 9 cut(s) 159, 273, 846, 960, 1084, 1089, 1390, 1525, 1542
Hpy188III TCNNGA 4 cut(s) 7, 596, 1234, 1243
Hpy8I GTNNAC 4 cut(s) 328, 703, 728, 896
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 4 cut(s) 172, 518, 1240, 1578
HpyCH4III ACNGT 6 cut(s) 571, 580, 673, 707, 893, 1204
HpyCH4IV ACGT 2 cut(s) 17, 1065
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 1322, 1471, 1475
HpyF3I CTNAG 5 cut(s) 481, 489, 716, 1345, 1541
HpySE526I ACGT 2 cut(s) 17, 1065
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 6 cut(s) 16, 259, 507, 599, 726, 952
HspAI GCGC 2 cut(s) 418, 1301
KflI GGGWCCC 1 cut(s) 1115
Ksp22I TGATCA 3 cut(s) 169, 199, 592
Kzo9I GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
LmnI GCTCC 3 cut(s) 1163, 1313, 1357
Lsp1109I GCAGC 6 cut(s) 37, 249, 252, 617, 787, 1328
LweI GCATC 3 cut(s) 781, 803, 979
MabI ACCWGGT 1 cut(s) 59
MaeI CTAG 3 cut(s) 432, 509, 836
MaeII ACGT 2 cut(s) 17, 1065
MaeIII GTNAC 5 cut(s) 124, 182, 499, 644, 862
MalI GATC 6 cut(s) 171, 201, 594, 685, 843, 1086
MboI GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
MboII GAAGA 5 cut(s) 24, 259, 552, 1057, 1498
MflI RGATCY 1 cut(s) 1084
MhlI GDGCHC 1 cut(s) 1412
MluCI AATT 9 cut(s) 299, 476, 611, 870, 954, 1308, 1392, 1426, 1501
MlyI GAGTC 2 cut(s) 121, 760
MmeI TCCRAC 2 cut(s) 137, 1062
MnlI CCTC 9 cut(s) 86, 408, 484, 711, 777, 1026, 1527, 1536, 1575
Mph1103I ATGCAT 2 cut(s) 410, 796
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 3 cut(s) 162, 440, 450
MslI CAYNNNNRTG 1 cut(s) 1128
MspA1I CMGCKG 1 cut(s) 1319
MspI CCGG 2 cut(s) 120, 781
MspR9I CCNGG 3 cut(s) 61, 90, 1471
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 3 cut(s) 61, 90, 1471
MwoI GCNNNNNNNGC 4 cut(s) 384, 1322, 1471, 1475
NdeI CATATG 1 cut(s) 410
NdeII GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
NlaIII CATG 6 cut(s) 16, 259, 507, 599, 726, 952
NlaIV GGNNCC 5 cut(s) 495, 713, 1116, 1117, 1353
NmuCI GTSAC 3 cut(s) 124, 182, 499
NsiI ATGCAT 2 cut(s) 410, 796
NspI RCATGY 2 cut(s) 507, 726
PagI TCATGA 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 1034
PciI ACATGT 1 cut(s) 722
PctI GAATGC 1 cut(s) 1005
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 1108
PflFI GACNNNGTC 2 cut(s) 61, 998
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 7 cut(s) 52, 239, 242, 607, 659, 777, 1318
PleI GAGTC 2 cut(s) 121, 759
PpsI GAGTC 2 cut(s) 121, 759
PpuMI RGGWCCY 2 cut(s) 712, 1115
PscI ACATGT 1 cut(s) 722
PshAI GACNNNNGTC 1 cut(s) 1276
PshBI ATTAAT 1 cut(s) 162
Psp5II RGGWCCY 2 cut(s) 712, 1115
Psp6I CCWGG 3 cut(s) 59, 88, 1469
PspGI CCWGG 3 cut(s) 59, 88, 1469
PspN4I GGNNCC 5 cut(s) 495, 713, 1116, 1117, 1353
PspPI GGNCC 4 cut(s) 95, 335, 712, 1115
PspPPI RGGWCCY 2 cut(s) 712, 1115
PsrI GAACNNNNNNTAC 2 cut(s) 453, 485
PstI CTGCAG 1 cut(s) 1166
PstNI CAGNNNCTG 1 cut(s) 891
PsuI RGATCY 1 cut(s) 1084
PsyI GACNNNGTC 2 cut(s) 61, 998
PvuII CAGCTG 1 cut(s) 1319
RsaI GTAC 4 cut(s) 582, 704, 897, 925
RsaNI GTAC 4 cut(s) 581, 703, 896, 924
RseI CAYNNNNRTG 1 cut(s) 1128
SaqAI TTAA 3 cut(s) 162, 440, 450
SatI GCNGC 7 cut(s) 51, 238, 241, 606, 658, 776, 1317
Sau3AI GATC 6 cut(s) 169, 199, 592, 683, 841, 1084
Sau96I GGNCC 4 cut(s) 95, 335, 712, 1115
SchI GAGTC 2 cut(s) 121, 760
ScrFI CCNGG 3 cut(s) 61, 90, 1471
SduI GDGCHC 1 cut(s) 1412
SexAI ACCWGGT 1 cut(s) 59
SfaNI GCATC 3 cut(s) 781, 803, 979
SfcI CTRYAG 1 cut(s) 1162
SinI GGWCC 3 cut(s) 95, 712, 1115
SmiMI CAYNNNNRTG 1 cut(s) 1128
Sse9I AATT 9 cut(s) 299, 476, 611, 870, 954, 1308, 1392, 1426, 1501
SsiI CCGC 3 cut(s) 26, 98, 657
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 432, 509, 836
StyD4I CCNGG 3 cut(s) 59, 88, 1469
StyI CCWWGG 2 cut(s) 74, 508
TaaI ACNGT 6 cut(s) 571, 580, 673, 707, 893, 1204
TaiI ACGT 2 cut(s) 20, 1068
TaqI TCGA 2 cut(s) 316, 400
TasI AATT 9 cut(s) 299, 476, 611, 870, 954, 1308, 1392, 1426, 1501
TatI WGTACW 3 cut(s) 580, 895, 923
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 1 cut(s) 1108
Tru1I TTAA 3 cut(s) 162, 440, 450
Tru9I TTAA 3 cut(s) 162, 440, 450
TscAI CASTG 8 cut(s) 179, 238, 427, 504, 583, 678, 1041, 1209
TseFI GTSAC 3 cut(s) 124, 182, 499
TseI GCWGC 6 cut(s) 50, 237, 240, 605, 775, 1316
Tsp45I GTSAC 3 cut(s) 124, 182, 499
TspDTI ATGAA 6 cut(s) 244, 537, 821, 1046, 1058, 1121
TspGWI ACGGA 1 cut(s) 1266
TspRI CASTG 8 cut(s) 179, 238, 427, 504, 583, 678, 1041, 1209
Tth111I GACNNNGTC 2 cut(s) 61, 998
Van91I CCANNNNNTGG 1 cut(s) 60
VpaK11BI GGWCC 3 cut(s) 95, 712, 1115
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 3 cut(s) 299, 476, 1426
XceI RCATGY 2 cut(s) 507, 726
XcmI CCANNNNNNNNNTGG 1 cut(s) 1027
XmaJI CCTAGG 1 cut(s) 508
XmiI GTMKAC 2 cut(s) 327, 727
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 3 cut(s) 432, 509, 836
ZraI GACGTC 1 cut(s) 18
Zsp2I ATGCAT 2 cut(s) 410, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.