Prupe.6G122300_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003058
Physical Location & Seq
Reverse (-)
9103447 .. 9103824
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G122300.1

Sequence Viewer

Length: 378 bp
ATGGAGCATATTTTATTTCTTTGTCCGCAGGTGAAGGGTGTGTGGTTTGGCGCACCTCTGAGCTACGAACCGGAGATACAGAGAATCTCCAAGTTCGATGTTTGGCTTTTGGCCCTGAGCTCCAATTATTCAATTCATAATCATGTGCGAAAGGAAGTGTTGGCATCTGTTAGCATTATATGTTGGGAGATTTGGAAGGAAAGATGCAATGCTTTTCTTCTCACATTTCCCTCCCGATCCTGGTATTGTGCTCAGGAAATCAATATCTTACCACATTTGGGTCGCTGGATTCAAAATATTCCCACATTTGGGCTTAAGCAGGATCCAATCATTATTAGTGCCTTTACCTCGTACAAATATTTGAAAAATCATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

126

Amino Acids

14.71

Weight (kDa)

8.73

Isoelectric Point (pI)

63.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 19
AciI CCGC 1 cut(s) 26
AclWI GGATC 3 cut(s) 231, 317, 330
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 4 cut(s) 240, 278, 308, 309
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 3 cut(s) 132, 293, 364
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 2 cut(s) 63, 120
AluI AGCT 2 cut(s) 63, 120
Alw21I GWGCWC 2 cut(s) 122, 253
AlwI GGATC 3 cut(s) 231, 317, 330
AoxI GGCC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 43
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 122, 253
BciT130I CCWGG 1 cut(s) 241
BfrI CTTAAG 1 cut(s) 314
BfuAI ACCTGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 173, 194
Bpu10I CCTNAGC 2 cut(s) 116, 252
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 278, 308, 309
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 241
BseLI CCNNNNNNNGG 4 cut(s) 240, 278, 308, 309
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 50, 107, 266
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 122, 253
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 4 cut(s) 240, 278, 308, 309
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 122, 253
Bsp143I GATC 2 cut(s) 236, 322
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 3 cut(s) 51, 108, 265
BspLI GGNNCC 1 cut(s) 324
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 3 cut(s) 231, 317, 330
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 214
BssMI GATC 2 cut(s) 236, 322
Bst2UI CCWGG 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 314
BstDEI CTNAG 3 cut(s) 59, 116, 252
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 239, 325
BstMBI GATC 2 cut(s) 236, 322
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 113
BveI ACCTGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 352
CviAII CATG 1 cut(s) 143
CviJI RGCY 5 cut(s) 63, 106, 113, 120, 313
CviKI_1 RGCY 5 cut(s) 63, 106, 113, 120, 313
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 59, 116, 252
DpnI GATC 2 cut(s) 238, 324
DpnII GATC 2 cut(s) 236, 322
Ecl136II GAGCTC 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 1 cut(s) 146
FaiI YATR 6 cut(s) 9, 138, 144, 179, 181, 372
FatI CATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 122
GlaI GCGC 1 cut(s) 52
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 84, 289
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 234, 254
HpyAV CCTTC 2 cut(s) 28, 190
HpyCH4V TGCA 1 cut(s) 207
HpyF3I CTNAG 3 cut(s) 59, 116, 252
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 236, 322
LmnI GCTCC 2 cut(s) 4, 125
LpnPI CCDG 8 cut(s) 14, 84, 128, 226, 239, 253, 271, 305
LweI GCATC 2 cut(s) 173, 194
MalI GATC 2 cut(s) 238, 324
MboI GATC 2 cut(s) 236, 322
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 122, 253
MluCI AATT 2 cut(s) 124, 132
MnlI CCTC 3 cut(s) 66, 241, 358
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 141
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
NdeII GATC 2 cut(s) 236, 322
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 324
PaqCI CACCTGC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 84, 289
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 60, 92
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 2 cut(s) 236, 322
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 122, 253
SetI ASST 5 cut(s) 33, 58, 65, 122, 350
SfaNI GCATC 2 cut(s) 173, 194
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 124, 132
SsiI CCGC 1 cut(s) 26
SspI AATATT 2 cut(s) 298, 359
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 239
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 124, 132
TfiI GAWTC 2 cut(s) 84, 289
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 125
Vha464I CTTAAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.