Rh6CG266500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003058
Physical Location & Seq
Reverse (-)
43988771 .. 43989124
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG266500.1

Sequence Viewer

Length: 354 bp
ATGTCGGATCTGGTTATCATAAGATTTATGAATCTGGGTCCAAACCATCTCTGTGATTACTCATTGTTCTCACATTATTGCTCCTGCAGTTTGGATATTGATAACACTAATGCTCTCCCCAAGACAGTGTATTTTCTTTGGGTGGCTTTTTCACTCTGGACAATCTGGAGGGCAAGAAGTGAAGTTGTCTATGGACATCCGTCTCCTAAACCTGTTGGTAAAGCGCACAGAATTGGAGCAGCTGTTGCAGAGTTTCTTGGCAGTTCCTTAGTGGCTCCATATACAGGTGTCCCCCAAGCTGATATCGGTTCTGAAATTGGAGACTTGGTGTGCCCCAAACCCTGGTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

6.38

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 342
AclWI GGATC 1 cut(s) 15
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 284, 342
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 242, 299
AluI AGCT 2 cut(s) 242, 299
Alw26I GTCTC 2 cut(s) 207, 315
AlwI GGATC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 207, 315
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 39, 276
BmrFI CCNGG 1 cut(s) 343
BoxI GACNNNNGTC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 341
BsaXI ACNNNNNCTCC 4 cut(s) 228, 258, 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 342
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 284, 342
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 1 cut(s) 251
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 284, 342
BsmAI GTCTC 2 cut(s) 207, 315
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 39, 276
BspMAI CTGCAG 1 cut(s) 89
BspPI GGATC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 207, 315
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 132
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 346
CviJI RGCY 4 cut(s) 146, 242, 275, 299
CviKI_1 RGCY 4 cut(s) 146, 242, 275, 299
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 268
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 341
EcoRV GATATC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 207
FaiI YATR 5 cut(s) 20, 29, 192, 280, 282
FaqI GGGAC 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 187
HhaI GCGC 1 cut(s) 226
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 7, 313
Hpy188III TCNNGA 2 cut(s) 157, 166
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 87, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 268
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 3 cut(s) 86, 236, 280
LpnPI CCDG 7 cut(s) 20, 97, 142, 151, 225, 270, 328
Lsp1109I GCAGC 1 cut(s) 251
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 3 cut(s) 231, 315, 349
MnlI CCTC 1 cut(s) 162
MseI TTAA 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 7
NlaIV GGNNCC 2 cut(s) 39, 276
PfeI GAWTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 1 cut(s) 241
PshAI GACNNNNGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 39, 276
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 335
SetI ASST 4 cut(s) 214, 244, 289, 301
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 3 cut(s) 231, 315, 349
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 127
TasI AATT 3 cut(s) 231, 315, 349
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.