Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006537.1

Orthogroup ID

OG0011988

Physical Location & Seq

Genomic Coordinates Reverse (-)

30278 .. 32016

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atgttggcttctgacccatctcagcatgcagaaatcaactcggtttctgagtccgcaacatttgagacaaaccagttggtgcttgttccagtcacttgttcttgctcaggtcagtactatcagctaaacacatatcatgttgtggttcatggtgatacattttttgtaattggagataatacatttcaaggcctcttaacatgtcaagctatgatgcagcagaacagtaatctcaccacaaagaatttgtatactgatacaggaaggactcttgaagccaatgagctttcagagaaattccctaacatttgtcccttcaccatgtacacttttagttcctttaaaaaaaaacctccatctagttctcaaaccatagagccaccttcatcatcactgccatcacctccagctacctcgaagaactcaaagaaaacatgggtttatgtagttactggggctattgtaataggtggtgttgttttggtaataggcttcctcatcttcttcacattcttccgcagaagaaagtctatatctagagacatagctcacatggctctatccctcaaagtttacaaatttgaggaactgcaaagtgcaacagagaacttcagctccagttgtttgatcaaaggatctgtttttcgtggcatatttgatgggaatgtggctgcaatcaagaaaatgaatgggaatgtgtccaaagaaatcaatttgctaaacaaaatcaaccattctaatttgattcgtctctccggggtttgctttaatgatggtcattgcttcactacacctcctcatgtccacaaggatataaagagcagtaacattcttcttgacagtgatttcagggccaagattgcgaattttggtctagcaaggtcaactggtgctcaagacggtcacttttctttgacgaatcacattgttggaacgatagggtacatggctcctgagtacttagaaaatggtttgatctccacaaagcttgatgtctacgcatttgtggcactcatgttggaattactcatcggaaaagaggttgcggtgctttttgaacaaaatgtgcacttgtctgatgtactgaactctttgcttaacaatgaagatggaggacagagtttgaggcagttcatggatcctactttgcaagataattatcctcaagagtttgctatttttgtgatcaggttgattgatagttgcttgaagaaaaacccaggatctcgcccagacatgaatgagatggtgcagtttctctcaagaaccatgagtaattcactaacttgggaattgtcaagcaataccttaggctaccaaggttcagcaggagttcttgatggtacagaaactggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002237 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046677 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071216 GO:0071219 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0098542 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

452

Amino Acids

49.87

Weight (kDa)

6.27

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	2 - 35	9.6e-07	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	39 - 86	1.5e-14	LYK3/4/5 LysM2 domain
PK_Tyr_Ser-Thr	PF07714	267 - 420	9.6e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	268 - 418	1.8e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23770
fragaria_vesca	FvH4_1g14190
malus_domestica	MD02G1156000.v1.1
prunus_persica	Prupe.7G147600_v2.0.a1
pyrus_communis	pycom02g12330
rosa_chinensis	RchiOBHm_Chr2g0102861
rosa_laevigata	RLG00000017185
rosa_multiflora	Rmu_sc0000388.1_g000048 Rmu_sc0000388.1_g000056 Rmu_sc0000388.1_g000057 Rmu_sc0006537.1_g000006
rosa_roxburghii	Rroxscaffold_2G00140240
rosa_rugosa	Rorug02G0110200
rosa_samantha	Rh2AG158600 Rh2BG165000 Rh2CG164700 Rh2DG163800
rosa_wichuraiana	Rw2G012340 Rw2G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	251, 996
AciI	CCGC	3 cut(s)	54, 517, 1046
AclWI	GGATC	4 cut(s)	643, 1133, 1146, 1231
AcsI	RAATTY	4 cut(s)	244, 296, 578, 865
AcuI	CTGAAG	1 cut(s)	595
AfaI	GTAC	6 cut(s)	116, 326, 944, 959, 1083, 1345
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	188, 275, 1058, 1210
AjnI	CCWGG	1 cut(s)	1219
AloI	GAACNNNNNNTCC	2 cut(s)	599, 631
AluBI	AGCT	7 cut(s)	124, 209, 286, 410, 548, 615, 988
AluI	AGCT	7 cut(s)	124, 209, 286, 410, 548, 615, 988
Alw21I	GWGCWC	2 cut(s)	895, 1071
Alw26I	GTCTC	3 cut(s)	59, 534, 755
Alw44I	GTGCAC	1 cut(s)	1067
AlwI	GGATC	4 cut(s)	643, 1133, 1146, 1231
AlwNI	CAGNNNCTG	1 cut(s)	1352
AoxI	GGCC	2 cut(s)	190, 852
ApaLI	GTGCAC	1 cut(s)	1067
ApeKI	GCWGC	2 cut(s)	217, 671
ApoI	RAATTY	4 cut(s)	244, 296, 578, 865
AspS9I	GGNCC	1 cut(s)	852
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	4 cut(s)	164, 226, 310, 393
AxyI	CCTNAGG	1 cut(s)	1309
BaeGI	GKGCMC	1 cut(s)	1071
BamHI	GGATCC	1 cut(s)	1138
Bbv12I	GWGCWC	2 cut(s)	895, 1071
BbvI	GCAGC	2 cut(s)	229, 658
BccI	CCATC	8 cut(s)	25, 364, 406, 653, 767, 1103, 1240, 1334
BciT130I	CCWGG	1 cut(s)	1221
BclI	TGATCA	2 cut(s)	627, 1185
BcnI	CCSGG	1 cut(s)	757
BcoDI	GTCTC	3 cut(s)	59, 534, 755
BfaI	CTAG	3 cut(s)	360, 537, 875
BisI	GCNGC	2 cut(s)	218, 672
BlsI	GCNGC	2 cut(s)	219, 673
BmcAI	AGTACT	2 cut(s)	116, 959
Bme1390I	CCNGG	2 cut(s)	757, 1221
BmgT120I	GGNCC	1 cut(s)	852
BmiI	GGNNCC	2 cut(s)	951, 1140
BmrFI	CCNGG	2 cut(s)	757, 1221
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	462
BpmI	CTGGAG	2 cut(s)	390, 601
Bpu10I	CCTNAGC	1 cut(s)	106
BpuEI	CTTGAG	3 cut(s)	879, 1149, 1246
BpuMI	CCSGG	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaJI	CCNNGG	3 cut(s)	756, 1219, 1318
BsaXI	ACNNNNNCTCC	4 cut(s)	599, 629, 778, 808
Bse1I	ACTGG	6 cut(s)	73, 89, 457, 618, 892, 1357
Bse21I	CCTNAGG	1 cut(s)	1309
Bse3DI	GCAATG	1 cut(s)	778
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	1221
BseDI	CCNNGG	3 cut(s)	756, 1219, 1318
BseJI	GATNNNNATC	1 cut(s)	1158
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	4 cut(s)	35, 39, 120, 945
BseNI	ACTGG	6 cut(s)	73, 89, 457, 618, 892, 1357
BseRI	GAGGAG	1 cut(s)	786
BseSI	GKGCMC	1 cut(s)	1071
BseXI	GCAGC	2 cut(s)	229, 658
BsgI	GTGCAG	1 cut(s)	1271
BshFI	GGCC	2 cut(s)	192, 854
BsiHKAI	GWGCWC	2 cut(s)	895, 1071
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	297
BsmAI	GTCTC	3 cut(s)	59, 534, 755
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	192, 854
Bsp1286I	GDGCHC	2 cut(s)	895, 1071
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
BspACI	CCGC	3 cut(s)	54, 517, 1046
BspANI	GGCC	2 cut(s)	192, 854
BspCNI	CTCAG	4 cut(s)	34, 40, 119, 946
BspLI	GGNNCC	2 cut(s)	951, 1140
BspPI	GGATC	4 cut(s)	643, 1133, 1146, 1231
BsrDI	GCAATG	1 cut(s)	778
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	6 cut(s)	73, 89, 457, 618, 892, 1357
BssECI	CCNNGG	3 cut(s)	756, 1219, 1318
BssMI	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
BssNAI	GTATAC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	1318
Bst1107I	GTATAC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	1221
Bst4CI	ACNGT	3 cut(s)	227, 842, 902
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	6 cut(s)	21, 48, 106, 954, 961, 1309
BstKTI	GATC	6 cut(s)	630, 638, 978, 1141, 1188, 1226
BstMAI	GTCTC	3 cut(s)	59, 534, 755
BstMBI	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 860, 1007
BstNI	CCWGG	1 cut(s)	1221
BstNSI	RCATGY	2 cut(s)	29, 204
BstSCI	CCNGG	2 cut(s)	755, 1219
BstSLI	GKGCMC	1 cut(s)	1071
BstV1I	GCAGC	2 cut(s)	229, 658
BstX2I	RGATCY	3 cut(s)	635, 1138, 1223
BstYI	RGATCY	3 cut(s)	635, 1138, 1223
BstZ17I	GTATAC	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	1309
BsuRI	GGCC	2 cut(s)	192, 854
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	392, 847
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	1352
Cfr13I	GGNCC	1 cut(s)	852
Csp6I	GTAC	6 cut(s)	115, 325, 943, 958, 1082, 1344
CspCI	CAANNNNNGTGG	2 cut(s)	970, 1005
CviQI	GTAC	6 cut(s)	115, 325, 943, 958, 1082, 1344
DdeI	CTNAG	6 cut(s)	21, 48, 106, 954, 961, 1309
DpnI	GATC	6 cut(s)	629, 637, 977, 1140, 1187, 1225
DpnII	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
DraI	TTTAAA	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	1318
Eco147I	AGGCCT	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	595
Eco81I	CCTNAGG	1 cut(s)	1309
EcoRII	CCWGG	1 cut(s)	1219
EcoT14I	CCWWGG	1 cut(s)	1318
ErhI	CCWWGG	1 cut(s)	1318
Esp3I	CGTCTC	1 cut(s)	755
FaqI	GGGAC	1 cut(s)	297
FbaI	TGATCA	2 cut(s)	627, 1185
FblI	GTMKAC	2 cut(s)	251, 996
Fnu4HI	GCNGC	2 cut(s)	218, 672
Fsp4HI	GCNGC	2 cut(s)	218, 672
FspBI	CTAG	3 cut(s)	360, 537, 875
GluI	GCNGC	2 cut(s)	218, 672
GsuI	CTGGAG	2 cut(s)	390, 601
HaeIII	GGCC	2 cut(s)	192, 854
HapII	CCGG	1 cut(s)	756
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	4 cut(s)	50, 268, 745, 919
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	4 cut(s)	164, 226, 310, 393
Hpy166II	GTNNAC	7 cut(s)	252, 327, 574, 805, 885, 997, 1069
Hpy188I	TCNGA	5 cut(s)	13, 49, 292, 1034, 1078
Hpy188III	TCNNGA	9 cut(s)	272, 537, 679, 836, 896, 953, 1166, 1263, 1337
Hpy8I	GTNNAC	7 cut(s)	252, 327, 574, 805, 885, 997, 1069
HpyAV	CCTTC	3 cut(s)	258, 325, 393
HpyCH4III	ACNGT	3 cut(s)	227, 842, 902
HpyCH4V	TGCA	8 cut(s)	29, 217, 592, 599, 674, 1069, 1150, 1252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 860, 1007
HpyF3I	CTNAG	6 cut(s)	21, 48, 106, 954, 961, 1309
Ksp22I	TGATCA	2 cut(s)	627, 1185
Kzo9I	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
LmnI	GCTCC	2 cut(s)	620, 955
Lsp1109I	GCAGC	2 cut(s)	229, 658
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	3 cut(s)	360, 537, 875
MaeIII	GTNAC	4 cut(s)	91, 448, 824, 902
MalI	GATC	6 cut(s)	629, 637, 977, 1140, 1187, 1225
MboI	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
MboII	GAAGA	8 cut(s)	430, 493, 496, 505, 534, 824, 1118, 1222
MflI	RGATCY	3 cut(s)	635, 1138, 1223
MhlI	GDGCHC	2 cut(s)	895, 1071
MlyI	GAGTC	2 cut(s)	59, 262
MmeI	TCCRAC	2 cut(s)	910, 999
MseI	TTAA	4 cut(s)	197, 342, 768, 1098
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	2 cut(s)	757, 1221
MvaI	CCWGG	1 cut(s)	1221
MwoI	GCNNNNNNNGC	3 cut(s)	554, 860, 1007
NciI	CCSGG	1 cut(s)	757
NdeII	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
NlaIV	GGNNCC	2 cut(s)	951, 1140
NmuCI	GTSAC	2 cut(s)	91, 902
NspI	RCATGY	2 cut(s)	29, 204
PaeI	GCATGC	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	192
PciI	ACATGT	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	745, 919
PkrI	GCNGC	2 cut(s)	219, 673
PleI	GAGTC	2 cut(s)	58, 262
PpsI	GAGTC	2 cut(s)	58, 262
PscI	ACATGT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	1219
PspGI	CCWGG	1 cut(s)	1219
PspN4I	GGNNCC	2 cut(s)	951, 1140
PspPI	GGNCC	1 cut(s)	852
PstNI	CAGNNNCTG	1 cut(s)	1352
PsuI	RGATCY	3 cut(s)	635, 1138, 1223
RsaI	GTAC	6 cut(s)	116, 326, 944, 959, 1083, 1345
RsaNI	GTAC	6 cut(s)	115, 325, 943, 958, 1082, 1344
SaqAI	TTAA	4 cut(s)	197, 342, 768, 1098
SatI	GCNGC	2 cut(s)	218, 672
Sau3AI	GATC	6 cut(s)	627, 635, 975, 1138, 1185, 1223
Sau96I	GGNCC	1 cut(s)	852
ScaI	AGTACT	2 cut(s)	116, 959
SchI	GAGTC	2 cut(s)	59, 262
ScrFI	CCNGG	2 cut(s)	757, 1221
SduI	GDGCHC	2 cut(s)	895, 1071
SfaNI	GCATC	1 cut(s)	204
SmlI	CTYRAG	3 cut(s)	894, 1164, 1261
SmoI	CTYRAG	3 cut(s)	894, 1164, 1261
SphI	GCATGC	1 cut(s)	29
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	54, 517, 1046
SspMI	CTAG	3 cut(s)	360, 537, 875
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	755, 1219
StyI	CCWWGG	1 cut(s)	1318
TaaI	ACNGT	3 cut(s)	227, 842, 902
TaqI	TCGA	1 cut(s)	416
TatI	WGTACW	4 cut(s)	114, 324, 957, 1081
TfiI	GAWTC	2 cut(s)	745, 919
Tru1I	TTAA	4 cut(s)	197, 342, 768, 1098
Tru9I	TTAA	4 cut(s)	197, 342, 768, 1098
TscAI	CASTG	2 cut(s)	399, 847
TseFI	GTSAC	2 cut(s)	91, 902
TseI	GCWGC	2 cut(s)	217, 671
Tsp45I	GTSAC	2 cut(s)	91, 902
TspDTI	ATGAA	6 cut(s)	137, 375, 701, 1119, 1123, 1253
TspRI	CASTG	2 cut(s)	399, 847
VneI	GTGCAC	1 cut(s)	1067
XapI	RAATTY	4 cut(s)	244, 296, 578, 865
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	2 cut(s)	29, 204
XmiI	GTMKAC	2 cut(s)	251, 996
XspI	CTAG	3 cut(s)	360, 537, 875
ZrmI	AGTACT	2 cut(s)	116, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.