Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0018678

Physical Location & Seq

Genomic Coordinates Forward (+)

47726 .. 48284

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgggtttggaggaacgcgtgttttttgggaattggatgatccccggaatgtgtttgatgaaatgcttgagagaaatactgtgtcgtggactagttcgatttgtgcttatggtgaccatcgtgtgtgtcatttctgctcgtgcaaagttgaaggatgttgcgctgagtgacgtggttttgtcaaattatgtgcgccagggactggctggtgtagcagtttcggtgattggtgaaatgctacaacagggcctaagacccgacaaggttgccatgttatctgcaatttcaggttgtgcacaactgagtgattctctctctggaaagtgccgccatggttatgttctaaggaatgaactagaaggttgggataccatttgtagtgccatgattgatatgcacatgaggtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

8.54

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018678)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006648.1_g000008 Rmu_ssc0000272.1_g000010
rosa_roxburghii	Rroxscaffold_6G00418870
rosa_samantha	Rh1BG151200 Rh4DG055800 Rh5BG513000 Rh5CG536700 Rh5DG525100 Rh6DG312000 Rh7CG250900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	247
ApaLI	GTGCAC	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	163, 195
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	124, 235, 242
BaeGI	GKGCMC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	2 cut(s)	92, 356
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	45, 197
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	45, 197
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	43, 196, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	43, 196, 331
BseGI	GGATG	2 cut(s)	42, 160
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	155, 293
BseNI	ACTGG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	156, 294
BspFNI	CGCG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	43, 196, 331
BssMI	GATC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	81
BstDEI	CTNAG	4 cut(s)	164, 251, 302, 344
BstDSI	CCRYGG	1 cut(s)	331
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	42, 160
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	163, 195
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	43, 195
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	42, 160
CaiI	CAGNNNCTG	1 cut(s)	202
CfoI	GCGC	2 cut(s)	163, 195
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	4 cut(s)	271, 332, 385, 400
CviJI	RGCY	2 cut(s)	206, 249
CviKI_1	RGCY	2 cut(s)	206, 249
DdeI	CTNAG	4 cut(s)	164, 251, 302, 344
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	4 cut(s)	274, 335, 388, 403
FaiI	YATR	8 cut(s)	110, 189, 272, 333, 339, 386, 395, 401
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	4 cut(s)	270, 331, 384, 399
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	2 cut(s)	49, 167
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	2 cut(s)	92, 356
GlaI	GCGC	2 cut(s)	162, 194
GluI	GCNGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	163, 195
Hin1II	CATG	4 cut(s)	274, 335, 388, 403
Hin6I	GCGC	2 cut(s)	161, 193
HinP1I	GCGC	2 cut(s)	161, 193
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	124, 235, 242
Hpy166II	GTNNAC	2 cut(s)	89, 296
Hpy188III	TCNNGA	2 cut(s)	318, 408
Hpy8I	GTNNAC	2 cut(s)	89, 296
HpyAV	CCTTC	2 cut(s)	145, 353
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	143, 281, 296, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	4 cut(s)	164, 251, 302, 344
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	274, 335, 388, 403
HspAI	GCGC	2 cut(s)	161, 193
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	58, 182, 188, 192, 209, 230, 273, 303
MaeI	CTAG	2 cut(s)	92, 356
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	112, 167
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	3 cut(s)	31, 184, 282
MluI	ACGCGT	1 cut(s)	16
MnlI	CCTC	2 cut(s)	4, 396
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	45, 197
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	4 cut(s)	274, 335, 388, 403
NmuCI	GTSAC	2 cut(s)	112, 167
PfeI	GAWTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	336
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	45, 197
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	5 cut(s)	174, 267, 292, 364, 407
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	3 cut(s)	31, 184, 282
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	92, 356
StyD4I	CCNGG	2 cut(s)	43, 195
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	31, 184, 282
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	112, 167
Tsp45I	GTSAC	2 cut(s)	112, 167
TspDTI	ATGAA	2 cut(s)	74, 366
Van91I	CCANNNNNTGG	1 cut(s)	202
VneI	GTGCAC	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	2 cut(s)	92, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.