Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018678

Physical Location & Seq

Genomic Coordinates Reverse (-)

75089369 .. 75106902

Gene Structure 17534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG536700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTTCGGGTTTCGATTCCGGGGAGAGAGAGATGTGTGGCCGATTCCGGTTCCGGCGACGAGGTCGAAGAATCCGATTATTTGGGCGTGGGATCGCCGGGAGCGGGAGCCGGAGGAATCTGGAGCGTAGATTCAGAGGGAACCATCGGAGCAATAGAGGAGGAGCTTAGGGCCGTAGGATTCGATGGCTTAATCTCGCTGCTCTCTCTCTCTCATTTCTATTCCTGGTTCATTCAAGTTTTCATCTTTTTCAATTCTCTCGAGAAAATTCCGGTTATTTTCTCGGGAATCTCTCCTAACGGCTTTTCCCTCCGCCGTGAAATTCCGTTTCCGTTTTCTATATACCTCCTCTGTTTCCGGTTAGATTCTCTTCGCCTGAATCGGAACACGCCGATTTTGCCTCCAAAGTACATGGTGACATGCGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.77

Weight (kDa)

4.8

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018678)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006648.1_g000008 Rmu_ssc0000272.1_g000010
rosa_roxburghii	Rroxscaffold_6G00418870
rosa_samantha	Rh1BG151200 Rh4DG055800 Rh5BG513000 Rh5CG536700 Rh5DG525100 Rh6DG312000 Rh7CG250900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	104
AciI	CCGC	2 cut(s)	104, 313
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	267, 321
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	236, 253
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	2 cut(s)	260, 283
AoxI	GGCC	2 cut(s)	39, 171
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	267, 321
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	2 cut(s)	21, 99
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	2 cut(s)	260, 283
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	152, 179
BceAI	ACGGC	3 cut(s)	158, 300, 316
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	21, 99
BfaI	CTAG	1 cut(s)	430
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	21, 99, 226
BmeT110I	CYCGRG	2 cut(s)	260, 283
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	52, 109, 142
BmrFI	CCNGG	3 cut(s)	21, 99, 226
BpmI	CTGGAG	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	167
BpuMI	CCSGG	2 cut(s)	21, 99
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	3 cut(s)	47, 271, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseRI	GAGGAG	3 cut(s)	173, 176, 338
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	41, 173
BsiHKCI	CYCGRG	2 cut(s)	260, 283
BsiSI	CCGG	7 cut(s)	20, 48, 54, 98, 111, 272, 358
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	2 cut(s)	41, 173
BsoBI	CYCGRG	2 cut(s)	260, 283
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	104, 313
BspANI	GGCC	2 cut(s)	41, 173
BspLI	GGNNCC	3 cut(s)	52, 109, 142
BspPI	GGATC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	3 cut(s)	19, 97, 224
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	41, 173
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	412, 420
CviJI	RGCY	6 cut(s)	41, 110, 166, 173, 189, 303
CviKI_1	RGCY	6 cut(s)	41, 110, 166, 173, 189, 303
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	302
Eco88I	CYCGRG	2 cut(s)	260, 283
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	415, 423
FaiI	YATR	4 cut(s)	341, 343, 413, 421
FatI	CATG	2 cut(s)	411, 419
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	430
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	41, 173
HapII	CCGG	7 cut(s)	20, 48, 54, 98, 111, 272, 358
Hin1II	CATG	2 cut(s)	415, 423
HinfI	GANTC	9 cut(s)	16, 44, 71, 117, 131, 180, 288, 365, 379
HpaII	CCGG	7 cut(s)	20, 48, 54, 98, 111, 272, 358
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	76, 136, 149, 384
Hpy188III	TCNNGA	4 cut(s)	121, 260, 262, 285
Hpy99I	CGWCG	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	415, 423
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	5 cut(s)	101, 107, 123, 149, 163
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	94
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	80, 362
MluCI	AATT	3 cut(s)	253, 267, 321
MnlI	CCTC	9 cut(s)	55, 107, 130, 151, 154, 320, 356, 359, 411
MseI	TTAA	1 cut(s)	191
MspI	CCGG	7 cut(s)	20, 48, 54, 98, 111, 272, 358
MspR9I	CCNGG	3 cut(s)	21, 99, 226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	2 cut(s)	21, 99
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	415, 423
NlaIV	GGNNCC	3 cut(s)	52, 109, 142
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	423
PaeR7I	CTCGAG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	9 cut(s)	16, 44, 71, 117, 131, 180, 288, 365, 379
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	52, 109, 142
PspPI	GGNCC	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	21, 99, 226
SetI	ASST	3 cut(s)	66, 168, 348
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	253, 267, 321
SsiI	CCGC	2 cut(s)	104, 313
SspMI	CTAG	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	19, 97, 224
TaqI	TCGA	4 cut(s)	14, 66, 183, 261
TasI	AATT	3 cut(s)	253, 267, 321
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	9 cut(s)	16, 44, 71, 117, 131, 180, 288, 365, 379
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	220, 232
TspGWI	ACGGA	2 cut(s)	315, 321
Tth111I	GACNNNGTC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	267, 321
XceI	RCATGY	1 cut(s)	423
XhoI	CTCGAG	1 cut(s)	260
XspI	CTAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.