Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000272.1

Orthogroup ID

OG0018678

Physical Location & Seq

Genomic Coordinates Forward (+)

54305 .. 55596

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000272.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggtgaccattgtgtgtgtcatttctgctcgtgcaaagttgaaggatgttgcgctgagtgacgtggttttgtcaaattatgtgcgccagggactggctggtgtagcagtttcggtgattggtgaaatgctacaacagggcctaagacccgacaaggttgccatgttatctgcaatttcaggttgtgcacaactgagtgattctctctctggaaagtgccgccatggttatgttctaaggaatggactagaaggccaccctctcccacgccaccacagcctacccttccattctaggcaccacccccgtcgacgtctcctccggcgccaccaccaccaacctgatccccccctcaccccctctctctctctatctcttttccaaaatccgattccagttttggttggcatcgcctccgatagccagagagtgaaaatggagccactggcacaaggacttcgacgtccagtacaagcacctttcaccggatgcttcgggtttcgattctggggagagagagatgtgtggccgattccggttccggcgacgaggtcgaagaatcatattatttgggcgtgggatcgccgggagagggagccggaggaatctggagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

205

Amino Acids

22.92

Weight (kDa)

10.38

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018678)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006648.1_g000008 Rmu_ssc0000272.1_g000010
rosa_roxburghii	Rroxscaffold_6G00418870
rosa_samantha	Rh1BG151200 Rh4DG055800 Rh5BG513000 Rh5CG536700 Rh5DG525100 Rh6DG312000 Rh7CG250900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	462
AatII	GACGTC	2 cut(s)	316, 466
AccB1I	GGYRCC	2 cut(s)	297, 324
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	338, 588
AcoI	YGGCCR	1 cut(s)	527
AcyI	GRCGYC	3 cut(s)	313, 325, 463
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	94, 485, 592
AgsI	TTSAA	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	338, 588
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	3 cut(s)	139, 253, 527
ApaLI	GTGCAC	1 cut(s)	186
AspLEI	GCGC	3 cut(s)	55, 87, 327
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	5 cut(s)	16, 127, 134, 346, 475
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	297, 324
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	248, 294
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	89, 587
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
BmrFI	CCNGG	2 cut(s)	89, 587
BmsI	GCATC	2 cut(s)	417, 479
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpuMI	CCSGG	1 cut(s)	587
BsaHI	GRCGYC	3 cut(s)	313, 325, 463
BsaJI	CCNNGG	2 cut(s)	88, 223
BsaWI	WCCGGW	2 cut(s)	485, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 485, 592
Bse1I	ACTGG	4 cut(s)	99, 395, 450, 467
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	88, 223
BseGI	GGATG	2 cut(s)	52, 494
BseLI	CCNNNNNNNGG	3 cut(s)	94, 485, 592
BseMII	CTCAG	2 cut(s)	47, 185
BseNI	ACTGG	4 cut(s)	99, 395, 450, 467
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	141, 255, 529
BshNI	GGYRCC	2 cut(s)	297, 324
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	94, 485, 592
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	141, 255, 529
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	343, 580
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	3 cut(s)	141, 255, 529
BspCNI	CTCAG	2 cut(s)	48, 186
BspLI	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
BspPI	GGATC	2 cut(s)	338, 588
BspT107I	GGYRCC	2 cut(s)	297, 324
BsrI	ACTGG	4 cut(s)	99, 395, 450, 467
BssECI	CCNNGG	2 cut(s)	88, 223
BssMI	GATC	2 cut(s)	343, 580
BssNI	GRCGYC	3 cut(s)	313, 325, 463
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	89
BstACI	GRCGYC	3 cut(s)	313, 325, 463
BstDEI	CTNAG	4 cut(s)	56, 143, 194, 236
BstDSI	CCRYGG	1 cut(s)	223
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	52, 494
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	3 cut(s)	55, 87, 327
BstKTI	GATC	2 cut(s)	346, 583
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	343, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 276
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	87, 585
BstSLI	GKGCMC	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	141, 255, 529
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	52, 494
BtsIMutI	CAGTG	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	3 cut(s)	55, 87, 327
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	2 cut(s)	163, 224
CviJI	RGCY	8 cut(s)	98, 141, 255, 279, 423, 442, 529, 598
CviKI_1	RGCY	8 cut(s)	98, 141, 255, 279, 423, 442, 529, 598
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	4 cut(s)	56, 143, 194, 236
DinI	GGCGCC	1 cut(s)	326
DpnI	GATC	2 cut(s)	345, 582
DpnII	GATC	2 cut(s)	343, 580
DrdI	GACNNNNNNGTC	1 cut(s)	462
DseDI	GACNNNNNNGTC	1 cut(s)	462
EaeI	YGGCCR	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	326
EheI	GGCGCC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	166, 227
FaiI	YATR	5 cut(s)	81, 164, 225, 231, 564
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	162, 223
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	2 cut(s)	59, 501
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	248, 294
GlaI	GCGC	3 cut(s)	54, 86, 326
GluI	GCNGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	141, 255, 529
HapII	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
HhaI	GCGC	3 cut(s)	55, 87, 327
Hin1I	GRCGYC	3 cut(s)	313, 325, 463
Hin1II	CATG	2 cut(s)	166, 227
Hin6I	GCGC	3 cut(s)	53, 85, 325
HinP1I	GCGC	3 cut(s)	53, 85, 325
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HinfI	GANTC	6 cut(s)	200, 391, 504, 532, 559, 605
HpaII	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
HphI	GGTGA	5 cut(s)	16, 127, 134, 346, 475
Hpy166II	GTNNAC	2 cut(s)	188, 311
Hpy188I	TCNGA	2 cut(s)	390, 418
Hpy188III	TCNNGA	2 cut(s)	210, 609
Hpy8I	GTNNAC	2 cut(s)	188, 311
Hpy99I	CGWCG	4 cut(s)	312, 315, 465, 550
HpyAV	CCTTC	3 cut(s)	37, 245, 295
HpyCH4IV	ACGT	3 cut(s)	63, 313, 463
HpyCH4V	TGCA	3 cut(s)	35, 173, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 276
HpyF3I	CTNAG	4 cut(s)	56, 143, 194, 236
HpySE526I	ACGT	3 cut(s)	63, 313, 463
Hsp92I	GRCGYC	3 cut(s)	313, 325, 463
Hsp92II	CATG	2 cut(s)	166, 227
HspAI	GCGC	3 cut(s)	53, 85, 325
KasI	GGCGCC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	343, 580
LmnI	GCTCC	2 cut(s)	439, 595
LweI	GCATC	2 cut(s)	417, 479
MaeI	CTAG	2 cut(s)	248, 294
MaeII	ACGT	3 cut(s)	63, 313, 463
MaeIII	GTNAC	2 cut(s)	4, 59
MalI	GATC	2 cut(s)	345, 582
MboI	GATC	2 cut(s)	343, 580
MboII	GAAGA	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	76, 174
Mly113I	GGCGCC	1 cut(s)	325
MnlI	CCTC	8 cut(s)	270, 329, 362, 370, 424, 543, 585, 595
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
MspR9I	CCNGG	2 cut(s)	89, 587
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	104, 276
NarI	GGCGCC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	2 cut(s)	343, 580
NlaIII	CATG	2 cut(s)	166, 227
NlaIV	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
NmuCI	GTSAC	2 cut(s)	4, 59
PfeI	GAWTC	6 cut(s)	200, 391, 504, 532, 559, 605
PflFI	GACNNNGTC	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	221
PluTI	GGCGCC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	343, 580
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	89, 587
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	8 cut(s)	66, 159, 184, 316, 343, 466, 481, 554
SfaNI	GCATC	2 cut(s)	417, 479
SfoI	GGCGCC	1 cut(s)	326
SgrDI	CGTCGACG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	76, 174
SsiI	CCGC	1 cut(s)	220
SspDI	GGCGCC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	248, 294
StyD4I	CCNGG	2 cut(s)	87, 585
StyI	CCWWGG	1 cut(s)	223
TaiI	ACGT	3 cut(s)	66, 316, 466
TaqI	TCGA	4 cut(s)	310, 460, 502, 554
TasI	AATT	2 cut(s)	76, 174
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	6 cut(s)	200, 391, 504, 532, 559, 605
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	4, 59
Tsp45I	GTSAC	2 cut(s)	4, 59
TspRI	CASTG	1 cut(s)	450
Tth111I	GACNNNGTC	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	2 cut(s)	248, 294
ZraI	GACGTC	2 cut(s)	314, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.