Rroxscaffold_6G00418870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018678
Physical Location & Seq
Forward (+)
40414858 .. 40426649
11792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418870.1

Sequence Viewer

Length: 672 bp
ATGGTGGGGATTTGCTCCAAGGGCATGGATCTCTTGGGATGGAGTGGTTTGAATCAAGGTTTTCGCAGGCTTGTTCTTGAGATTCGGTGGTCATCTTGCTACTTCGGTAACCGTGTTGCCGGGACCGGAGGAACTTGTTTTGACGAGCGCCGACTTGTGGTTTCGATGGAGGCGAGGCCGTGTGTTGTTGGGTCGAGCAATCTGTGTGGAGGCGTCATGGCGGCATACGGGATGGATCGTGACGACTGCGATGTTGGTCGTGGCGGCATGCGATGTTGTCGTGACGGCGTCAAGGCGGTGGTGCATCGGGGCTTCGGTACGGCGGTGGTTGTCGGGTCAAGTCAAGGCCGCCTTGAGGCCTTGGTTGGTCACTCCTCTCTGGGCTGCGTTTTTGGGCTTCTATGGCTCATTGAGGTTGAGATTCATTCACTATTATGGTCAAAATGGGTCGTATCCATGCATGCACTTGTCACCTTCACGATCGAAGAAAACCTATTAAGTTTGAGAGAGTCATGCCTGTCCGATGGCGCCCCTCGCGGCGTTGTCGTCGAACGGGCTCAAGGAGACCGAGTGTCCGAAGGAGAGTGGCCTAATCGGAGTAAGTGCTGCGGGGGATTGCCGGTGTTGTCCGGATCGGTTGGAGGATCGACGGGGATGGACAAAGGCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

23.7

Weight (kDa)

7.49

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 527
AccII CGCG 1 cut(s) 537
AccIII TCCGGA 1 cut(s) 629
AciI CCGC 8 cut(s) 221, 264, 296, 323, 349, 537, 609, 666
AclWI GGATC 4 cut(s) 36, 243, 640, 652
AcyI GRCGYC 3 cut(s) 213, 288, 528
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 2 cut(s) 157, 355
AgsI TTSAA 1 cut(s) 52
AhdI GACNNNNNGTC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 4 cut(s) 36, 243, 640, 652
Aor13HI TCCGGA 1 cut(s) 629
AoxI GGCC 4 cut(s) 176, 346, 357, 587
ApeKI GCWGC 2 cut(s) 384, 606
AspLEI GCGC 2 cut(s) 150, 530
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 463
AvaII GGWCC 1 cut(s) 123
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 559
BbvI GCAGC 2 cut(s) 371, 593
BccI CCATC 5 cut(s) 33, 160, 226, 518, 649
BceAI ACGGC 3 cut(s) 163, 301, 336
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 558
BfoI RGCGCY 2 cut(s) 151, 531
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 6 cut(s) 222, 265, 349, 385, 538, 607
BlsI GCNGC 6 cut(s) 223, 266, 350, 386, 539, 608
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 123
BmeRI GACNNNNNGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 124, 529
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 313
BpuEI CTTGAG 3 cut(s) 98, 374, 543
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 3 cut(s) 213, 288, 528
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 18, 360
BsaWI WCCGGW 2 cut(s) 125, 629
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 355
Bse118I RCCGGY 1 cut(s) 619
BseAI TCCGGA 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 18, 360
BseGI GGATG 3 cut(s) 44, 237, 660
BseLI CCNNNNNNNGG 2 cut(s) 157, 355
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 371, 593
Bsh1236I CGCG 1 cut(s) 537
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 4 cut(s) 178, 348, 359, 589
BshNI GGYRCC 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 483
BsiSI CCGG 4 cut(s) 120, 126, 620, 630
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 157, 355
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 4 cut(s) 178, 348, 359, 589
Bso31I GGTCTC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 559
Bsp13I TCCGGA 1 cut(s) 629
Bsp143I GATC 5 cut(s) 28, 235, 480, 632, 644
BspACI CCGC 8 cut(s) 221, 264, 296, 323, 349, 537, 609, 666
BspANI GGCC 4 cut(s) 178, 348, 359, 589
BspEI TCCGGA 1 cut(s) 629
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 2 cut(s) 124, 529
BspPI GGATC 4 cut(s) 36, 243, 640, 652
BspT107I GGYRCC 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 2 cut(s) 18, 360
BssMI GATC 5 cut(s) 28, 235, 480, 632, 644
BssNI GRCGYC 3 cut(s) 213, 288, 528
BssT1I CCWWGG 2 cut(s) 18, 360
Bst4CI ACNGT 1 cut(s) 113
BstACI GRCGYC 3 cut(s) 213, 288, 528
BstC8I GCNNGC 3 cut(s) 68, 269, 462
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 3 cut(s) 44, 237, 660
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 2 cut(s) 151, 531
BstHHI GCGC 2 cut(s) 150, 530
BstKTI GATC 5 cut(s) 31, 238, 483, 635, 647
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 5 cut(s) 28, 235, 480, 632, 644
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 3 cut(s) 21, 403, 534
BstNSI RCATGY 2 cut(s) 271, 464
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 371, 593
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 1 cut(s) 28
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 4 cut(s) 178, 348, 359, 589
BtgZI GCGATG 2 cut(s) 264, 286
BtsCI GGATG 3 cut(s) 44, 237, 660
Cac8I GCNNGC 3 cut(s) 68, 269, 462
CfoI GCGC 2 cut(s) 150, 530
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 2 cut(s) 202, 277
Csp6I GTAC 1 cut(s) 318
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 6 cut(s) 25, 217, 268, 457, 461, 513
CviQI GTAC 1 cut(s) 318
DinI GGCGCC 1 cut(s) 529
DpnI GATC 5 cut(s) 30, 237, 482, 634, 646
DpnII GATC 5 cut(s) 28, 235, 480, 632, 644
DriI GACNNNNNGTC 1 cut(s) 571
Eam1105I GACNNNNNGTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 18, 360
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 18, 360
EcoT22I ATGCAT 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 559
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 18, 360
FaeI CATG 6 cut(s) 28, 220, 271, 460, 464, 516
FaiI YATR 9 cut(s) 26, 218, 226, 269, 403, 436, 458, 462, 514
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 136
FatI CATG 6 cut(s) 24, 216, 267, 456, 460, 512
FauI CCCGC 1 cut(s) 602
Fnu4HI GCNGC 6 cut(s) 222, 265, 349, 385, 538, 607
FokI GGATG 3 cut(s) 51, 244, 667
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 6 cut(s) 222, 265, 349, 385, 538, 607
GlaI GCGC 2 cut(s) 149, 529
GluI GCNGC 6 cut(s) 222, 265, 349, 385, 538, 607
HaeII RGCGCY 2 cut(s) 151, 531
HaeIII GGCC 4 cut(s) 178, 348, 359, 589
HapII CCGG 4 cut(s) 120, 126, 620, 630
HgaI GACGC 2 cut(s) 202, 277
HhaI GCGC 2 cut(s) 150, 530
Hin1I GRCGYC 3 cut(s) 213, 288, 528
Hin1II CATG 6 cut(s) 28, 220, 271, 460, 464, 516
Hin6I GCGC 2 cut(s) 148, 528
HinP1I GCGC 2 cut(s) 148, 528
HinfI GANTC 4 cut(s) 52, 82, 421, 509
HpaII CCGG 4 cut(s) 120, 126, 620, 630
HphI GGTGA 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 523, 577, 597
Hpy188III TCNNGA 5 cut(s) 77, 239, 281, 478, 630
Hpy99I CGWCG 2 cut(s) 551, 652
HpyAV CCTTC 2 cut(s) 484, 572
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 304, 460, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 403, 534
Hsp92I GRCGYC 3 cut(s) 213, 288, 528
Hsp92II CATG 6 cut(s) 28, 220, 271, 460, 464, 516
HspAI GCGC 2 cut(s) 148, 528
KasI GGCGCC 1 cut(s) 527
Kpn2I TCCGGA 1 cut(s) 629
Kzo9I GATC 5 cut(s) 28, 235, 480, 632, 644
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 52, 133, 139, 365, 530, 633, 643
Lsp1109I GCAGC 2 cut(s) 371, 593
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 5 cut(s) 107, 239, 281, 368, 469
MalI GATC 5 cut(s) 30, 237, 482, 634, 646
MboI GATC 5 cut(s) 28, 235, 480, 632, 644
MboII GAAGA 1 cut(s) 497
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 559
Mly113I GGCGCC 1 cut(s) 528
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 9 cut(s) 122, 163, 168, 203, 349, 385, 406, 543, 635
Mph1103I ATGCAT 1 cut(s) 462
MroI TCCGGA 1 cut(s) 629
MseI TTAA 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 433
MspI CCGG 4 cut(s) 120, 126, 620, 630
MspR9I CCNGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 3 cut(s) 21, 403, 534
NarI GGCGCC 1 cut(s) 528
NciI CCSGG 1 cut(s) 121
NdeII GATC 5 cut(s) 28, 235, 480, 632, 644
NlaIII CATG 6 cut(s) 28, 220, 271, 460, 464, 516
NlaIV GGNNCC 2 cut(s) 124, 529
NmuCI GTSAC 4 cut(s) 239, 281, 368, 469
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 2 cut(s) 271, 464
PaeI GCATGC 2 cut(s) 271, 464
PceI AGGCCT 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PfeI GAWTC 3 cut(s) 52, 82, 421
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 6 cut(s) 223, 266, 350, 386, 539, 608
Ple19I CGATCG 1 cut(s) 483
PleI GAGTC 1 cut(s) 517
PluTI GGCGCC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 124, 529
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 287
PvuI CGATCG 1 cut(s) 483
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 433
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 6 cut(s) 222, 265, 349, 385, 538, 607
Sau3AI GATC 5 cut(s) 28, 235, 480, 632, 644
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 559
SetI ASST 4 cut(s) 61, 417, 476, 495
SfaNI GCATC 1 cut(s) 313
SfoI GGCGCC 1 cut(s) 529
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 433
SmlI CTYRAG 3 cut(s) 77, 353, 558
SmoI CTYRAG 3 cut(s) 77, 353, 558
SphI GCATGC 2 cut(s) 271, 464
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 8 cut(s) 221, 264, 296, 323, 349, 537, 609, 666
SspDI GGCGCC 1 cut(s) 527
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 2 cut(s) 18, 360
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 5 cut(s) 164, 194, 483, 549, 647
TaqII GACCGA 1 cut(s) 582
TauI GCSGC 4 cut(s) 224, 267, 351, 540
TfiI GAWTC 3 cut(s) 52, 82, 421
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TseFI GTSAC 4 cut(s) 239, 281, 368, 469
TseI GCWGC 2 cut(s) 384, 606
Tsp45I GTSAC 4 cut(s) 239, 281, 368, 469
TspDTI ATGAA 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 123
XceI RCATGY 2 cut(s) 271, 464
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.