Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0019407

Physical Location & Seq

Genomic Coordinates Forward (+)

50987 .. 55057

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgcattgcttcagaagggaattggcaccttctcgaattagttctcgggctgctaaccgtggcattctccttgctgattcccagtctgatgaggtttgcagcatcagtgcttcgatgagcaatgatgctcaatcttcttcaatcactcgtgccgcgtcttcctccacgccgcccgcggcgtctgtttcagctctcaaaagattgaagcagagattgaatgagttgtggctgtctgcagttcggaaatggcctacggtgtcttcggactcatcctttggtgttctgtgtcccggaaatgaggttccagagtgtgacacgcagctcgggacagctttatttgacatgtttgctagatgtggcgatcctcaaagtgcaatgaaggctttcgataacatggcaagaagagatgtttgtgcttgggcagcagccattggagcaatggtcatgcaaggaaatggggagcgagcgctagagctttttgatgacatgcttaagcaagaggtgaaaccagatgaagtatctttgtggcaaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

5.46

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	135 - 174	4.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019407)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387071
rosa_multiflora	Rmu_sc0006648.1_g000010
rosa_samantha	Rh4CG014400 Rh4CG014700 Rh4CG015200 Rh4CG015700 Rh4CG016100 Rh4DG011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	2 cut(s)	155, 176
AciI	CCGC	4 cut(s)	153, 170, 174, 176
AclWI	GGATC	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	179
AfeI	AGCGCT	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	141, 205, 217
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	4 cut(s)	191, 322, 332, 475
AluI	AGCT	4 cut(s)	191, 322, 332, 475
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	45, 323
Aor51HI	AGCGCT	1 cut(s)	468
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	5 cut(s)	50, 99, 319, 422, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
Asp700I	GAANNNNTTC	2 cut(s)	40, 383
AspLEI	GCGC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	514
AvaI	CYCGRG	2 cut(s)	45, 323
BanI	GGYRCC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	150, 252
BbvI	GCAGC	5 cut(s)	37, 111, 331, 434, 437
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	351, 470
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	491
BisI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
BlsI	GCNGC	8 cut(s)	52, 101, 154, 171, 178, 321, 424, 427
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	2 cut(s)	45, 323
BmiI	GGNNCC	2 cut(s)	27, 303
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	111, 115
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	2 cut(s)	150, 252
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	58, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	4 cut(s)	4, 127, 381, 444
BseDI	CCNNGG	2 cut(s)	58, 174
BseGI	GGATG	1 cut(s)	269
BseMI	GCAATG	4 cut(s)	4, 127, 381, 444
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	37, 111, 331, 434, 437
Bsh1236I	CGCG	2 cut(s)	155, 176
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	45, 323
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	273, 340
BsmFI	GGGAC	2 cut(s)	273, 340
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	2 cut(s)	45, 323
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	4 cut(s)	153, 170, 174, 176
BspANI	GGCC	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	155, 176
BspLI	GGNNCC	2 cut(s)	27, 303
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	491
BsrDI	GCAATG	4 cut(s)	4, 127, 381, 444
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	58, 174
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	179
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	59, 256
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	174, 465
BstDSI	CCRYGG	2 cut(s)	58, 174
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	155, 176
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 422, 434
BstNSI	RCATGY	2 cut(s)	346, 490
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	2 cut(s)	155, 176
BstV1I	GCAGC	5 cut(s)	37, 111, 331, 434, 437
BstV2I	GAAGAC	2 cut(s)	150, 252
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	2 cut(s)	58, 174
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	174, 465
CfoI	GCGC	1 cut(s)	469
Cfr42I	CCGCGG	1 cut(s)	177
CseI	GACGC	2 cut(s)	144, 168
CviAII	CATG	4 cut(s)	343, 394, 445, 487
CviJI	RGCY	9 cut(s)	50, 191, 229, 250, 322, 332, 383, 428, 475
CviKI_1	RGCY	9 cut(s)	50, 191, 229, 250, 322, 332, 383, 428, 475
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	468
Eco88I	CYCGRG	2 cut(s)	45, 323
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	346, 397, 448, 490
FaiI	YATR	4 cut(s)	344, 395, 446, 488
FaqI	GGGAC	2 cut(s)	273, 340
FatI	CATG	4 cut(s)	342, 393, 444, 486
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
FspBI	CTAG	2 cut(s)	351, 470
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	144, 168
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	346, 397, 448, 490
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HinfI	GANTC	2 cut(s)	77, 266
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	14, 88, 243, 265
Hpy188III	TCNNGA	3 cut(s)	33, 305, 325
HpyAV	CCTTC	3 cut(s)	9, 39, 373
HpyCH4III	ACNGT	2 cut(s)	59, 256
HpyCH4V	TGCA	5 cut(s)	4, 99, 236, 374, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 422, 434
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	346, 397, 448, 490
HspAI	GCGC	1 cut(s)	467
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	434, 460
LpnPI	CCDG	4 cut(s)	95, 304, 318, 522
Lsp1109I	GCAGC	5 cut(s)	37, 111, 331, 434, 437
LweI	GCATC	2 cut(s)	111, 115
MaeI	CTAG	2 cut(s)	351, 470
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	5 cut(s)	126, 129, 150, 252, 414
MluCI	AATT	2 cut(s)	20, 36
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	85, 172, 292, 375, 493
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	40, 383
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	176
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	63
MvnI	CGCG	2 cut(s)	155, 176
MwoI	GCNNNNNNNGC	3 cut(s)	380, 422, 434
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	4 cut(s)	346, 397, 448, 490
NlaIV	GGNNCC	2 cut(s)	27, 303
NmuCI	GTSAC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	346, 490
PciI	ACATGT	1 cut(s)	342
PctI	GAATGC	1 cut(s)	63
PdmI	GAANNNNTTC	2 cut(s)	40, 383
PfeI	GAWTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	8 cut(s)	52, 101, 154, 171, 178, 321, 424, 427
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	27, 303
PstI	CTGCAG	1 cut(s)	238
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	8 cut(s)	51, 100, 153, 170, 177, 320, 423, 426
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	9 cut(s)	31, 96, 193, 303, 324, 334, 477, 504, 536
SfaNI	GCATC	2 cut(s)	111, 115
SfcI	CTRYAG	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	177
SgrBI	CCGCGG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	20, 36
SsiI	CCGC	4 cut(s)	153, 170, 174, 176
SspMI	CTAG	2 cut(s)	351, 470
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	59, 256
TaqI	TCGA	3 cut(s)	34, 113, 387
TasI	AATT	2 cut(s)	20, 36
TauI	GCSGC	3 cut(s)	155, 172, 179
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	5 cut(s)	50, 99, 319, 422, 425
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	392, 528
TspRI	CASTG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	491
XceI	RCATGY	2 cut(s)	346, 490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	2 cut(s)	40, 383
XspI	CTAG	2 cut(s)	351, 470
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.