Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006698.1

Orthogroup ID

OG0018686

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3303

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006698.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgaaacgaggctactcagaatcgtcctccacctctgttgggcctcctcaatcgaggttcaaagccaacccagaagaggattcaaatttcttggaggatgaaagcacaaagatatttgcacgtaaagtggctgatcattatagtgcaaggacaaatcaaactctggaagaacgagaagcaagtccgatcatccatttaaaaaagcttaacaactggatagaagattgtcgtacccgttacaatggtgatgctgatcatcatcaacgccgtaaaaagtttacatttcctgcacgccttatctgtggagactgctatgaggttcgactggataaagccctagcagatgatgcaccctttgatatttgtagttgccagtttgccttgcattattcctggtccactgaagcacgagcacggagagccttggctaatgtttcagccttacttcgcccaggcggaactttcattggaacaatgccagacgctaatgtgattatcaaaaagctgagagaagctgaaggctttttctttggaaatagtgtgtactggatacgatttgatgaagaattttctgaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

193

Amino Acids

22.18

Weight (kDa)

6.96

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006698.1_g000001
rosa_samantha	Rh1AG125700 Rh1BG095800 Rh1CG119300 Rh2AG403100 Rh2CG389200 Rh2DG423300 Rh5AG251400 Rh5BG253000 Rh5CG285600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	85, 566
AcuI	CTGAAG	2 cut(s)	423, 537
AfaI	GTAC	2 cut(s)	232, 545
AfiI	CCNNNNNNNGG	2 cut(s)	39, 76
AgsI	TTSAA	2 cut(s)	61, 84
AjnI	CCWGG	2 cut(s)	392, 451
AluBI	AGCT	3 cut(s)	205, 505, 515
AluI	AGCT	3 cut(s)	205, 505, 515
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	85, 566
AspS9I	GGNCC	2 cut(s)	41, 396
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	394, 453
BciVI	GTATCC	1 cut(s)	543
BclI	TGATCA	2 cut(s)	133, 253
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	394, 453
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	41, 396
BmrFI	CCNGG	2 cut(s)	394, 453
BmsI	GCATC	2 cut(s)	238, 337
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	2 cut(s)	252, 258
BsaJI	CCNNGG	2 cut(s)	423, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 76
Bse1I	ACTGG	4 cut(s)	218, 330, 373, 551
Bse8I	GATNNNNATC	2 cut(s)	252, 258
BseBI	CCWGG	2 cut(s)	394, 453
BseDI	CCNNGG	2 cut(s)	423, 451
BseGI	GGATG	2 cut(s)	103, 189
BseJI	GATNNNNATC	2 cut(s)	252, 258
BseLI	CCNNNNNNNGG	2 cut(s)	39, 76
BseMII	CTCAG	2 cut(s)	30, 497
BseNI	ACTGG	4 cut(s)	218, 330, 373, 551
BseRI	GAGGAG	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	39, 76
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	133, 186, 253
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	29, 498
BsrI	ACTGG	4 cut(s)	218, 330, 373, 551
BssECI	CCNNGG	2 cut(s)	423, 451
BssMI	GATC	3 cut(s)	133, 186, 253
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	394, 453
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	16, 506
BstF5I	GGATG	2 cut(s)	103, 189
BstKTI	GATC	3 cut(s)	136, 189, 256
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	133, 186, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 419
BstNI	CCWGG	2 cut(s)	394, 453
BstSCI	CCNGG	2 cut(s)	392, 451
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	103, 189
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	41, 396
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	231, 544
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviQI	GTAC	2 cut(s)	231, 544
DdeI	CTNAG	2 cut(s)	16, 506
DpnI	GATC	3 cut(s)	135, 188, 255
DpnII	GATC	3 cut(s)	133, 186, 253
DraI	TTTAAA	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	423, 537
EcoRII	CCWGG	2 cut(s)	392, 451
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaiI	YATR	2 cut(s)	141, 315
FbaI	TGATCA	2 cut(s)	133, 253
FokI	GGATG	2 cut(s)	110, 176
FspBI	CTAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	43
HgaI	GACGC	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	20, 80
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	279, 399, 544
Hpy188I	TCNGA	3 cut(s)	19, 186, 574
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	3 cut(s)	279, 399, 544
HpyAV	CCTTC	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	5 cut(s)	119, 146, 290, 350, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 419
HpyF3I	CTNAG	2 cut(s)	16, 506
HpySE526I	ACGT	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	133, 253
Kzo9I	GATC	3 cut(s)	133, 186, 253
LweI	GCATC	2 cut(s)	238, 337
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	135, 188, 255
MboI	GATC	3 cut(s)	133, 186, 253
MboII	GAAGA	4 cut(s)	86, 179, 233, 575
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	2 cut(s)	85, 566
MnlI	CCTC	8 cut(s)	37, 43, 48, 54, 57, 70, 88, 310
MseI	TTAA	2 cut(s)	197, 207
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	394, 453
MvaI	CCWGG	2 cut(s)	394, 453
MwoI	GCNNNNNNNGC	2 cut(s)	347, 419
NdeII	GATC	3 cut(s)	133, 186, 253
PfeI	GAWTC	2 cut(s)	20, 80
Ppu21I	YACGTR	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	392, 451
PspGI	CCWGG	2 cut(s)	392, 451
PspPI	GGNCC	2 cut(s)	41, 396
RsaI	GTAC	2 cut(s)	232, 545
RsaNI	GTAC	2 cut(s)	231, 544
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	197, 207
Sau3AI	GATC	3 cut(s)	133, 186, 253
Sau96I	GGNCC	2 cut(s)	41, 396
ScrFI	CCNGG	2 cut(s)	394, 453
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	7 cut(s)	35, 59, 124, 207, 321, 507, 517
SfaNI	GCATC	2 cut(s)	238, 337
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	85, 566
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	392, 451
StyI	CCWWGG	1 cut(s)	423
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	53, 322
TasI	AATT	2 cut(s)	85, 566
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	2 cut(s)	197, 207
Tru9I	TTAA	2 cut(s)	197, 207
TscAI	CASTG	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	17, 114, 454, 576
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	85, 566
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.