Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018686

Physical Location & Seq

Genomic Coordinates Forward (+)

53009458 .. 53013714

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG389200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCAACCTCTGTTAGGCCTCCTCAATCGAGATTCAAAGCCAACCCAGAAGTGTCATACATTGTGCTCTCAGAGGATTCAAATTTCTTGGAGGATGAGAGCACAAAGATTAAGAGTGTCTTAATTCAGCTCTATGCTCACCGAGGAGATGCTGTTCTTGATCTTGCATGCAGCAAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGATTTGCTTCAGTCCAAGATATGTATTCGACTACACTGAGCTCATGTCCAGTGGTTGCTCTCCAGTATTGGATGAGGCTGTACCCATCTCCATAGATCAAAGAAAAAGAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

4.94

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006698.1_g000001
rosa_samantha	Rh1AG125700 Rh1BG095800 Rh1CG119300 Rh2AG403100 Rh2CG389200 Rh2DG423300 Rh5AG251400 Rh5BG253000 Rh5CG285600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	61, 105
AloI	GAACNNNNNNTCC	2 cut(s)	162, 194
AluBI	AGCT	2 cut(s)	154, 298
AluI	AGCT	2 cut(s)	154, 298
Alw21I	GWGCWC	3 cut(s)	93, 128, 300
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	3 cut(s)	93, 128, 300
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	163, 220
BpmI	CTGGAG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	213, 306, 320
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	124, 334
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	30, 108, 285
BseNI	ACTGG	3 cut(s)	213, 306, 320
BseRI	GAGGAG	2 cut(s)	36, 183
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	3 cut(s)	93, 128, 300
BslI	CCNNNNNNNGG	1 cut(s)	39
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	93, 128, 300
Bsp143I	GATC	2 cut(s)	184, 352
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	3 cut(s)	29, 107, 286
BsrI	ACTGG	3 cut(s)	213, 306, 320
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	184, 352
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	16, 94, 294
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	124, 334
BstKTI	GATC	2 cut(s)	187, 355
BstMBI	GATC	2 cut(s)	184, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 261
BstNSI	RCATGY	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	124, 334
BtsIMutI	CAGTG	2 cut(s)	291, 313
Cac8I	GCNNGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	192, 301
CviJI	RGCY	7 cut(s)	12, 43, 65, 154, 218, 298, 335
CviKI_1	RGCY	7 cut(s)	12, 43, 65, 154, 218, 298, 335
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	16, 94, 294
DpnI	GATC	2 cut(s)	186, 354
DpnII	GATC	2 cut(s)	184, 352
Ecl136II	GAGCTC	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	2 cut(s)	195, 304
FaiI	YATR	6 cut(s)	82, 159, 193, 279, 302, 350
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	2 cut(s)	191, 300
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	2 cut(s)	131, 341
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	195, 304
HinfI	GANTC	3 cut(s)	20, 57, 101
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	19, 97
Hpy188III	TCNNGA	2 cut(s)	54, 182
HpyCH4V	TGCA	4 cut(s)	191, 195, 233, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 261
HpyF3I	CTNAG	3 cut(s)	16, 94, 294
Hsp92II	CATG	2 cut(s)	195, 304
Kzo9I	GATC	2 cut(s)	184, 352
LpnPI	CCDG	5 cut(s)	84, 194, 269, 319, 333
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	2 cut(s)	163, 220
MaeI	CTAG	1 cut(s)	221
MalI	GATC	2 cut(s)	186, 354
MboI	GATC	2 cut(s)	184, 352
MhlI	GDGCHC	3 cut(s)	93, 128, 300
MluCI	AATT	2 cut(s)	106, 147
MnlI	CCTC	8 cut(s)	37, 43, 54, 57, 91, 109, 161, 325
MseI	TTAA	2 cut(s)	135, 146
MwoI	GCNNNNNNNGC	2 cut(s)	230, 261
NdeII	GATC	2 cut(s)	184, 352
NlaIII	CATG	2 cut(s)	195, 304
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	20, 57, 101
PkrI	GCNGC	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	135, 146
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	184, 352
SduI	GDGCHC	3 cut(s)	93, 128, 300
SetI	ASST	4 cut(s)	35, 156, 204, 300
SfaNI	GCATC	2 cut(s)	163, 220
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	2 cut(s)	106, 147
SseBI	AGGCCT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	43
TaqI	TCGA	3 cut(s)	53, 205, 285
TasI	AATT	2 cut(s)	106, 147
TfiI	GAWTC	3 cut(s)	20, 57, 101
Tru1I	TTAA	2 cut(s)	135, 146
Tru9I	TTAA	2 cut(s)	135, 146
TscAI	CASTG	2 cut(s)	298, 313
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	298, 313
XagI	CCTNNNNNAGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.