Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018686

Physical Location & Seq

Genomic Coordinates Forward (+)

25861265 .. 25864988

Gene Structure 3724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG119300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCAATCTCTGTTGGGCCTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAAGATGAGAGCACAAAGATTTTTGCGCGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAACTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGCAAGATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGAAATTTAAGTCTTCAAGCCCCTTTGGTATCAAGTACAAGTTTCATCTTGAGGTACACTATCACAAGATGAATGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

174

Amino Acids

20.03

Weight (kDa)

8.98

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 95	3e-19	mRNA (guanine-N(7))-methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	96 - 148	6.3e-11	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006698.1_g000001
rosa_samantha	Rh1AG125700 Rh1BG095800 Rh1CG119300 Rh2AG403100 Rh2CG389200 Rh2DG423300 Rh5AG251400 Rh5BG253000 Rh5CG285600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AciI	CCGC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	85, 446
AfaI	GTAC	3 cut(s)	301, 479, 498
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	61, 84, 459
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	2 cut(s)	179, 238
AluI	AGCT	2 cut(s)	179, 238
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	41, 129
ApoI	RAATTY	2 cut(s)	85, 446
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	180, 407
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	41
BmsI	GCATC	3 cut(s)	247, 307, 406
BpiI	GAAGAC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	2 cut(s)	321, 327
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	218, 399
Bse8I	GATNNNNATC	2 cut(s)	321, 327
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	189
BseJI	GATNNNNATC	2 cut(s)	321, 327
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	218, 399
BseRI	GAGGAG	2 cut(s)	36, 267
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	43, 131
BsiHKAI	GWGCWC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	43, 131
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	133, 186, 268, 322
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	43, 131
BspCNI	CTCAG	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	218, 399
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	133, 186, 268, 322
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	247, 277, 361
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	4 cut(s)	136, 189, 271, 325
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	133, 186, 268, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	279
BstUI	CGCG	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	43, 131
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	247, 277, 361
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	300, 478, 497
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	8 cut(s)	12, 43, 65, 131, 179, 238, 404, 462
CviKI_1	RGCY	8 cut(s)	12, 43, 65, 131, 179, 238, 404, 462
CviQI	GTAC	3 cut(s)	300, 478, 497
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	4 cut(s)	135, 188, 270, 324
DpnII	GATC	4 cut(s)	133, 186, 268, 322
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
FaeI	CATG	1 cut(s)	279
FaiI	YATR	4 cut(s)	141, 243, 277, 384
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	180, 407
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	43, 131
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	20, 80
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	348, 499
Hpy188I	TCNGA	2 cut(s)	19, 186
Hpy188III	TCNNGA	3 cut(s)	164, 266, 491
Hpy8I	GTNNAC	2 cut(s)	348, 499
HpyCH4V	TGCA	5 cut(s)	146, 275, 359, 419, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	133, 186, 268, 322
LpnPI	CCDG	6 cut(s)	84, 149, 199, 369, 380, 455
LweI	GCATC	3 cut(s)	247, 307, 406
MaeI	CTAG	2 cut(s)	180, 407
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	135, 188, 270, 324
MboI	GATC	4 cut(s)	133, 186, 268, 322
MboII	GAAGA	5 cut(s)	86, 107, 179, 302, 447
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	85, 231, 446
MnlI	CCTC	8 cut(s)	37, 48, 54, 57, 70, 245, 379, 487
MseI	TTAA	5 cut(s)	197, 207, 219, 230, 450
MslI	CAYNNNNRTG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	4 cut(s)	133, 186, 268, 322
NlaIII	CATG	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	275
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	20, 80
PkrI	GCNGC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	3 cut(s)	301, 479, 498
RsaNI	GTAC	3 cut(s)	300, 478, 497
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	5 cut(s)	197, 207, 219, 230, 450
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	4 cut(s)	133, 186, 268, 322
Sau96I	GGNCC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	5 cut(s)	59, 181, 240, 390, 498
SfaNI	GCATC	3 cut(s)	247, 307, 406
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	85, 231, 446
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	2 cut(s)	180, 407
TaqI	TCGA	2 cut(s)	53, 391
TasI	AATT	3 cut(s)	85, 231, 446
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	5 cut(s)	197, 207, 219, 230, 450
Tru9I	TTAA	5 cut(s)	197, 207, 219, 230, 450
TspDTI	ATGAA	2 cut(s)	17, 476
XapI	RAATTY	2 cut(s)	85, 446
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	2 cut(s)	180, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.