Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018686

Physical Location & Seq

Genomic Coordinates Reverse (-)

31466845 .. 31469320

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG253000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCCACCTCTGTTGGGCCTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAGGATGAAAGCACAAAGATATTTGCACGTAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAGCTCAACAACTGGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGTAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCTGCCTTACTTCGCCCAGGCGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGGTTATTTTACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

165

Amino Acids

18.45

Weight (kDa)

9.01

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 95	2.3e-19	mRNA (guanine-N(7))-methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	96 - 160	1.1e-24	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006698.1_g000001
rosa_samantha	Rh1AG125700 Rh1BG095800 Rh1CG119300 Rh2AG403100 Rh2CG389200 Rh2DG423300 Rh5AG251400 Rh5BG253000 Rh5CG285600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	279, 423
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	39, 76
AgsI	TTSAA	2 cut(s)	61, 84
AjnI	CCWGG	2 cut(s)	359, 418
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	179, 205, 238, 472
AluI	AGCT	4 cut(s)	179, 205, 238, 472
Alw21I	GWGCWC	1 cut(s)	382
AoxI	GGCC	2 cut(s)	41, 129
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	41, 363
AvaII	GGWCC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	361, 420
BfaI	CTAG	2 cut(s)	180, 305
Bme1390I	CCNGG	2 cut(s)	361, 420
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	41, 363
BmrFI	CCNGG	2 cut(s)	361, 420
BmsI	GCATC	2 cut(s)	247, 304
BsaAI	YACGTR	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	250, 390, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 76
Bse1I	ACTGG	3 cut(s)	218, 297, 340
BseBI	CCWGG	2 cut(s)	361, 420
BseDI	CCNNGG	3 cut(s)	250, 390, 418
BseGI	GGATG	2 cut(s)	103, 189
BseLI	CCNNNNNNNGG	2 cut(s)	39, 76
BseMII	CTCAG	2 cut(s)	30, 464
BseNI	ACTGG	3 cut(s)	218, 297, 340
BseRI	GAGGAG	2 cut(s)	36, 267
BshFI	GGCC	2 cut(s)	43, 131
BsiHKAI	GWGCWC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	39, 76
BsnI	GGCC	2 cut(s)	43, 131
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	133, 186, 268
BspACI	CCGC	2 cut(s)	279, 423
BspANI	GGCC	2 cut(s)	43, 131
BspCNI	CTCAG	2 cut(s)	29, 465
BsrI	ACTGG	3 cut(s)	218, 297, 340
BssECI	CCNNGG	3 cut(s)	250, 390, 418
BssMI	GATC	3 cut(s)	133, 186, 268
BssSI	CACGAG	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	361, 420
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	247, 277
BstDEI	CTNAG	3 cut(s)	16, 473, 495
BstF5I	GGATG	2 cut(s)	103, 189
BstKTI	GATC	3 cut(s)	136, 189, 271
BstMBI	GATC	3 cut(s)	133, 186, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 386
BstNI	CCWGG	2 cut(s)	361, 420
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	359, 418
BsuRI	GGCC	2 cut(s)	43, 131
BtsCI	GGATG	2 cut(s)	103, 189
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	247, 277
Cfr13I	GGNCC	2 cut(s)	41, 363
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	227
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	1 cut(s)	276
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	16, 473, 495
DpnI	GATC	3 cut(s)	135, 188, 270
DpnII	GATC	3 cut(s)	133, 186, 268
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	359, 418
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	1 cut(s)	279
FaiI	YATR	3 cut(s)	141, 243, 277
FatI	CATG	1 cut(s)	275
FokI	GGATG	2 cut(s)	110, 176
FspBI	CTAG	2 cut(s)	180, 305
HaeIII	GGCC	2 cut(s)	43, 131
HgaI	GACGC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	2 cut(s)	20, 80
Hpy166II	GTNNAC	2 cut(s)	227, 366
Hpy188I	TCNGA	2 cut(s)	19, 186
Hpy188III	TCNNGA	2 cut(s)	164, 266
Hpy8I	GTNNAC	2 cut(s)	227, 366
HpyAV	CCTTC	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	5 cut(s)	119, 146, 275, 317, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 386
HpyF3I	CTNAG	3 cut(s)	16, 473, 495
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	133, 186, 268
LweI	GCATC	2 cut(s)	247, 304
MaeI	CTAG	2 cut(s)	180, 305
MaeII	ACGT	1 cut(s)	121
MalI	GATC	3 cut(s)	135, 188, 270
MboI	GATC	3 cut(s)	133, 186, 268
MboII	GAAGA	2 cut(s)	86, 179
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	2 cut(s)	85, 231
MnlI	CCTC	8 cut(s)	37, 43, 48, 54, 57, 70, 88, 245
MseI	TTAA	2 cut(s)	197, 219
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	361, 420
MvaI	CCWGG	2 cut(s)	361, 420
MwoI	GCNNNNNNNGC	2 cut(s)	314, 386
NdeII	GATC	3 cut(s)	133, 186, 268
NlaIII	CATG	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	275
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	20, 80
Ppu21I	YACGTR	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	359, 418
PspGI	CCWGG	2 cut(s)	359, 418
PspPI	GGNCC	2 cut(s)	41, 363
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	197, 219
Sau3AI	GATC	3 cut(s)	133, 186, 268
Sau96I	GGNCC	2 cut(s)	41, 363
ScrFI	CCNGG	2 cut(s)	361, 420
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	2 cut(s)	247, 304
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	85, 231
SsiI	CCGC	2 cut(s)	279, 423
SspMI	CTAG	2 cut(s)	180, 305
StyD4I	CCNGG	2 cut(s)	359, 418
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	53, 289
TasI	AATT	2 cut(s)	85, 231
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	2 cut(s)	197, 219
Tru9I	TTAA	2 cut(s)	197, 219
TscAI	CASTG	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	17, 114, 421
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	2 cut(s)	180, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.