Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018686

Physical Location & Seq

Genomic Coordinates Reverse (-)

31353549 .. 31356038

Gene Structure 2490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG285600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCCACATCTGTTGGCCCTCCTCAGTCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGATGATGAAAGCACAAAGATATTTGCACGTAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAGCTAAACAACTGGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCAGATGATGGACCCTTTGATATTTGTAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCAGGCGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGGTTATTTTACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

8.88

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	33 - 95	3.5e-19	mRNA (guanine-N(7))-methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	96 - 194	8.6e-36	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006698.1_g000001
rosa_samantha	Rh1AG125700 Rh1BG095800 Rh1CG119300 Rh2AG403100 Rh2CG389200 Rh2DG423300 Rh5AG251400 Rh5BG253000 Rh5CG285600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	279, 525
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	228, 301
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	61, 84
AjnI	CCWGG	2 cut(s)	461, 520
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	179, 205, 238, 574
AluI	AGCT	4 cut(s)	179, 205, 238, 574
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	40, 129
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	41, 419, 465
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	419, 465
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	484
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	463, 522
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	180, 407
Bme1390I	CCNGG	2 cut(s)	463, 522
Bme18I	GGWCC	2 cut(s)	419, 465
BmgT120I	GGNCC	3 cut(s)	41, 419, 465
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	2 cut(s)	463, 522
BmsI	GCATC	2 cut(s)	247, 307
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	2 cut(s)	321, 327
BsaJI	CCNNGG	3 cut(s)	250, 492, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	218, 399, 442
Bse8I	GATNNNNATC	2 cut(s)	321, 327
BseBI	CCWGG	2 cut(s)	463, 522
BseDI	CCNNGG	3 cut(s)	250, 492, 520
BseGI	GGATG	2 cut(s)	100, 189
BseJI	GATNNNNATC	2 cut(s)	321, 327
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	30, 62, 566
BseNI	ACTGG	3 cut(s)	218, 399, 442
BseRI	GAGGAG	2 cut(s)	36, 267
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	42, 131
BsiHKAI	GWGCWC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	42, 131
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	133, 186, 268, 322
BspACI	CCGC	2 cut(s)	279, 525
BspANI	GGCC	2 cut(s)	42, 131
BspCNI	CTCAG	3 cut(s)	29, 61, 567
BspLI	GGNNCC	1 cut(s)	421
BsrI	ACTGG	3 cut(s)	218, 399, 442
BssECI	CCNNGG	3 cut(s)	250, 492, 520
BssMI	GATC	4 cut(s)	133, 186, 268, 322
BssSI	CACGAG	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	463, 522
Bst6I	CTCTTC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	247, 277, 361
BstDEI	CTNAG	4 cut(s)	16, 48, 575, 597
BstF5I	GGATG	2 cut(s)	100, 189
BstKTI	GATC	4 cut(s)	136, 189, 271, 325
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	133, 186, 268, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	2 cut(s)	463, 522
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	461, 520
BsuRI	GGCC	2 cut(s)	42, 131
BtsCI	GGATG	2 cut(s)	100, 189
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	247, 277, 361
Cfr13I	GGNCC	3 cut(s)	41, 419, 465
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	227, 300
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	1 cut(s)	276
CviQI	GTAC	2 cut(s)	227, 300
DdeI	CTNAG	4 cut(s)	16, 48, 575, 597
DpnI	GATC	4 cut(s)	135, 188, 270, 324
DpnII	GATC	4 cut(s)	133, 186, 268, 322
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	419, 465
Eco57I	CTGAAG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	461, 520
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	1 cut(s)	279
FaiI	YATR	4 cut(s)	141, 243, 277, 384
FatI	CATG	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	322
FokI	GGATG	2 cut(s)	107, 176
FspBI	CTAG	2 cut(s)	180, 407
HaeIII	GGCC	2 cut(s)	42, 131
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	2 cut(s)	20, 80
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	227, 348, 468
Hpy188I	TCNGA	2 cut(s)	19, 186
Hpy188III	TCNNGA	2 cut(s)	164, 266
Hpy8I	GTNNAC	3 cut(s)	227, 348, 468
HpyAV	CCTTC	1 cut(s)	575
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	5 cut(s)	119, 146, 275, 359, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	4 cut(s)	16, 48, 575, 597
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	133, 186, 268, 322
LweI	GCATC	2 cut(s)	247, 307
MaeI	CTAG	2 cut(s)	180, 407
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	135, 188, 270, 324
MboI	GATC	4 cut(s)	133, 186, 268, 322
MboII	GAAGA	3 cut(s)	86, 179, 302
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	2 cut(s)	85, 231
MnlI	CCTC	7 cut(s)	37, 48, 54, 57, 70, 245, 379
MseI	TTAA	2 cut(s)	197, 219
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	463, 522
MvaI	CCWGG	2 cut(s)	463, 522
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	4 cut(s)	133, 186, 268, 322
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	275
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	20, 80
Ppu21I	YACGTR	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	461, 520
PspGI	CCWGG	2 cut(s)	461, 520
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	3 cut(s)	41, 419, 465
RsaI	GTAC	2 cut(s)	228, 301
RsaNI	GTAC	2 cut(s)	227, 300
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	197, 219
Sau3AI	GATC	4 cut(s)	133, 186, 268, 322
Sau96I	GGNCC	3 cut(s)	41, 419, 465
ScrFI	CCNGG	2 cut(s)	463, 522
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	9 cut(s)	59, 124, 181, 207, 240, 390, 576, 586, 598
SfaNI	GCATC	2 cut(s)	247, 307
SinI	GGWCC	2 cut(s)	419, 465
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	85, 231
SsiI	CCGC	2 cut(s)	279, 525
SspMI	CTAG	2 cut(s)	180, 407
StyD4I	CCNGG	2 cut(s)	461, 520
StyI	CCWWGG	1 cut(s)	492
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	53, 391
TasI	AATT	2 cut(s)	85, 231
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	2 cut(s)	197, 219
Tru9I	TTAA	2 cut(s)	197, 219
TscAI	CASTG	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	17, 114, 523
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	419, 465
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	2 cut(s)	180, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.