Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018686

Physical Location & Seq

Genomic Coordinates Forward (+)

16746265 .. 16750190

Gene Structure 3926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG095800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAACGAGGCTACTCAGAGTCGTCCTCAATCTCTGTTGGGCCTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAAGATGAGAGCACAAAAATTTTTGCACGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAGCTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGCAAGATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCAGGCGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGGTACACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTTTTGAGGAAGCGGGGACAACCTGATCGGACTCAACCAAATGGTAGAAGAGATAAAGGGAAGATGCATATATCAAAAGAGGACATGTTGAACATTGAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

245

Amino Acids

28.02

Weight (kDa)

8.97

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 95	3.6e-19	mRNA (guanine-N(7))-methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	96 - 194	3.8e-36	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018686)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006698.1_g000001
rosa_samantha	Rh1AG125700 Rh1BG095800 Rh1CG119300 Rh2AG403100 Rh2CG389200 Rh2DG423300 Rh5AG251400 Rh5BG253000 Rh5CG285600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	279, 525, 646
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	85, 111
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	301, 586, 623
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	4 cut(s)	61, 84, 724, 731
AjnI	CCWGG	2 cut(s)	461, 520
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	179, 205, 238, 574
AluI	AGCT	4 cut(s)	179, 205, 238, 574
Alw21I	GWGCWC	2 cut(s)	107, 484
Alw26I	GTCTC	1 cut(s)	369
AoxI	GGCC	2 cut(s)	41, 129
ApoI	RAATTY	2 cut(s)	85, 111
AspS9I	GGNCC	2 cut(s)	41, 465
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	107, 484
BceAI	ACGGC	1 cut(s)	321
BciT130I	CCWGG	2 cut(s)	463, 522
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	3 cut(s)	180, 407, 736
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	463, 522
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	41, 465
BmrFI	CCNGG	2 cut(s)	463, 522
BmsI	GCATC	4 cut(s)	247, 307, 406, 687
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BsaBI	GATNNNNATC	2 cut(s)	321, 327
BsaJI	CCNNGG	3 cut(s)	250, 492, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	218, 399, 442
Bse8I	GATNNNNATC	2 cut(s)	321, 327
BseBI	CCWGG	2 cut(s)	463, 522
BseDI	CCNNGG	3 cut(s)	250, 492, 520
BseGI	GGATG	1 cut(s)	189
BseJI	GATNNNNATC	2 cut(s)	321, 327
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	30, 566
BseNI	ACTGG	3 cut(s)	218, 399, 442
BseRI	GAGGAG	2 cut(s)	36, 267
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	43, 131
BsiHKAI	GWGCWC	2 cut(s)	107, 484
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	2 cut(s)	43, 131
Bsp1286I	GDGCHC	2 cut(s)	107, 484
Bsp143I	GATC	5 cut(s)	133, 186, 268, 322, 658
BspACI	CCGC	3 cut(s)	279, 525, 646
BspANI	GGCC	2 cut(s)	43, 131
BspCNI	CTCAG	2 cut(s)	29, 567
BsrI	ACTGG	3 cut(s)	218, 399, 442
BssECI	CCNNGG	3 cut(s)	250, 492, 520
BssMI	GATC	5 cut(s)	133, 186, 268, 322, 658
BssSI	CACGAG	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	463, 522
Bst6I	CTCTTC	2 cut(s)	69, 676
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	247, 277, 361
BstDEI	CTNAG	2 cut(s)	16, 575
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	5 cut(s)	136, 189, 271, 325, 661
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	5 cut(s)	133, 186, 268, 322, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 488
BstNI	CCWGG	2 cut(s)	463, 522
BstNSI	RCATGY	2 cut(s)	279, 721
BstSCI	CCNGG	2 cut(s)	461, 520
BsuRI	GGCC	2 cut(s)	43, 131
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	247, 277, 361
Cfr13I	GGNCC	2 cut(s)	41, 465
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	300, 585, 622
CviAII	CATG	2 cut(s)	276, 718
CviQI	GTAC	3 cut(s)	300, 585, 622
DdeI	CTNAG	2 cut(s)	16, 575
DpnI	GATC	5 cut(s)	135, 188, 270, 324, 660
DpnII	GATC	5 cut(s)	133, 186, 268, 322, 658
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	69, 676
EarI	CTCTTC	2 cut(s)	69, 676
EciI	GGCGGA	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	461, 520
EcoT14I	CCWWGG	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	279, 721
FaiI	YATR	7 cut(s)	141, 243, 277, 384, 702, 704, 719
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	2 cut(s)	275, 717
FauI	CCCGC	1 cut(s)	639
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	3 cut(s)	180, 407, 736
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	43, 131
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	2 cut(s)	279, 721
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	20, 80, 664
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	348, 468, 587
Hpy188I	TCNGA	3 cut(s)	19, 186, 663
Hpy188III	TCNNGA	2 cut(s)	164, 266
Hpy8I	GTNNAC	3 cut(s)	348, 468, 587
HpyAV	CCTTC	1 cut(s)	575
HpyCH4V	TGCA	8 cut(s)	119, 146, 275, 359, 419, 435, 454, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 488
HpyF3I	CTNAG	2 cut(s)	16, 575
Hsp92II	CATG	2 cut(s)	279, 721
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	133, 186, 268, 322, 658
LweI	GCATC	4 cut(s)	247, 307, 406, 687
MaeI	CTAG	3 cut(s)	180, 407, 736
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	5 cut(s)	135, 188, 270, 324, 660
MboI	GATC	5 cut(s)	133, 186, 268, 322, 658
MboII	GAAGA	6 cut(s)	86, 107, 179, 302, 693, 706
MhlI	GDGCHC	2 cut(s)	107, 484
MluCI	AATT	3 cut(s)	85, 111, 231
MlyI	GAGTC	2 cut(s)	29, 658
MnlI	CCTC	9 cut(s)	37, 48, 54, 57, 70, 245, 379, 633, 706
Mph1103I	ATGCAT	1 cut(s)	702
MseI	TTAA	4 cut(s)	197, 207, 219, 230
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	463, 522
MvaI	CCWGG	2 cut(s)	463, 522
MwoI	GCNNNNNNNGC	2 cut(s)	416, 488
NdeII	GATC	5 cut(s)	133, 186, 268, 322, 658
NlaIII	CATG	2 cut(s)	279, 721
NmeAIII	GCCGAG	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	702
NspI	RCATGY	2 cut(s)	279, 721
PaeI	GCATGC	1 cut(s)	279
PciI	ACATGT	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	2 cut(s)	28, 658
PpsI	GAGTC	2 cut(s)	28, 658
PscI	ACATGT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	461, 520
PspGI	CCWGG	2 cut(s)	461, 520
PspPI	GGNCC	2 cut(s)	41, 465
RsaI	GTAC	3 cut(s)	301, 586, 623
RsaNI	GTAC	3 cut(s)	300, 585, 622
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	197, 207, 219, 230
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	5 cut(s)	133, 186, 268, 322, 658
Sau96I	GGNCC	2 cut(s)	41, 465
SchI	GAGTC	2 cut(s)	29, 658
ScrFI	CCNGG	2 cut(s)	463, 522
SduI	GDGCHC	2 cut(s)	107, 484
SetI	ASST	8 cut(s)	59, 181, 207, 240, 390, 576, 586, 658
SfaNI	GCATC	4 cut(s)	247, 307, 406, 687
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	85, 111, 231
SsiI	CCGC	3 cut(s)	279, 525, 646
SspMI	CTAG	3 cut(s)	180, 407, 736
StyD4I	CCNGG	2 cut(s)	461, 520
StyI	CCWWGG	1 cut(s)	492
TaqI	TCGA	2 cut(s)	53, 391
TasI	AATT	3 cut(s)	85, 111, 231
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	4 cut(s)	197, 207, 219, 230
Tru9I	TTAA	4 cut(s)	197, 207, 219, 230
TscAI	CASTG	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	17, 523, 615
TspGWI	ACGGA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	2 cut(s)	85, 111
XceI	RCATGY	2 cut(s)	279, 721
XspI	CTAG	3 cut(s)	180, 407, 736
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.