Rh2DG423300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0 methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
61312347 .. 61316568
4222 bp
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UTR
Exon/CDS
Intron
Rh2DG423300.1

Sequence Viewer

Length: 297 bp
ATGAAACGAGGCTACTCAGAATCGTCCTCAACCTCTGTTAGGCCTCCTCAATCGAGATTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAGGATGAGAGCACAAAGCTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCACCGAGGAGATGCTGTTCTTGATCTTGCATGCAGCAAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGGCTGTTCTACTAAATTTCTTGGAGCAAGTAGTAGAACACTCACGTTAG

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

5.28

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 85, 262
AfiI CCNNNNNNNGG 2 cut(s) 39, 76
AgsI TTSAA 2 cut(s) 61, 84
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 2 cut(s) 112, 145
AluI AGCT 2 cut(s) 112, 145
Alw21I GWGCWC 1 cut(s) 107
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 186
ApoI RAATTY 2 cut(s) 85, 262
AsuHPI GGTGA 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 154, 211
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 76
Bse1I ACTGG 2 cut(s) 125, 204
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 39, 76
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 125, 204
BseRI GAGGAG 2 cut(s) 36, 174
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 39, 76
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 29
BsrI ACTGG 2 cut(s) 125, 204
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 16
BstENI CCTNNNNNAGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 184
CviAII CATG 1 cut(s) 183
CviJI RGCY 7 cut(s) 12, 43, 65, 112, 145, 209, 251
CviKI_1 RGCY 7 cut(s) 12, 43, 65, 112, 145, 209, 251
DdeI CTNAG 1 cut(s) 16
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 186
FaiI YATR 2 cut(s) 150, 184
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 20, 57, 80
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 54, 173
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 4 cut(s) 182, 186, 224, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 5 cut(s) 84, 106, 185, 233, 260
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 2 cut(s) 154, 211
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 292
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 3 cut(s) 85, 138, 262
MnlI CCTC 7 cut(s) 37, 43, 54, 57, 70, 88, 152
MseI TTAA 3 cut(s) 114, 126, 137
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 186
NspI RCATGY 1 cut(s) 186
PaeI GCATGC 1 cut(s) 186
PceI AGGCCT 1 cut(s) 43
PfeI GAWTC 3 cut(s) 20, 57, 80
PkrI GCNGC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 114, 126, 137
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 35, 114, 147, 195, 295
SfaNI GCATC 2 cut(s) 154, 211
SphI GCATGC 1 cut(s) 186
Sse9I AATT 3 cut(s) 85, 138, 262
SseBI AGGCCT 1 cut(s) 43
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 246
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 53, 196
TasI AATT 3 cut(s) 85, 138, 262
TfiI GAWTC 3 cut(s) 20, 57, 80
Tru1I TTAA 3 cut(s) 114, 126, 137
Tru9I TTAA 3 cut(s) 114, 126, 137
TseI GCWGC 1 cut(s) 186
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 37
XapI RAATTY 2 cut(s) 85, 262
XceI RCATGY 1 cut(s) 186
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.