Rmu_sc0006783.1_g000003

2-methylene-furan-3-one reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006783.1
OG0018917
Physical Location & Seq
Forward (+)
15762 .. 16666
905 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
atggctgcagctccaagtgattccataccctctgtatatggggcttgggtctattcagagtatggaaaaactgcagatgttctgaaatttgatccaaatgtagctgttcctgaaattaaagaggcccaggtgctgatcaaggtagttgctgcttctcttaacccaattgatttcatgagagctcttagtttcttcaaggacatagagggtgatagtcccttacctgtggacaattccaggtatgatgtggctggtgtggtggtgaaggtaggaagccaagtgcagaagtttaaggtgggggatgaagtatatgcttgtttgagtaatagcattgagattccccaatatcatgctaagaatagccatggggatctcaatgagaaagcattggtgaaaccaaacaggctggggtctttggcagagtacactgctgcaggagaaaccatgttggctctcaaacccaaaaatctgagctttattgaagcatgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

163

Amino Acids

17.62

Weight (kDa)

5.18

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 41 - 154 3.5e-13 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018917)

Species Orthologous Gene IDs
prunus_persica Prupe.3G284400_v2.0.a1
rosa_laevigata RLG00000022017
rosa_multiflora Rmu_sc0006783.1_g000003
rosa_roxburghii Rroxscaffold_2G00080620
rosa_rugosa Rorug02G0554800
rosa_samantha Rh2AG628900 Rh2AG635700 Rh2BG649100 Rh2CG608000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 86, 378
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 425
AgsI TTSAA 2 cut(s) 196, 482
AjnI CCWGG 2 cut(s) 126, 236
AluBI AGCT 4 cut(s) 11, 104, 182, 474
AluI AGCT 4 cut(s) 11, 104, 182, 474
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 2 cut(s) 86, 378
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 4 cut(s) 5, 8, 149, 431
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 3 cut(s) 221, 274, 403
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 20, 136, 418
BciT130I CCWGG 2 cut(s) 128, 238
BclI TGATCA 1 cut(s) 135
BfaI CTAG 1 cut(s) 490
BfmI CTRYAG 3 cut(s) 6, 72, 432
BisI GCNGC 4 cut(s) 6, 9, 150, 432
BlsI GCNGC 4 cut(s) 7, 10, 151, 433
Bme1390I CCNGG 2 cut(s) 128, 238
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 128, 238
BsaJI CCNNGG 2 cut(s) 126, 364
BseBI CCWGG 2 cut(s) 128, 238
BseDI CCNNGG 2 cut(s) 126, 364
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 461
BseXI GCAGC 3 cut(s) 20, 136, 418
BseYI CCCAGC 1 cut(s) 406
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 184
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 91, 135, 370
Bsp19I CCATGG 1 cut(s) 364
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 462
BspHI TCATGA 1 cut(s) 174
BspMAI CTGCAG 3 cut(s) 10, 76, 436
BspPI GGATC 2 cut(s) 86, 378
BssECI CCNNGG 2 cut(s) 126, 364
BssMI GATC 3 cut(s) 91, 135, 370
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 128, 238
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 3 cut(s) 185, 354, 470
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 94, 138, 373
BstMBI GATC 3 cut(s) 91, 135, 370
BstNI CCWGG 2 cut(s) 128, 238
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 126, 236
BstSFI CTRYAG 3 cut(s) 6, 72, 432
BstV1I GCAGC 3 cut(s) 20, 136, 418
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 487
CaiI CAGNNNCTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 424
CviAII CATG 5 cut(s) 175, 350, 365, 445, 486
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 3 cut(s) 185, 354, 470
DpnI GATC 3 cut(s) 93, 137, 372
DpnII GATC 3 cut(s) 91, 135, 370
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 126, 236
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 5 cut(s) 178, 353, 368, 448, 489
FaqI GGGAC 1 cut(s) 201
FatI CATG 5 cut(s) 174, 349, 364, 444, 485
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 6, 9, 150, 432
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 6, 9, 150, 432
FspBI CTAG 1 cut(s) 490
GluI GCNGC 4 cut(s) 6, 9, 150, 432
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 5 cut(s) 178, 353, 368, 448, 489
HinfI GANTC 2 cut(s) 20, 337
HphI GGTGA 3 cut(s) 221, 274, 403
Hpy166II GTNNAC 2 cut(s) 229, 426
Hpy188I TCNGA 3 cut(s) 58, 84, 471
Hpy188III TCNNGA 2 cut(s) 110, 175
Hpy8I GTNNAC 2 cut(s) 229, 426
HpyAV CCTTC 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 8, 74, 283, 434
HpyF3I CTNAG 3 cut(s) 185, 354, 470
Hsp92II CATG 5 cut(s) 178, 353, 368, 448, 489
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 91, 135, 370
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 20, 136, 418
MaeI CTAG 1 cut(s) 490
MalI GATC 3 cut(s) 93, 137, 372
MboI GATC 3 cut(s) 91, 135, 370
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 4 cut(s) 86, 114, 165, 232
MnlI CCTC 3 cut(s) 40, 115, 199
MseI TTAA 3 cut(s) 117, 159, 291
MspR9I CCNGG 2 cut(s) 128, 238
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 2 cut(s) 128, 238
NcoI CCATGG 1 cut(s) 364
NdeII GATC 3 cut(s) 91, 135, 370
NlaIII CATG 5 cut(s) 178, 353, 368, 448, 489
NspI RCATGY 1 cut(s) 489
PaeI GCATGC 1 cut(s) 489
PagI TCATGA 1 cut(s) 174
PfeI GAWTC 2 cut(s) 20, 337
PkrI GCNGC 4 cut(s) 7, 10, 151, 433
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 126, 236
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 2 cut(s) 126, 236
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 3 cut(s) 10, 76, 436
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 3 cut(s) 117, 159, 291
SatI GCNGC 4 cut(s) 6, 9, 150, 432
Sau3AI GATC 3 cut(s) 91, 135, 370
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 128, 238
SduI GDGCHC 1 cut(s) 184
SfcI CTRYAG 3 cut(s) 6, 72, 432
SphI GCATGC 1 cut(s) 489
Sse9I AATT 4 cut(s) 86, 114, 165, 232
SspMI CTAG 1 cut(s) 490
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 126, 236
StyI CCWWGG 1 cut(s) 364
TasI AATT 4 cut(s) 86, 114, 165, 232
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 2 cut(s) 20, 337
Tru1I TTAA 3 cut(s) 117, 159, 291
Tru9I TTAA 3 cut(s) 117, 159, 291
TscAI CASTG 1 cut(s) 433
TseI GCWGC 4 cut(s) 5, 8, 149, 431
TspDTI ATGAA 2 cut(s) 163, 318
TspRI CASTG 1 cut(s) 433
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.