Rh2CG608000

2-methylene-furan-3-one reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018917
Physical Location & Seq
Forward (+)
78373485 .. 78374405
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG608000.1

Sequence Viewer

Length: 489 bp
ATGGCTGCAGCTCCAAGTGATTCCATACCCTCTGTATATGGGGCTTGGGTCTATTCAGAGTATGGAAAAACTGCAGATGTTCTGAAATTTGATCCAAATGTAGCTGTTCCTGAAATTAAAGAGGCCCAGGTGCTGATCAAGGTAGTTGCTGCTTCTCTTAACCCAATTGATTTCATGAGAGCTCTTAGTTTCTTCAAGGACATAGAGGACAATTCCAGGTATGATGTGGCTGGTGTGGTGGTGAAGGTAGGAAGCCAAGTGCAGAAGTTTAAGGTGGGGGATGAAGTATATGCTTGTTTGAGTAATAGCATTGAGATTCCCCAATATCATGCTAAGAATAGCCATGGGGATCTCAATGAGAAAGCATTGGTGAAACCAAACAGGCTGGGGTCTTTGGCAGAGTACACTGCTGCAGGAGAAACCGTGTTGGCTCTCAAACCCAAAAATCTGAGCTTTATTGAAGCATGCTGGCCTTCCCTTGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

162

Amino Acids

17.63

Weight (kDa)

5.39

Isoelectric Point (pI)

30.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 41 - 147 2.8e-12 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018917)

Species Orthologous Gene IDs
prunus_persica Prupe.3G284400_v2.0.a1
rosa_laevigata RLG00000022017
rosa_multiflora Rmu_sc0006783.1_g000003
rosa_roxburghii Rroxscaffold_2G00080620
rosa_rugosa Rorug02G0554800
rosa_samantha Rh2AG628900 Rh2AG635700 Rh2BG649100 Rh2CG608000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 86, 357
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 196, 461
AjnI CCWGG 2 cut(s) 126, 215
AluBI AGCT 4 cut(s) 11, 104, 182, 453
AluI AGCT 4 cut(s) 11, 104, 182, 453
Alw21I GWGCWC 1 cut(s) 184
AlwI GGATC 2 cut(s) 86, 357
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 2 cut(s) 123, 470
ApeKI GCWGC 4 cut(s) 5, 8, 149, 410
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 253, 382
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 20, 136, 397
BciT130I CCWGG 2 cut(s) 128, 217
BclI TGATCA 1 cut(s) 135
BfmI CTRYAG 3 cut(s) 6, 72, 411
BisI GCNGC 4 cut(s) 6, 9, 150, 411
BlsI GCNGC 4 cut(s) 7, 10, 151, 412
Bme1390I CCNGG 2 cut(s) 128, 217
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 128, 217
BsaJI CCNNGG 3 cut(s) 126, 343, 478
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 479
BseBI CCWGG 2 cut(s) 128, 217
BseDI CCNNGG 3 cut(s) 126, 343, 478
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 20, 136, 397
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 2 cut(s) 125, 472
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 479
BsnI GGCC 2 cut(s) 125, 472
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 91, 135, 349
Bsp19I CCATGG 1 cut(s) 343
BspANI GGCC 2 cut(s) 125, 472
BspCNI CTCAG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 174
BspMAI CTGCAG 3 cut(s) 10, 76, 415
BspPI GGATC 2 cut(s) 86, 357
BssECI CCNNGG 3 cut(s) 126, 343, 478
BssMI GATC 3 cut(s) 91, 135, 349
BssT1I CCWWGG 2 cut(s) 343, 478
Bst2UI CCWGG 2 cut(s) 128, 217
Bst4CI ACNGT 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 466, 470
BstDEI CTNAG 3 cut(s) 185, 333, 449
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 3 cut(s) 94, 138, 352
BstMBI GATC 3 cut(s) 91, 135, 349
BstNI CCWGG 2 cut(s) 128, 217
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 126, 215
BstSFI CTRYAG 3 cut(s) 6, 72, 411
BstV1I GCAGC 3 cut(s) 20, 136, 397
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 2 cut(s) 125, 472
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 466, 470
CaiI CAGNNNCTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 403
CviAII CATG 4 cut(s) 175, 329, 344, 465
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 185, 333, 449
DpnI GATC 3 cut(s) 93, 137, 351
DpnII GATC 3 cut(s) 91, 135, 349
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 343, 478
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 126, 215
EcoT14I CCWWGG 2 cut(s) 343, 478
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 343, 478
FaeI CATG 4 cut(s) 178, 332, 347, 468
FatI CATG 4 cut(s) 174, 328, 343, 464
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 6, 9, 150, 411
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 4 cut(s) 6, 9, 150, 411
GluI GCNGC 4 cut(s) 6, 9, 150, 411
GsaI CCCAGC 1 cut(s) 389
HaeIII GGCC 2 cut(s) 125, 472
Hin1II CATG 4 cut(s) 178, 332, 347, 468
HinfI GANTC 2 cut(s) 20, 316
HphI GGTGA 2 cut(s) 253, 382
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 3 cut(s) 58, 84, 450
Hpy188III TCNNGA 2 cut(s) 110, 175
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 238, 483
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4V TGCA 4 cut(s) 8, 74, 262, 413
HpyF3I CTNAG 3 cut(s) 185, 333, 449
Hsp92II CATG 4 cut(s) 178, 332, 347, 468
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 91, 135, 349
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 20, 136, 397
MalI GATC 3 cut(s) 93, 137, 351
MboI GATC 3 cut(s) 91, 135, 349
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 4 cut(s) 86, 114, 165, 211
MnlI CCTC 3 cut(s) 40, 115, 199
MseI TTAA 3 cut(s) 117, 159, 270
MspR9I CCNGG 2 cut(s) 128, 217
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 2 cut(s) 128, 217
NcoI CCATGG 1 cut(s) 343
NdeII GATC 3 cut(s) 91, 135, 349
NlaIII CATG 4 cut(s) 178, 332, 347, 468
NspI RCATGY 1 cut(s) 468
PaeI GCATGC 1 cut(s) 468
PagI TCATGA 1 cut(s) 174
PfeI GAWTC 2 cut(s) 20, 316
PkrI GCNGC 4 cut(s) 7, 10, 151, 412
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 126, 215
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 2 cut(s) 126, 215
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 3 cut(s) 10, 76, 415
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 3 cut(s) 117, 159, 270
SatI GCNGC 4 cut(s) 6, 9, 150, 411
Sau3AI GATC 3 cut(s) 91, 135, 349
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 128, 217
SduI GDGCHC 1 cut(s) 184
SetI ASST 9 cut(s) 13, 106, 132, 144, 184, 221, 249, 276, 455
SfcI CTRYAG 3 cut(s) 6, 72, 411
SphI GCATGC 1 cut(s) 468
Sse9I AATT 4 cut(s) 86, 114, 165, 211
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 126, 215
StyI CCWWGG 2 cut(s) 343, 478
TaaI ACNGT 1 cut(s) 424
TasI AATT 4 cut(s) 86, 114, 165, 211
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 2 cut(s) 20, 316
Tru1I TTAA 3 cut(s) 117, 159, 270
Tru9I TTAA 3 cut(s) 117, 159, 270
TscAI CASTG 1 cut(s) 412
TseI GCWGC 4 cut(s) 5, 8, 149, 410
TspDTI ATGAA 2 cut(s) 163, 297
TspRI CASTG 1 cut(s) 412
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.