Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001188

Physical Location & Seq

Genomic Coordinates Forward (+)

25786034 .. 25789009

Gene Structure 2976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G284400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTGCAGCTTTAAGTGATTCCATACCCTCTGTAAACAAGGCTTGGGTGTACTCAGAATATGGACAGTCTGCAGATGTTTTGAAATTTGATCCAAATGTTGCTGTGCCTGAAATAAAGGAAGACCAGGTGCTCATCAAAGTGGTTGCTGCATCTCTTAACCCAATTGATTTCAAGAGGATGCTTGGGTATTTCAAGGAGATCGACTCTCCTCCACCTACGGTTCCTGGGTATGATGTTGCTGGTGTGGTGGTGAAGGTGGGAAGCCAAGTGACGAAGTTTAAGGTGGGGGATGAAGTATATGGGGATCTCAATGAGAATGCTTTGGTGAACCCAAAAAAGTTTGGGTCTTTGGCAGAGTACACTGCTTCAGAAGAAAGAGTGTTGGCTCTCAAACCCCAAAATCTGAGTTTTGTTGAAGCTGCTAGCCTTCCCCTGGCTCTGGAGACCGCCTATGAAGGGCTTGAACGGACTGAGTTTTCTGCTGGTAAATCTATTCTTGTTTTAGGAGGCGCTGGGGGAGTGGGAACACATGTTATTCAGCTAGCGAAACATGTTTTTGGTGCTTCAAAAGTAGCAGCTACTGCAAGCACTAAAAAACTGGATTTGCTGAGAAGCTTGGGTGCTGATTTGGCTATTGATTACACCAAGGATAACTTTGAAGACCTGCCTGAGAAATTTGATGTGGTATATGATGCAGTTGGGCAGTCTGACAGGGCAGTGAAGGCAGTGAAAGAAAACGGGAAGGTTGTAACAATCTTTGGTTCAGTAACGCCACCAGCGCTCACATTTGTGCTGACTTCAACTGGGACTATATTGGAGAAGCTGAAGCCATACTTGGAGAGTGGGAAAGTGAAGCCGGTGCTTGATCCCACAAGCCCATATCCCTTTTCTAAGACTATTGAAGCATTTGCCTACCTTGAAACCTCCAGAGCTACAGGAAAGGTCGTTGTGCATCCCATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

323

Amino Acids

34.44

Weight (kDa)

5.44

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23740
fragaria_vesca	FvH4_4g34500 FvH4_6g50700
malus_domestica	MD09G1033200.v1.1 MD09G1033600.v1.1 MD09G1033700.v1.1 MD09G1034000.v1.1 MD13G1092200.v1.1 MD16G1092800.v1.1
prunus_persica	Prupe.1G253500_v2.0.a1 Prupe.3G284300_v2.0.a1 Prupe.3G284400_v2.0.a1 Prupe.3G284700_v2.0.a1 Prupe.3G284800_v2.0.a1 Prupe.3G284900_v2.0.a1
pyrus_communis	pycom111g02680 pycom111g02700 pycom13g08010 pycom16g07920
rosa_chinensis	RchiOBHm_Chr2g0171461 RchiOBHm_Chr2g0171481 RchiOBHm_Chr2g0171491 RchiOBHm_Chr2g0172531 RchiOBHm_Chr4g0443881
rosa_laevigata	RLG00000005881 RLG00000022016 RLG00000022019 RLG00000022020 RLG00000022113 RLG00000023107
rosa_multiflora	Rmu_sc0000912.1_g000009 Rmu_sc0006783.1_g000002 Rmu_sc0006783.1_g000005 Rmu_sc0010179.1_g000003 Rmu_sc0019062.1_g000006
rosa_roxburghii	Rroxscaffold_2G00080590 Rroxscaffold_2G00080610 Rroxscaffold_2G00080630 Rroxscaffold_5G00384440
rosa_rugosa	Rorug02G0554600 Rorug02G0554700 Rorug02G0554800 Rorug04G0348000
rosa_samantha	Rh2AG628800 Rh2AG629000 Rh2BG639300 Rh2BG639500 Rh2BG639600 Rh2CG607900 Rh2CG608100 Rh2CG608200 Rh2CG615900 Rh4DG414600
rosa_wichuraiana	Rw2G052090 Rw2G052100 Rw2G052590 Rw4G035080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	675
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	3 cut(s)	86, 315, 863
AcsI	RAATTY	2 cut(s)	86, 677
AcuI	CTGAAG	2 cut(s)	354, 848
AfaI	GTAC	2 cut(s)	53, 362
AfeI	AGCGCT	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	436, 442, 459
AflIII	ACRYGT	2 cut(s)	532, 553
AjnI	CCWGG	3 cut(s)	126, 226, 435
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AleI	CACNNNNGTG	1 cut(s)	791
AluBI	AGCT	7 cut(s)	11, 422, 544, 581, 618, 826, 935
AluI	AGCT	7 cut(s)	11, 422, 544, 581, 618, 826, 935
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	86, 315, 863
AlwNI	CAGNNNCTG	1 cut(s)	584
Aor51HI	AGCGCT	1 cut(s)	783
ApeKI	GCWGC	5 cut(s)	5, 8, 149, 422, 578
ApoI	RAATTY	2 cut(s)	86, 677
AspLEI	GCGC	2 cut(s)	515, 784
AsuHPI	GGTGA	2 cut(s)	265, 340
AsuNHI	GCTAGC	2 cut(s)	425, 544
BbsI	GAAGAC	2 cut(s)	129, 669
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	20, 136, 409, 590
BccI	CCATC	1 cut(s)	968
BciT130I	CCWGG	3 cut(s)	128, 228, 437
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	426, 545
BfmI	CTRYAG	3 cut(s)	6, 72, 936
BfoI	RGCGCY	2 cut(s)	516, 785
BfuAI	ACCTGC	1 cut(s)	675
BisI	GCNGC	5 cut(s)	6, 9, 150, 423, 579
BlsI	GCNGC	5 cut(s)	7, 10, 151, 424, 580
Bme1390I	CCNGG	3 cut(s)	128, 228, 437
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	3 cut(s)	128, 228, 437
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	4 cut(s)	161, 171, 685, 964
BmtI	GCTAGC	2 cut(s)	429, 548
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	2 cut(s)	129, 669
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	2 cut(s)	464, 913
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	227, 435, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	436, 442, 459
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	606, 811
BseBI	CCWGG	3 cut(s)	128, 228, 437
BseDI	CCNNGG	3 cut(s)	227, 435, 648
BseGI	GGATG	4 cut(s)	186, 298, 955, 960
BseLI	CCNNNNNNNGG	3 cut(s)	436, 442, 459
BseMII	CTCAG	5 cut(s)	69, 398, 465, 602, 663
BseNI	ACTGG	2 cut(s)	606, 811
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	20, 136, 409, 590
BseYI	CCCAGC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	860
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	3 cut(s)	436, 442, 459
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	91, 201, 307, 868
BspACI	CCGC	1 cut(s)	450
BspCNI	CTCAG	5 cut(s)	68, 399, 466, 603, 664
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	2 cut(s)	10, 76
BspMI	ACCTGC	1 cut(s)	675
BspOI	GCTAGC	2 cut(s)	429, 548
BspPI	GGATC	3 cut(s)	86, 315, 863
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	859
BsrI	ACTGG	2 cut(s)	606, 811
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	3 cut(s)	227, 435, 648
BssMI	GATC	4 cut(s)	91, 201, 307, 868
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	3 cut(s)	128, 228, 437
Bst4CI	ACNGT	2 cut(s)	69, 223
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	427, 546, 589
BstDEI	CTNAG	6 cut(s)	55, 407, 474, 611, 672, 894
BstF5I	GGATG	4 cut(s)	186, 298, 955, 960
BstH2I	RGCGCY	2 cut(s)	516, 785
BstHHI	GCGC	2 cut(s)	515, 784
BstKTI	GATC	4 cut(s)	94, 204, 310, 871
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	4 cut(s)	91, 201, 307, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	584, 632, 725, 781
BstNI	CCWGG	3 cut(s)	128, 228, 437
BstNSI	RCATGY	2 cut(s)	536, 557
BstSCI	CCNGG	3 cut(s)	126, 226, 435
BstSFI	CTRYAG	3 cut(s)	6, 72, 936
BstV1I	GCAGC	4 cut(s)	20, 136, 409, 590
BstV2I	GAAGAC	2 cut(s)	129, 669
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtsCI	GGATG	4 cut(s)	186, 298, 955, 960
BtsI	GCAGTG	3 cut(s)	363, 726, 735
BtsIMutI	CAGTG	3 cut(s)	363, 726, 735
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	3 cut(s)	427, 546, 589
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	2 cut(s)	515, 784
Cfr10I	RCCGGY	1 cut(s)	859
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	52, 361
CviAII	CATG	2 cut(s)	533, 554
CviQI	GTAC	2 cut(s)	52, 361
DdeI	CTNAG	6 cut(s)	55, 407, 474, 611, 672, 894
DpnI	GATC	4 cut(s)	93, 203, 309, 870
DpnII	GATC	4 cut(s)	91, 201, 307, 868
Eco130I	CCWWGG	1 cut(s)	648
Eco31I	GGTCTC	1 cut(s)	440
Eco47III	AGCGCT	1 cut(s)	783
Eco57I	CTGAAG	2 cut(s)	354, 848
EcoRII	CCWGG	3 cut(s)	126, 226, 435
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	536, 557
FalI	AAGNNNNNCTT	4 cut(s)	641, 673, 821, 853
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	2 cut(s)	532, 553
Fnu4HI	GCNGC	5 cut(s)	6, 9, 150, 423, 579
FokI	GGATG	4 cut(s)	193, 305, 942, 947
Fsp4HI	GCNGC	5 cut(s)	6, 9, 150, 423, 579
FspBI	CTAG	2 cut(s)	426, 545
GlaI	GCGC	2 cut(s)	514, 783
GluI	GCNGC	5 cut(s)	6, 9, 150, 423, 579
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	2 cut(s)	464, 913
HaeII	RGCGCY	2 cut(s)	516, 785
HapII	CCGG	1 cut(s)	860
HhaI	GCGC	2 cut(s)	515, 784
Hin1II	CATG	2 cut(s)	536, 557
Hin6I	GCGC	2 cut(s)	513, 782
HinP1I	GCGC	2 cut(s)	513, 782
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	20, 206
HpaII	CCGG	1 cut(s)	860
HphI	GGTGA	2 cut(s)	265, 340
Hpy166II	GTNNAC	4 cut(s)	37, 52, 331, 363
Hpy188I	TCNGA	4 cut(s)	58, 373, 408, 712
Hpy188III	TCNNGA	3 cut(s)	175, 443, 930
Hpy8I	GTNNAC	4 cut(s)	37, 52, 331, 363
HpyAV	CCTTC	5 cut(s)	250, 440, 452, 718, 739
HpyCH4III	ACNGT	2 cut(s)	69, 223
HpyCH4V	TGCA	6 cut(s)	8, 74, 152, 587, 698, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	584, 632, 725, 781
HpyF3I	CTNAG	6 cut(s)	55, 407, 474, 611, 672, 894
Hsp92II	CATG	2 cut(s)	536, 557
HspAI	GCGC	2 cut(s)	513, 782
Kzo9I	GATC	4 cut(s)	91, 201, 307, 868
Lsp1109I	GCAGC	4 cut(s)	20, 136, 409, 590
LweI	GCATC	4 cut(s)	161, 171, 685, 964
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	2 cut(s)	426, 545
MaeIII	GTNAC	3 cut(s)	271, 751, 769
MalI	GATC	4 cut(s)	93, 203, 309, 870
MboI	GATC	4 cut(s)	91, 201, 307, 868
MboII	GAAGA	3 cut(s)	134, 386, 674
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	86, 165, 677
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	40, 171, 222, 503, 937
MseI	TTAA	4 cut(s)	14, 159, 282, 967
MslI	CAYNNNNRTG	2 cut(s)	140, 791
MspI	CCGG	1 cut(s)	860
MspR9I	CCNGG	3 cut(s)	128, 228, 437
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	3 cut(s)	128, 228, 437
MwoI	GCNNNNNNNGC	4 cut(s)	584, 632, 725, 781
NdeII	GATC	4 cut(s)	91, 201, 307, 868
NheI	GCTAGC	2 cut(s)	425, 544
NlaIII	CATG	2 cut(s)	536, 557
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	2 cut(s)	536, 557
OliI	CACNNNNGTG	1 cut(s)	791
PciI	ACATGT	2 cut(s)	532, 553
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	5 cut(s)	7, 10, 151, 424, 580
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	2 cut(s)	532, 553
Psp6I	CCWGG	3 cut(s)	126, 226, 435
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	3 cut(s)	126, 226, 435
PspN4I	GGNNCC	1 cut(s)	225
PstI	CTGCAG	2 cut(s)	10, 76
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	2 cut(s)	53, 362
RsaNI	GTAC	2 cut(s)	52, 361
RseI	CAYNNNNRTG	2 cut(s)	140, 791
SaqAI	TTAA	4 cut(s)	14, 159, 282, 967
SatI	GCNGC	5 cut(s)	6, 9, 150, 423, 579
Sau3AI	GATC	4 cut(s)	91, 201, 307, 868
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	128, 228, 437
SduI	GDGCHC	1 cut(s)	135
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	4 cut(s)	161, 171, 685, 964
SfcI	CTRYAG	3 cut(s)	6, 72, 936
SmiMI	CAYNNNNRTG	2 cut(s)	140, 791
Sse9I	AATT	3 cut(s)	86, 165, 677
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	2 cut(s)	426, 545
StyD4I	CCNGG	3 cut(s)	126, 226, 435
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	69, 223
TaqI	TCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	86, 165, 677
TatI	WGTACW	2 cut(s)	51, 360
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	14, 159, 282, 967
Tru9I	TTAA	4 cut(s)	14, 159, 282, 967
TscAI	CASTG	3 cut(s)	370, 726, 735
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	5, 8, 149, 422, 578
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	309, 471
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	3 cut(s)	370, 726, 735
XapI	RAATTY	2 cut(s)	86, 677
XceI	RCATGY	2 cut(s)	536, 557
XspI	CTAG	2 cut(s)	426, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.